Clone Name | rbastl31a03 |
---|---|
Clone Library Name | barley_pub |
>gb|BT016550.1| Zea mays clone Contig383 mRNA sequence Length = 918 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 247 tgaggcctgtagtagttgctctggtgaggagggtacgcccctggggcattgtacggtg 304 ||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||| Sbjct: 809 tgaggcctgtaatagttgctctggtgcggagggtaagccccaggggcattgtacggtg 752 Score = 77.8 bits (39), Expect = 3e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 347 cattgtaatacggcccgcgccacccaggatatgccggttggccatagtcatggccaggag 406 |||||||||| ||||| ||||| |||||||||||||| || || |||||||||||||||| Sbjct: 715 cattgtaatatggcccacgccatccaggatatgccggctgaccgtagtcatggccaggag 656 Query: 407 gcggctg 413 | ||||| Sbjct: 655 gtggctg 649
>gb|AY108541.1| Zea mays PCO120272 mRNA sequence Length = 869 Score = 83.8 bits (42), Expect = 4e-13 Identities = 54/58 (93%) Strand = Plus / Minus Query: 247 tgaggcctgtagtagttgctctggtgaggagggtacgcccctggggcattgtacggtg 304 ||||||||||| |||||||||||||| |||||||| ||||| |||||||||||||||| Sbjct: 841 tgaggcctgtaatagttgctctggtgcggagggtaagccccaggggcattgtacggtg 784 Score = 77.8 bits (39), Expect = 3e-11 Identities = 60/67 (89%) Strand = Plus / Minus Query: 347 cattgtaatacggcccgcgccacccaggatatgccggttggccatagtcatggccaggag 406 |||||||||| ||||| ||||| |||||||||||||| || || |||||||||||||||| Sbjct: 747 cattgtaatatggcccacgccatccaggatatgccggctgaccgtagtcatggccaggag 688 Query: 407 gcggctg 413 | ||||| Sbjct: 687 gtggctg 681
>ref|NM_197157.1| Oryza sativa (japonica cultivar-group) putative signal tranduction protein (OSJNBa0041P03.2), mRNA Length = 2871 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 243 tcattgaggcctgtagtagttgctctggtgaggagggtacgcccctggggcattgtacgg 302 ||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||| Sbjct: 2652 tcattgaggcctgtagtagctgctctggtgaggagggtaagaaccctgggcattgtacgg 2593 Query: 303 tg 304 || Sbjct: 2592 tg 2591 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 370 ccaggatatgccggttggccatagtcatgg 399 ||||||||||| ||||||||||||||||| Sbjct: 2522 ccaggatatgcttgttggccatagtcatgg 2493
>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete sequence Length = 139614 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 243 tcattgaggcctgtagtagttgctctggtgaggagggtacgcccctggggcattgtacgg 302 ||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||| Sbjct: 28364 tcattgaggcctgtagtagctgctctggtgaggagggtaagaaccctgggcattgtacgg 28305 Query: 303 tg 304 || Sbjct: 28304 tg 28303 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 370 ccaggatatgccggttggccatagtcatgg 399 ||||||||||| ||||||||||||||||| Sbjct: 28234 ccaggatatgcttgttggccatagtcatgg 28205
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 243 tcattgaggcctgtagtagttgctctggtgaggagggtacgcccctggggcattgtacgg 302 ||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||| Sbjct: 18322406 tcattgaggcctgtagtagctgctctggtgaggagggtaagaaccctgggcattgtacgg 18322465 Query: 303 tg 304 || Sbjct: 18322466 tg 18322467 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 370 ccaggatatgccggttggccatagtcatgg 399 ||||||||||| ||||||||||||||||| Sbjct: 18322536 ccaggatatgcttgttggccatagtcatgg 18322565 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 atgctgctgtgggtgctgct 433 |||||||||||||||||||| Sbjct: 22610100 atgctgctgtgggtgctgct 22610119
>dbj|AB117754.1| Oryza sativa (indica cultivar-group) DNA, indica specific region near the Rf-1 locus Length = 8200 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 243 tcattgaggcctgtagtagttgctctggtgaggagggtacgcccctggggcattgtacgg 302 ||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||| Sbjct: 4055 tcattgaggcctgtagtagctgctctggtgaggagggtaagaaccctgggcattgtacgg 3996 Query: 303 tg 304 || Sbjct: 3995 tg 3994 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 370 ccaggatatgccggttggccatagtcatgg 399 ||||||||||| ||||||||||||||||| Sbjct: 3925 ccaggatatgcttgttggccatagtcatgg 3896
