ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl30h10 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 85.5 bits (210), Expect = 6e-17 Identities = 39/46 (84%), Positives = 41/46 (89%) Frame = -3 Query: 453 MNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 MN DP+LKNR GPAKFPYMLLYPNTSDH G A GLTA+GIPNSISI Sbjct: 817 MNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 77.8 bits (190), Expect = 1e-14 Identities = 35/46 (76%), Positives = 39/46 (84%) Frame = -3 Query: 453 MNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 MN DP LKNR GPA FPY L++PNTSD+ G AEG+TARGIPNSISI Sbjct: 818 MNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSISI 863
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 77.0 bits (188), Expect = 2e-14 Identities = 36/46 (78%), Positives = 39/46 (84%) Frame = -3 Query: 453 MNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 MN D LKNR GPA+FPYMLLYPNTSD TG A G+TA+GIPNSISI Sbjct: 821 MNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 72.8 bits (177), Expect = 4e-13 Identities = 34/46 (73%), Positives = 35/46 (76%) Frame = -3 Query: 453 MNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 MN DP KNR GP FPY LLYPNTSD G A GL+ARGIPNSISI Sbjct: 825 MNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSISI 870
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 65.9 bits (159), Expect = 5e-11 Identities = 33/47 (70%), Positives = 36/47 (76%), Gaps = 1/47 (2%) Frame = -3 Query: 453 MNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQ-AEGLTARGIPNSISI 316 MN + LKNR GP K PYMLLYPNTSD T + +GLTA GIPNSISI Sbjct: 831 MNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 54.3 bits (129), Expect = 1e-07 Identities = 28/45 (62%), Positives = 31/45 (68%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N D L+NR GPAK PY LLYP++ EGLT RGIPNSISI Sbjct: 815 NKDETLRNRYGPAKMPYTLLYPSSE------EGLTFRGIPNSISI 853
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 54.3 bits (129), Expect = 1e-07 Identities = 27/45 (60%), Positives = 31/45 (68%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N+D L+NR GP K PY LLYP++ EGLT RGIPNSISI Sbjct: 828 NNDESLRNRYGPVKMPYTLLYPSSE------EGLTCRGIPNSISI 866
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 53.9 bits (128), Expect = 2e-07 Identities = 27/45 (60%), Positives = 30/45 (66%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 NSDP L+NRTGP + PY LL H EGLT +GIPNSISI Sbjct: 826 NSDPSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPNSISI 864
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 52.4 bits (124), Expect = 5e-07 Identities = 26/45 (57%), Positives = 32/45 (71%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N+D +L+NR GP + PY LLYP++ EGLT RGIPNSISI Sbjct: 823 NNDEKLRNRHGPVEMPYTLLYPSSK------EGLTFRGIPNSISI 861
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 52.0 bits (123), Expect = 7e-07 Identities = 26/45 (57%), Positives = 30/45 (66%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N+D L NR GP + PY LL+PN +EGLT RGIPNSISI Sbjct: 828 NNDQSLSNRLGPVQLPYTLLHPN-------SEGLTCRGIPNSISI 865
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 51.2 bits (121), Expect = 1e-06 Identities = 26/45 (57%), Positives = 28/45 (62%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N D L+NR GP K PY +L P D EGLT RGIPNSISI Sbjct: 823 NKDSSLRNRNGPVKMPYTVLLPTCED-----EGLTFRGIPNSISI 862
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 50.4 bits (119), Expect = 2e-06 Identities = 27/46 (58%), Positives = 32/46 (69%), Gaps = 1/46 (2%) Frame = -3 Query: 450 NSDPQLK-NRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N+DP L+ NR GP + PY LLYP++ EGLT RGIPNSISI Sbjct: 800 NNDPSLQGNRLGPVQLPYTLLYPSSE------EGLTFRGIPNSISI 839
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 50.4 bits (119), Expect = 2e-06 Identities = 25/45 (55%), Positives = 31/45 (68%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N+DP L +R GP + PY LL+P++ EGLT RGIPNSISI Sbjct: 826 NNDPSLYHRVGPVQLPYTLLHPSSK------EGLTFRGIPNSISI 864
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 49.7 bits (117), Expect = 4e-06 Identities = 25/45 (55%), Positives = 31/45 (68%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N+D +L+NR GP + PY LL P++ EGLT RGIPNSISI Sbjct: 819 NNDEKLRNRCGPVQMPYTLLLPSSK------EGLTFRGIPNSISI 857
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 48.9 bits (115), Expect = 6e-06 Identities = 24/46 (52%), Positives = 29/46 (63%) Frame = -3 Query: 453 MNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 MNS KNR+GP PY LL+P + EGLT +GIPNS+SI Sbjct: 820 MNSHKSWKNRSGPVNVPYTLLFPTSE------EGLTGKGIPNSVSI 859
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 48.1 bits (113), Expect = 1e-05 Identities = 24/45 (53%), Positives = 29/45 (64%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N D LKNRTG K PY LL+P++ G+T RGIPNS+SI Sbjct: 821 NDDETLKNRTGLVKMPYTLLFPSSEG------GVTGRGIPNSVSI 859
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 46.2 bits (108), Expect = 4e-05 Identities = 23/39 (58%), Positives = 27/39 (69%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGI 334 N+D L+NRTGPAK PY LLYP++ EGLT RGI Sbjct: 709 NNDETLRNRTGPAKMPYTLLYPSSE------EGLTFRGI 741
