>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  147 bits (74), Expect = 2e-32
 Identities = 184/219 (84%), Gaps = 5/219 (2%)
 Strand = Plus / Minus

                                                                            
Query: 40       gccagcactcacgaatcatcttctgataacaaggagtgcttctgccatatacaaatgaat 99
                |||||||||| |  |||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct: 10412390 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 10412331

                                                                            
Query: 100      ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 157
                | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 10412330 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 10412271

                                                                            
Query: 158      tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 217
                ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 10412270 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 10412211

                                                       
Query: 218      gggattttctttcagtctgcaagaggctgactactctgt 256
                |  | |   ||||||||||||||||||||||||||||||
Sbjct: 10412210 gaaact---tttcagtctgcaagaggctgactactctgt 10412175

>gb|AC137931.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBa0039F10, complete sequence
          Length = 139714

 Score =  147 bits (74), Expect = 2e-32
 Identities = 184/219 (84%), Gaps = 5/219 (2%)
 Strand = Plus / Minus

                                                                         
Query: 40    gccagcactcacgaatcatcttctgataacaaggagtgcttctgccatatacaaatgaat 99
             |||||||||| |  |||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct: 68943 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 68884

                                                                         
Query: 100   ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 157
             | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 68883 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 68824

                                                                         
Query: 158   tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 217
             ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 68823 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 68764

                                                    
Query: 218   gggattttctttcagtctgcaagaggctgactactctgt 256
             |  | |   ||||||||||||||||||||||||||||||
Sbjct: 68763 gaaact---tttcagtctgcaagaggctgactactctgt 68728

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  147 bits (74), Expect = 2e-32
 Identities = 184/219 (84%), Gaps = 5/219 (2%)
 Strand = Plus / Minus

                                                                            
Query: 40       gccagcactcacgaatcatcttctgataacaaggagtgcttctgccatatacaaatgaat 99
                |||||||||| |  |||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct: 10410491 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 10410432

                                                                            
Query: 100      ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 157
                | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 10410431 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 10410372

                                                                            
Query: 158      tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 217
                ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 10410371 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 10410312

                                                       
Query: 218      gggattttctttcagtctgcaagaggctgactactctgt 256
                |  | |   ||||||||||||||||||||||||||||||
Sbjct: 10410311 gaaact---tttcagtctgcaagaggctgactactctgt 10410276

>dbj|AK107121.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-124-B05, full
            insert sequence
          Length = 1650

 Score =  147 bits (74), Expect = 2e-32
 Identities = 184/219 (84%), Gaps = 5/219 (2%)
 Strand = Plus / Minus

                                                                        
Query: 40   gccagcactcacgaatcatcttctgataacaaggagtgcttctgccatatacaaatgaat 99
            |||||||||| |  |||||||||||||||||||||||||||||| || ||||||| ||||
Sbjct: 1603 gccagcactcccatatcatcttctgataacaaggagtgcttctggcagatacaaaagaat 1544

                                                                        
Query: 100  ttaggaatgaaagaatgacacgggcaccaaaactctctt--gccctctaagaactctata 157
            | |||||| |||||||| || | ||||||||| |||| |   ||| |||| | |  ||||
Sbjct: 1543 tcaggaatcaaagaatggcatgagcaccaaaattctcctaacccccctaaaagccttata 1484

                                                                        
Query: 158  tacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaagagct 217
            ||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||| | 
Sbjct: 1483 tacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaagaacc 1424

                                                   
Query: 218  gggattttctttcagtctgcaagaggctgactactctgt 256
            |  | |   ||||||||||||||||||||||||||||||
Sbjct: 1423 gaaact---tttcagtctgcaagaggctgactactctgt 1388

>gb|AC118670.2| Genomic sequence for Oryza sativa, Nipponbare stain, clone OSJNBb0036D03,
              from chromosome 3, complete sequence
          Length = 125800

 Score = 89.7 bits (45), Expect = 4e-15
 Identities = 89/103 (86%), Gaps = 3/103 (2%)
 Strand = Plus / Minus

                                                                          
Query: 154    tatatacagactgaaaaatagactctggagtctacttattaatagtctgaagaaactaag 213
              ||||||||||| |||||||||||| ||||||||||||||| ||  ||||||| |||||||
Sbjct: 125740 tatatacagaccgaaaaatagactatggagtctacttattgatgatctgaagtaactaag 125681

                                                         
Query: 214    agctgggattttctttcagtctgcaagaggctgactactctgt 256
              | | |  | |   ||||||||||||||||||||||||||||||
Sbjct: 125680 aaccgaaact---tttcagtctgcaagaggctgactactctgt 125641

>gb|AC083964.3| Homo sapiens chromosome 8, clone RP11-91J19, complete sequence
          Length = 161160

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 149    aactctatatacagactgaaaaa 171
              |||||||||||||||||||||||
Sbjct: 155387 aactctatatacagactgaaaaa 155409

>emb|AL513489.7| Human DNA sequence from clone RP11-179D21 on chromosome X, complete
             sequence
          Length = 22695

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 202   gaagaaactaagagctgggattt 224
             |||||||||||||||||||||||
Sbjct: 20220 gaagaaactaagagctgggattt 20242

>gb|AC090135.13| Homo sapiens chromosome 8, clone RP11-18D5, complete sequence
          Length = 103709