>dbj|AK103856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148O10, full insert sequence Length = 3011 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 243 tcattgaggcctgtagtagttgctctggtgaggagggtacgcccctggggcattgtacgg 302 ||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||| Sbjct: 2772 tcattgaggcctgtagtagctgctctggtgaggagggtaagaaccctgggcattgtacgg 2713 Query: 303 tg 304 || Sbjct: 2712 tg 2711 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 370 ccaggatatgccggttggccatagtcatgg 399 ||||||||||| ||||||||||||||||| Sbjct: 2642 ccaggatatgcttgttggccatagtcatgg 2613
>dbj|AK060102.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-A07, full insert sequence Length = 957 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 243 tcattgaggcctgtagtagttgctctggtgaggagggtacgcccctggggcattgtacgg 302 ||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||| Sbjct: 715 tcattgaggcctgtagtagctgctctggtgaggagggtaagaaccctgggcattgtacgg 656 Query: 303 tg 304 || Sbjct: 655 tg 654 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 370 ccaggatatgccggttggccatagtcatgg 399 ||||||||||| ||||||||||||||||| Sbjct: 585 ccaggatatgcttgttggccatagtcatgg 556
>dbj|AK059840.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-206-D06, full insert sequence Length = 1264 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 243 tcattgaggcctgtagtagttgctctggtgaggagggtacgcccctggggcattgtacgg 302 ||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||| Sbjct: 1036 tcattgaggcctgtagtagctgctctggtgaggagggtaagaaccctgggcattgtacgg 977 Query: 303 tg 304 || Sbjct: 976 tg 975 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Minus Query: 370 ccaggatatgccggttggccatagtcatgg 399 ||||||||||| ||||||||||||||||| Sbjct: 906 ccaggatatgcttgttggccatagtcatgg 877
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Plus Query: 243 tcattgaggcctgtagtagttgctctggtgaggagggtacgcccctggggcattgtacgg 302 ||||||||||||||||||| ||||||||||||||||||| | || ||||||||||||| Sbjct: 18332059 tcattgaggcctgtagtagctgctctggtgaggagggtaagaaccctgggcattgtacgg 18332118 Query: 303 tg 304 || Sbjct: 18332119 tg 18332120 Score = 44.1 bits (22), Expect = 0.38 Identities = 28/30 (93%) Strand = Plus / Plus Query: 370 ccaggatatgccggttggccatagtcatgg 399 ||||||||||| ||||||||||||||||| Sbjct: 18332189 ccaggatatgcttgttggccatagtcatgg 18332218 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 atgctgctgtgggtgctgct 433 |||||||||||||||||||| Sbjct: 22622568 atgctgctgtgggtgctgct 22622587
>dbj|AB120526.1| Nicotiana tabacum HMA9 mRNA for ALG2-interacting protein X, complete cds Length = 3038 Score = 50.1 bits (25), Expect = 0.006 Identities = 28/29 (96%) Strand = Plus / Minus Query: 364 cgccacccaggatatgccggttggccata 392 ||||||||||||||||| ||||||||||| Sbjct: 2540 cgccacccaggatatgcaggttggccata 2512
>ref|XM_787519.1| PREDICTED: Strongylocentrotus purpuratus similar to PHD finger protein 10 (LOC587811), mRNA Length = 1224 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Minus Query: 401 caggaggcggctgatgctgctgtgggtgctgctg 434 ||||||||||||| ||||||||| | |||||||| Sbjct: 778 caggaggcggctgctgctgctgttgttgctgctg 745
>ref|XM_780854.1| PREDICTED: Strongylocentrotus purpuratus similar to PHD finger protein 10 (XAP135) (LOC580820), mRNA Length = 3198 Score = 44.1 bits (22), Expect = 0.38 Identities = 31/34 (91%) Strand = Plus / Minus Query: 401 caggaggcggctgatgctgctgtgggtgctgctg 434 ||||||||||||| ||||||||| | |||||||| Sbjct: 2320 caggaggcggctgctgctgctgttgttgctgctg 2287
>gb|AC116800.11| Mus musculus chromosome 8, clone RP24-335D17, complete sequence Length = 168912 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 gctgatgctgctgtgggtgctgctg 434 |||| |||||||||||||||||||| Sbjct: 117469 gctgctgctgctgtgggtgctgctg 117445
>ref|XM_387158.1| Gibberella zeae PH-1 chromosome 4 hypothetical protein (FG06982.1) partial mRNA Length = 2169 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 420 ctgtgggtgctgctggtactg 440 ||||||||||||||||||||| Sbjct: 1747 ctgtgggtgctgctggtactg 1727