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 43.9 bits (102), Expect = 2e-04 Identities = 22/45 (48%), Positives = 27/45 (60%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N D L NR+GP PY LL+P + GLT +GIPNS+SI Sbjct: 823 NGDNILTNRSGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 861
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 43.5 bits (101), Expect = 3e-04 Identities = 22/45 (48%), Positives = 27/45 (60%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N + L NRTGP PY LL+P + GLT +GIPNS+SI Sbjct: 822 NGNNILTNRTGPVNAPYTLLFPTSEG------GLTGKGIPNSVSI 860
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 40.0 bits (92), Expect = 0.003 Identities = 18/45 (40%), Positives = 27/45 (60%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N+DP +NR G PY L+ P++ G+T RG+PNS++I Sbjct: 861 NADPSRRNRCGAGVLPYELMAPSS------GPGITCRGVPNSVTI 899
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 39.7 bits (91), Expect = 0.004 Identities = 22/45 (48%), Positives = 27/45 (60%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N++P+ KNR G PY LL P + G+T RGIPNSISI Sbjct: 858 NNNPENKNRCGAGIVPYELLKPFSEP------GVTGRGIPNSISI 896
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 39.3 bits (90), Expect = 0.005 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 4/49 (8%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTG----QAEGLTARGIPNSISI 316 N+DP KNR G PY+LL P+ D T + + GIPNSISI Sbjct: 888 NNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 38.5 bits (88), Expect = 0.008 Identities = 21/45 (46%), Positives = 26/45 (57%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N+D KNR G PY LL P++ G+T RG+PNSISI Sbjct: 880 NADHGRKNRCGAGVLPYELLAPSSPP------GVTCRGVPNSISI 918
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 36.6 bits (83), Expect = 0.031 Identities = 20/45 (44%), Positives = 24/45 (53%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N D +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 886 NKDRKLKNRCGAGILPYQLMKPFSD------SGVTGMGIPNSTSI 924
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 36.2 bits (82), Expect = 0.040 Identities = 20/45 (44%), Positives = 24/45 (53%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N D +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 903 NKDRKLKNRCGAGILPYQLMKPFSD------AGVTGMGIPNSTSI 941
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 33.1 bits (74), Expect = 0.34 Identities = 19/45 (42%), Positives = 25/45 (55%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N D +NR G PY+LL P + + A+ + GIPNSISI Sbjct: 889 NKDDSRRNRHGAGVVPYVLLRP-LNGNPMDAKTVMEMGIPNSISI 932
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 32.3 bits (72), Expect = 0.58 Identities = 21/45 (46%), Positives = 25/45 (55%) Frame = -3 Query: 450 NSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 316 N + LKNR G Y LL P TS+H G+T G+P SISI Sbjct: 858 NVNITLKNRAGAGVVKYELLKP-TSEH-----GVTGMGVPYSISI 896
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 31.2 bits (69), Expect = 1.3 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = +1 Query: 295 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 414 T DVL DG VR G +G+SR+V V EQH ELG Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQHHDELG 476
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 2.2 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -2 Query: 418 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 329 A P H A P L H +G HRQGHPE Sbjct: 231 APDAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 2.2 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -2 Query: 418 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 329 A P H A P L H +G HRQGHPE Sbjct: 231 APNAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 29.3 bits (64), Expect = 4.9 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Frame = -2 Query: 442 PAAQEPHRAGQVPIHAALPKHLRPHGTGRG----AHRQGHPEQHIHL 314 P+ PHR +P H P+H PH H Q HP H H+ Sbjct: 380 PSPHTPHRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQ-HPPPHQHI 425
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 28.9 bits (63), Expect = 6.4 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = -3 Query: 399 MLLYPNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVC 235 M PN + HT Q AE A+ +P S S R L LC P + P AC Sbjct: 55 MTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKL 114 Query: 234 VCDRELCRCMNN 199 +C+ CM N Sbjct: 115 LCETVRGECMEN 126
>NORR_SALTY (Q8ZMJ8) Anaerobic nitric oxide reductase transcription regulator| norR Length = 506 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +1 Query: 355 LGLSRVVGGVWVEQHVWELGRPGAVLELRVRVH 453 LGLSRVV +H+ G PG V EL +H Sbjct: 380 LGLSRVVLSPGARRHLLNYGWPGNVRELEHAIH 412
>NORR_SALTI (Q8Z4C6) Anaerobic nitric oxide reductase transcription regulator| norR Length = 506 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = +1 Query: 355 LGLSRVVGGVWVEQHVWELGRPGAVLELRVRVH 453 LGLSRVV +H+ G PG V EL +H Sbjct: 380 LGLSRVVLSPGARRHLLNYGWPGNVRELEHAIH 412 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,785,348 Number of Sequences: 219361 Number of extensions: 1605440 Number of successful extensions: 4240 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 4057 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4212 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