 Score = 46.1 bits (23), Expect = 0.059
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 149   aactctatatacagactgaaaaa 171
             |||||||||||||||||||||||
Sbjct: 25345 aactctatatacagactgaaaaa 25323

>gb|AC108110.3| Homo sapiens chromosome 5 clone RP11-265O6, complete sequence
          Length = 136730

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 85    catatacaaatgaatttagga 105
             |||||||||||||||||||||
Sbjct: 16951 catatacaaatgaatttagga 16971

>gb|AC104774.4| Homo sapiens BAC clone RP11-5N22 from 2, complete sequence
          Length = 113862

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 90    acaaatgaatttaggaatgaa 110
             |||||||||||||||||||||
Sbjct: 53216 acaaatgaatttaggaatgaa 53236

>gb|AC150432.2| Branchiostoma floridae clone CH302-9D15, complete sequence
          Length = 173785

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 149    aactctatatacagactgaa 168
              ||||||||||||||||||||
Sbjct: 112238 aactctatatacagactgaa 112219

>gb|BC076483.1| Danio rerio zgc:92467, mRNA (cDNA clone MGC:92467 IMAGE:7043653),
            complete cds
          Length = 1420

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  ccaaaactctcttgccctct 145
            ||||||||||||||||||||
Sbjct: 1156 ccaaaactctcttgccctct 1175

>gb|AY504967.1| Iris hollandica putative cysteine protease 2 (CYS2) mRNA, complete
           cds
          Length = 1282

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 253 ctgtggtggtggatcttgga 272
           ||||||||||||||||||||
Sbjct: 323 ctgtggtggtggatcttgga 304

>emb|CT009723.4| Mouse DNA sequence from clone RP23-12L5 on chromosome 9, complete
             sequence
          Length = 210030

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 167   aaaaatagactctggagtctactt 190
             |||||| |||||||||||||||||
Sbjct: 33094 aaaaattgactctggagtctactt 33071

>gb|AC140788.4| Mus musculus BAC clone RP23-452K24 from chromosome 2, complete sequence
          Length = 181527

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   tttctttcagtctgcaagag 242
             ||||||||||||||||||||
Sbjct: 82464 tttctttcagtctgcaagag 82445

>gb|AC129317.3| Mus musculus BAC clone RP23-443L14 from chromosome 9, complete sequence
          Length = 210950

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 167    aaaaatagactctggagtctactt 190
              |||||| |||||||||||||||||
Sbjct: 199654 aaaaattgactctggagtctactt 199677

>ref|NM_001003494.1| Danio rerio zgc:92467 (zgc:92467), mRNA
          Length = 1420

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 126  ccaaaactctcttgccctct 145
            ||||||||||||||||||||
Sbjct: 1156 ccaaaactctcttgccctct 1175

>gb|AC106029.8| Homo sapiens chromosome 15, clone CTD-2538I11, complete sequence
          Length = 180591

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     acaaatgaatttaggaatga 109
              ||||||||||||||||||||
Sbjct: 143624 acaaatgaatttaggaatga 143605

>gb|AC026495.13| Homo sapiens chromosome 15, clone RP11-509A17, complete sequence
          Length = 188605

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 90     acaaatgaatttaggaatga 109
              ||||||||||||||||||||
Sbjct: 138484 acaaatgaatttaggaatga 138465

>gb|AC124220.20| Pan troglodytes clone rp43-70b2, complete sequence
          Length = 178815

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 90     acaaatgaatttaggaatga 109
              ||||||||||||||||||||
Sbjct: 152752 acaaatgaatttaggaatga 152771

>gb|AC100721.2| Homo sapiens chromosome 15, clone CTD-3177I6, complete sequence
          Length = 64373

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    acaaatgaatttaggaatga 109
             ||||||||||||||||||||
Sbjct: 16772 acaaatgaatttaggaatga 16791

>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome
          Length = 6260361

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    ttattaatagtctgaagaaa 208
              ||||||||||||||||||||
Sbjct: 766718 ttattaatagtctgaagaaa 766737

>emb|AL929262.22| Mouse DNA sequence from clone RP23-452K24 on chromosome 2, complete
             sequence
          Length = 145652

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   tttctttcagtctgcaagag 242
             ||||||||||||||||||||
Sbjct: 46654 tttctttcagtctgcaagag 46635

>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 243     gctgactactctgtggtggt 262
               ||||||||||||||||||||
Sbjct: 1107079 gctgactactctgtggtggt 1107060

>gb|AC122870.4| Mus musculus BAC clone RP23-103D17 from 3, complete sequence
          Length = 181063

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 170    aatagactctggagtctacttattaata 197
              ||||| |||||||||| |||||||||||
Sbjct: 116693 aatagtctctggagtccacttattaata 116720

>gb|AC174070.1| Homo sapiens chromosome 15 clone WI2-635I4, complete sequence
          Length = 38013

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 90    acaaatgaatttaggaatga 109
             ||||||||||||||||||||
Sbjct: 12922 acaaatgaatttaggaatga 12941


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,258,276
Number of Sequences: 3902068
Number of extensions: 3258276
Number of successful extensions: 61554
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61447
Number of HSP's gapped (non-prelim): 107
length of query: 278
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 256
effective length of database: 17,147,199,772
effective search space: 4389683141632
effective search space used: 4389683141632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)