>ref|XM_849845.1| PREDICTED: Canis familiaris similar to Glioma tumor suppressor candidate region gene 1 protein (LOC612119), mRNA Length = 2220 Score = 42.1 bits (21), Expect = 1.5 Identities = 27/29 (93%) Strand = Plus / Minus Query: 406 ggcggctgatgctgctgtgggtgctgctg 434 |||||||| ||||||||||| |||||||| Sbjct: 572 ggcggctgctgctgctgtggctgctgctg 544
>emb|AL359921.13| Human DNA sequence from clone RP11-385F5 on chromosome 1 Contains a novel gene, the LGALS8 gene for lectin, galactoside-binding, soluble, 8 (galectin 8), the gene for protein BAP28 (FLJ10359), a novel gene, the 5' end of the ACTN2 gene for actinin, alpha 2 and three CpG islands, complete sequence Length = 213757 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 159 tatacacaagaatggaatcca 179 ||||||||||||||||||||| Sbjct: 88698 tatacacaagaatggaatcca 88718
>emb|BX640445.1| Bordetella bronchiseptica strain RB50, complete genome; segment 9/16 Length = 348706 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 gcttgcggatacggccctggt 324 ||||||||||||||||||||| Sbjct: 14037 gcttgcggatacggccctggt 14017
>emb|BX640427.1| Bordetella parapertussis strain 12822, complete genome; segment 5/14 Length = 348997 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 gcttgcggatacggccctggt 324 ||||||||||||||||||||| Sbjct: 270817 gcttgcggatacggccctggt 270797
>emb|BX640416.1| Bordetella pertussis strain Tohama I, complete genome; segment 6/12 Length = 349354 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 304 gcttgcggatacggccctggt 324 ||||||||||||||||||||| Sbjct: 204474 gcttgcggatacggccctggt 204454
>gb|AC023751.3| Drosophila melanogaster 3L BAC RP98-31C17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 187437 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 gctgatgctgctgtgggtgctgctg 434 |||||||||||||||| |||||||| Sbjct: 67419 gctgatgctgctgtggctgctgctg 67395
>ref|NM_169891.1| Drosophila melanogaster CG31209-RA (CG31209), mRNA Length = 2283 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 gctgatgctgctgtgggtgctgctg 434 ||||||||||||| ||||||||||| Sbjct: 1564 gctgatgctgctgcgggtgctgctg 1540
>ref|NM_168102.1| Drosophila melanogaster Guanine nucleotide exchange factor GEF64C CG32239-RA (Gef64C), mRNA Length = 7283 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 gctgatgctgctgtgggtgctgctg 434 |||||||||||||||| |||||||| Sbjct: 2910 gctgatgctgctgtggctgctgctg 2886
>gb|AY064174.1| Drosophila melanogaster rho GTPase guanine nucleotide exchange factor GEF64C (Gef64c) mRNA, complete cds Length = 7304 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 gctgatgctgctgtgggtgctgctg 434 |||||||||||||||| |||||||| Sbjct: 2918 gctgatgctgctgtggctgctgctg 2894
>gb|AY089327.1| Drosophila melanogaster AT13703 full insert cDNA Length = 1823 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 gctgatgctgctgtgggtgctgctg 434 ||||||||||||| ||||||||||| Sbjct: 1000 gctgatgctgctgcgggtgctgctg 976
>gb|AC008364.5|AC008364 Drosophila melanogaster, chromosome 3R, region 92D-92D, BAC clone BACR09G02, complete sequence Length = 166642 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 gctgatgctgctgtgggtgctgctg 434 ||||||||||||| ||||||||||| Sbjct: 98303 gctgatgctgctgcgggtgctgctg 98279
>gb|AE003729.3| Drosophila melanogaster chromosome 3R, section 67 of 118 of the complete sequence Length = 232477 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 gctgatgctgctgtgggtgctgctg 434 ||||||||||||| ||||||||||| Sbjct: 168255 gctgatgctgctgcgggtgctgctg 168231
>gb|AE003482.4| Drosophila melanogaster chromosome 3L, section 16 of 83 of the complete sequence Length = 302417 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 gctgatgctgctgtgggtgctgctg 434 |||||||||||||||| |||||||| Sbjct: 140429 gctgatgctgctgtggctgctgctg 140405
>ref|XM_508129.1| PREDICTED: Pan troglodytes LOC450847 (LOC450847), mRNA Length = 1199 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ctgatgctgctgtgggtgct 430 |||||||||||||||||||| Sbjct: 39 ctgatgctgctgtgggtgct 20
>ref|NM_197915.1| Oryza sativa (japonica cultivar-group) putative peptide transporter (OSJNBa0056G17.27), mRNA Length = 1716 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 atgctgctgtgggtgctgct 433 |||||||||||||||||||| Sbjct: 1165 atgctgctgtgggtgctgct 1184
>gb|AC166075.2| Mus musculus BAC clone RP23-143L15 from chromosome 1, complete sequence Length = 212447 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ttcctcatttccataatcca 36 |||||||||||||||||||| Sbjct: 191935 ttcctcatttccataatcca 191916
>gb|AC131577.16| Mus musculus chromosome 1, clone RP23-23I4, complete sequence Length = 234224 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 141 tcataaccagtatgcaagta 160 |||||||||||||||||||| Sbjct: 108886 tcataaccagtatgcaagta 108867
>ref|XM_954789.1| Neurospora crassa OR74A hypothetical protein (NCU05891.1) partial mRNA Length = 3870 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 1451 tgctgctgtgggtgctgctg 1432
>ref|XM_325745.1| Neurospora crassa OR74A hypothetical protein (NCU05891.1) partial mRNA Length = 3870 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 1451 tgctgctgtgggtgctgctg 1432
>gb|AY363102.1|AY363102S1 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, exons 1 and 2 Length = 309506 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 aatggaatccacaagaacac 188 |||||||||||||||||||| Sbjct: 178738 aatggaatccacaagaacac 178719
>emb|CR672926.2|CNS0FI78 Tetraodon nigroviridis full-length cDNA Length = 1038 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 400 ccaggaggcggctgatgctgctgt 423 ||||| |||||||||||||||||| Sbjct: 843 ccaggtggcggctgatgctgctgt 820
>ref|NM_009211.1| Mus musculus SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1 (Smarcc1), mRNA Length = 4765 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 aggaggcggctgatgctgctgtgg 425 |||||||||||| ||||||||||| Sbjct: 3303 aggaggcggctgctgctgctgtgg 3280
>emb|AL445199.37| Human DNA sequence from clone RP13-439H18 on chromosome 10 Contains the GPR123 gene for G protein-coupled receptor 123, a novel gene (containing KIAA1768, FLJ00378 and FLJ00252), gene FLJ25027, the UTF1 gene for undifferentiated embryonic cell transcription factor 1, the 5' end of the VENTX2 gene for VENT-like homeobox2, a novel gene, a 60S ribosomal protein L5 (RPL5) pseudogene and twenty five CpG islands, complete sequence Length = 212199 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 411 ctgatgctgctgtgggtgct 430 |||||||||||||||||||| Sbjct: 150335 ctgatgctgctgtgggtgct 150316
>ref|XM_500119.1| Yarrowia lipolytica CLIB122, YALI0A16207g predicted mRNA Length = 3537 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 632 tgctgctgtgggtgctgctg 613 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 620 tgctgctgtgggtgctgctg 601
>ref|XM_500562.1| Yarrowia lipolytica CLIB122, YALI0B06285g predicted mRNA Length = 3537 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 632 tgctgctgtgggtgctgctg 613 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 620 tgctgctgtgggtgctgctg 601
>ref|XM_501856.1| Yarrowia lipolytica CLIB122, YALI0C15158g predicted mRNA Length = 3537 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 632 tgctgctgtgggtgctgctg 613 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 620 tgctgctgtgggtgctgctg 601
>ref|XM_503332.1| Yarrowia lipolytica CLIB122, YALI0D26774g predicted mRNA Length = 3537 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 632 tgctgctgtgggtgctgctg 613 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 620 tgctgctgtgggtgctgctg 601
>ref|XM_504344.1| Yarrowia lipolytica CLIB122, YALI0E24255g predicted mRNA Length = 3537 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 632 tgctgctgtgggtgctgctg 613 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 620 tgctgctgtgggtgctgctg 601
>gb|AE008877.1| Salmonella typhimurium LT2, section 181 of 220 of the complete genome Length = 22492 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 17926 tgctgctgtgggtgctgctg 17907
>gb|AE008800.1| Salmonella typhimurium LT2, section 104 of 220 of the complete genome Length = 22908 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 18709 tgctgctgtgggtgctgctg 18690
>emb|BX572601.1| Rhodopseudomonas palustris CGA009 complete genome; segment 9/16 Length = 348580 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 413 gatgctgctgtgggtgctgc 432 |||||||||||||||||||| Sbjct: 110923 gatgctgctgtgggtgctgc 110942
>emb|AL627274.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 10/20 Length = 256050 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 6583 tgctgctgtgggtgctgctg 6564
>emb|AL627280.1| Salmonella enterica serovar Typhi (Salmonella typhi) strain CT18, complete chromosome; segment 16/20 Length = 245050 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 105165 tgctgctgtgggtgctgctg 105184
>emb|AJ318059.1|SJU318059 Spalax judaei mRNA for clock protein Length = 2598 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 gcggctgatgctgctgtgggtgctgctg 434 ||||||| ||||||||||| |||||||| Sbjct: 2323 gcggctgctgctgctgtggctgctgctg 2296
>emb|AJ318058.1|SCA318058 Spalax carmeli mRNA for clock protein Length = 2598 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 gcggctgatgctgctgtgggtgctgctg 434 ||||||| ||||||||||| |||||||| Sbjct: 2323 gcggctgctgctgctgtggctgctgctg 2296
>emb|AJ318057.1|SGA318057 Spalax galili mRNA for clock protein Length = 2598 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 407 gcggctgatgctgctgtgggtgctgctg 434 ||||||| ||||||||||| |||||||| Sbjct: 2323 gcggctgctgctgctgtggctgctgctg 2296
>emb|AJ621548.1| Yarrowia lipolytica mutB gene for putative MutB protein and mutA gene for putative MutA transposase Length = 7413 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 4041 tgctgctgtgggtgctgctg 4022 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 4029 tgctgctgtgggtgctgctg 4010
>emb|AL591410.8| Mouse DNA sequence from clone RP23-96I2 on chromosome 11 Contains part of the Myo1d gene for myosin ID, complete sequence Length = 231675 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 413 gatgctgctgtgggtgctgctggt 436 ||||||||| |||||||||||||| Sbjct: 80126 gatgctgctctgggtgctgctggt 80149
>gb|AC120053.4| Homo sapiens chromosome 8, clone CTD-2006H14, complete sequence Length = 124497 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 197 gaggaaaaaatgagaacaaa 216 |||||||||||||||||||| Sbjct: 48933 gaggaaaaaatgagaacaaa 48914
>gb|AC010834.19| Homo sapiens chromosome 8, clone RP11-10N23, complete sequence Length = 175967 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gaggaaaaaatgagaacaaa 216 |||||||||||||||||||| Sbjct: 21818 gaggaaaaaatgagaacaaa 21837
>ref|NM_142062.1| Drosophila melanogaster CG14363-RA (CG14363), mRNA Length = 2978 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 411 ctgatgctgctgtgggtgctgctg 434 ||||||||||||||| |||||||| Sbjct: 693 ctgatgctgctgtggctgctgctg 670
>gb|AC108004.3| Homo sapiens chromosome 17, clone CTD-2348K1, complete sequence Length = 116762 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 gctgctgtgggtgctgctgg 435 |||||||||||||||||||| Sbjct: 3016 gctgctgtgggtgctgctgg 2997
>dbj|AK144122.1| Mus musculus kidney CCL-142 RAG cDNA, RIKEN full-length enriched library, clone:G430026A06 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, full insert sequence Length = 4467 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 aggaggcggctgatgctgctgtgg 425 |||||||||||| ||||||||||| Sbjct: 3435 aggaggcggctgctgctgctgtgg 3412
>dbj|AK143485.1| Mus musculus 8 cells embryo 8 cells cDNA, RIKEN full-length enriched library, clone:E860013E10 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, full insert sequence Length = 4683 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 aggaggcggctgatgctgctgtgg 425 |||||||||||| ||||||||||| Sbjct: 3336 aggaggcggctgctgctgctgtgg 3313
>dbj|AK144631.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730014K04 product:SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1, full insert sequence Length = 3807 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 aggaggcggctgatgctgctgtgg 425 |||||||||||| ||||||||||| Sbjct: 3316 aggaggcggctgctgctgctgtgg 3293
>gb|AC018727.10| Oryza sativa chromosome 10 BAC OSJNBa0056G17 genomic sequence, complete sequence Length = 139999 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 atgctgctgtgggtgctgct 433 |||||||||||||||||||| Sbjct: 64769 atgctgctgtgggtgctgct 64788
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 cggcccgcgccacccaggat 376 |||||||||||||||||||| Sbjct: 2605461 cggcccgcgccacccaggat 2605442
>gb|AC154708.3| Mus musculus BAC clone RP24-355K5 from chromosome 14, complete sequence Length = 180538 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 aatggaatccacaagaacac 188 |||||||||||||||||||| Sbjct: 94817 aatggaatccacaagaacac 94798
>emb|BX465196.11| Mouse DNA sequence from clone RP23-459K15 on chromosome X, complete sequence Length = 184607 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 gctgctgtgggtgctgctgg 435 |||||||||||||||||||| Sbjct: 8066 gctgctgtgggtgctgctgg 8047
>emb|BX813330.7| Mouse DNA sequence from clone RP23-11C16 on chromosome X, complete sequence Length = 148732 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 gctgctgtgggtgctgctgg 435 |||||||||||||||||||| Sbjct: 46447 gctgctgtgggtgctgctgg 46466
>gb|AC007650.7|AC007650 Drosophila melanogaster, chromosome 3R, region 87F-87F, BAC clone BACR30G22, complete sequence Length = 167912 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 ctgatgctgctgtgggtgctgctg 434 ||||||||||||||| |||||||| Sbjct: 115600 ctgatgctgctgtggctgctgctg 115623
>gb|AC159372.1| Mus musculus BAC clone RP24-285I4 from chromosome 9, complete sequence Length = 171391 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 402 aggaggcggctgatgctgctgtgg 425 |||||||||||| ||||||||||| Sbjct: 20320 aggaggcggctgctgctgctgtgg 20343
>gb|AF240580.1|AF240580 Homo sapiens clone 17ptel_2111ctg_drft sequence Length = 82360 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 gctgctgtgggtgctgctgg 435 |||||||||||||||||||| Sbjct: 54322 gctgctgtgggtgctgctgg 54341
>gb|CP000026.1| Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150 Length = 4585229 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 3803623 tgctgctgtgggtgctgctg 3803604 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 694636 tgctgctgtgggtgctgctg 694655
>dbj|AK121847.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033101J24, full insert sequence Length = 2159 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 atgctgctgtgggtgctgct 433 |||||||||||||||||||| Sbjct: 1402 atgctgctgtgggtgctgct 1421
>ref|XM_554961.1| Anopheles gambiae str. PEST ENSANGP00000029497 (ENSANGG00000022746), partial mRNA Length = 1002 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 632 tgctgctgtgggtgctgctg 651
>dbj|AK066937.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013092G19, full insert sequence Length = 2695 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 414 atgctgctgtgggtgctgct 433 |||||||||||||||||||| Sbjct: 1237 atgctgctgtgggtgctgct 1256
>gb|AE014613.1| Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome Length = 4791961 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 3818655 tgctgctgtgggtgctgctg 3818674 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 697130 tgctgctgtgggtgctgctg 697149
>emb|AJ890498.1| Prunus persica mRNA for endo-beta-1,4-glucanase (eg4 gene) Length = 1863 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 ttggccatagtcatggccag 403 |||||||||||||||||||| Sbjct: 90 ttggccatagtcatggccag 71
>emb|AJ890497.1| Prunus persica eg4 gene for endo-beta-1,4-glucanase, exons 1-9 Length = 8309 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 384 ttggccatagtcatggccag 403 |||||||||||||||||||| Sbjct: 3064 ttggccatagtcatggccag 3045
>gb|AE003701.2| Drosophila melanogaster chromosome 3R, section 39 of 118 of the complete sequence Length = 208368 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 411 ctgatgctgctgtgggtgctgctg 434 ||||||||||||||| |||||||| Sbjct: 189743 ctgatgctgctgtggctgctgctg 189766
>gb|AE017220.1| Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67, complete genome Length = 4755700 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 3956304 tgctgctgtgggtgctgctg 3956285 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 2364916 tgctgctgtgggtgctgctg 2364897
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 3099440 tgctgctgtgggtgctgctg 3099421
>gb|AC137555.4| Mus musculus BAC clone RP23-445B17 from 1, complete sequence Length = 174607 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ttcctcatttccataatcca 36 |||||||||||||||||||| Sbjct: 62360 ttcctcatttccataatcca 62341
>emb|CR382131.1| Yarrowia lipolytica chromosome E of strain CLIB 122 of Yarrowia lipolytica Length = 4224103 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 2887474 tgctgctgtgggtgctgctg 2887455 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 2887462 tgctgctgtgggtgctgctg 2887443
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica Length = 3633272 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 3563472 tgctgctgtgggtgctgctg 3563491 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 3563460 tgctgctgtgggtgctgctg 3563479
>emb|CR382129.1| Yarrowia lipolytica chromosome C of strain CLIB122 of Yarrowia lipolytica Length = 3272609 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 2116464 tgctgctgtgggtgctgctg 2116483 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 2116452 tgctgctgtgggtgctgctg 2116471
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 836989 tgctgctgtgggtgctgctg 836970 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 836977 tgctgctgtgggtgctgctg 836958
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 1652500 tgctgctgtgggtgctgctg 1652481 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 1652488 tgctgctgtgggtgctgctg 1652469
>gb|U85614.1|MMU85614 Mus musculus SRG3 mRNA, complete cds Length = 4765 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 402 aggaggcggctgatgctgctgtgg 425 |||||||||||| ||||||||||| Sbjct: 3303 aggaggcggctgctgctgctgtgg 3280
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 3028171 tgctgctgtgggtgctgctg 3028152
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 415 tgctgctgtgggtgctgctg 434 |||||||||||||||||||| Sbjct: 829342 tgctgctgtgggtgctgctg 829361
>emb|AL691445.21| Mouse DNA sequence from clone RP23-67G3 on chromosome X, complete sequence Length = 189233 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 gctgctgtgggtgctgctgg 435 |||||||||||||||||||| Sbjct: 123578 gctgctgtgggtgctgctgg 123597
>emb|AL845304.4| Mouse DNA sequence from clone RP23-184H6 on chromosome X, complete sequence Length = 160065 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 416 gctgctgtgggtgctgctgg 435 |||||||||||||||||||| Sbjct: 33015 gctgctgtgggtgctgctgg 32996
>emb|AL136329.1|MM303011 Mus musculus chromosome X, clone RP21-303O11 Length = 123835 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 416 gctgctgtgggtgctgctgg 435 |||||||||||||||||||| Sbjct: 68339 gctgctgtgggtgctgctgg 68358
>dbj|AB063389.1| Cyprinus carpio cMKK4 mRNA for MAP kinase kinase 4, complete cds Length = 1804 Score = 40.1 bits (20), Expect = 5.9 Identities = 30/32 (93%), Gaps = 1/32 (3%) Strand = Plus / Minus Query: 409 ggctgatgctgctgtgggtgctgctggtactg 440 |||||||||||||| |||||||||||| |||| Sbjct: 84 ggctgatgctgctg-gggtgctgctgggactg 54 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,068,992 Number of Sequences: 3902068 Number of extensions: 4068992 Number of successful extensions: 68092 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 92 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 67664 Number of HSP's gapped (non-prelim): 421 length of query: 441 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 419 effective length of database: 17,147,199,772 effective search space: 7184676704468 effective search space used: 7184676704468 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)