ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl30h09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT008960.1| Triticum aestivum clone wdk1c.pk012.i2:fis, full insert mRNA sequence Length = 2815 Score = 270 bits (136), Expect = 4e-69 Identities = 192/211 (90%), Gaps = 6/211 (2%) Strand = Plus / Minus Query: 238 aagcgcatcaccaaaagttggaacgcgcaagtgcgactagc------gctcagcaaaaga 291 ||||||||||||||||||||||||||||||||||| || || |||||||| |||| Sbjct: 2620 aagcgcatcaccaaaagttggaacgcgcaagtgcggctggctggctggctcagcagaaga 2561 Query: 292 acatgctgctgcggactttctcatggagacgaggcagctcctgcaccgggccgctggcag 351 |||||||||||||||||||||||||||| ||||||||||||||||| || ||||| | | Sbjct: 2560 acatgctgctgcggactttctcatggaggcgaggcagctcctgcactggagcgctgccgg 2501 Query: 352 tagaggtgtggccaccaccctggctcgacgacgtctcggacatctcatcaaactttatga 411 ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 2500 cagaggtgtggccaccgccctggctcgacgacgtctcagacatctcatcaaactttatga 2441 Query: 412 actgcgccacctgagcagctgcaagatgtgc 442 ||||||||||||||||||| ||||||||||| Sbjct: 2440 actgcgccacctgagcagccgcaagatgtgc 2410 Score = 83.8 bits (42), Expect = 4e-13 Identities = 79/89 (88%), Gaps = 3/89 (3%) Strand = Plus / Minus Query: 125 caaaggttctgaggcaccaaagtgtggcagcaagcttaggaacacaacatcccaggtgtc 184 |||||||||||||||||||| ||| ||| | |||||||||||||||||||||||| ||| Sbjct: 2728 caaaggttctgaggcaccaa-gtgcagcaaccagcttaggaacacaacatcccaggagtc 2670 Query: 185 caacaggtcatcaaaggggccactactac 213 ||||||| ||||| | |||||||||||| Sbjct: 2669 caacaggccatcaca--ggccactactac 2643
>gb|BT009560.1| Triticum aestivum clone wre1n.pk0001.h6:fis, full insert mRNA sequence Length = 1565 Score = 87.7 bits (44), Expect = 3e-14 Identities = 110/132 (83%) Strand = Plus / Minus Query: 281 tcagcaaaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 340 |||||| ||||||||| ||| | |||||||| || || |||||||||||| ||||||| Sbjct: 1171 tcagcagaagaacatggagctcctcactttctcgtgcagccgaggcagctccggcaccgg 1112 Query: 341 gccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctcatc 400 | ||||| | | ||| |||||||| || ||||||||||||||||| || ||||| || || Sbjct: 1111 ggcgctgcccgcagacgtgtggccccctccctggctcgacgacgtgtccgacatgtcctc 1052 Query: 401 aaactttatgaa 412 |||||| ||||| Sbjct: 1051 aaacttcatgaa 1040
>gb|AY109357.1| Zea mays CL881_1 mRNA sequence Length = 3158 Score = 75.8 bits (38), Expect = 1e-10 Identities = 56/62 (90%) Strand = Plus / Minus Query: 381 gacgtctcggacatctcatcaaactttatgaactgcgccacctgagcagctgcaagatgt 440 |||||||| ||||||||||| |||||||||||||| | |||||||||||||| |||||| Sbjct: 2743 gacgtctccgacatctcatcgaactttatgaactggccaacctgagcagctgccagatgt 2684 Query: 441 gc 442 || Sbjct: 2683 gc 2682 Score = 44.1 bits (22), Expect = 0.38 Identities = 52/62 (83%) Strand = Plus / Minus Query: 279 gctcagcaaaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 338 ||||||||||||||||| ||| | ||||||||||| || || ||||||||||| ||| Sbjct: 2842 gctcagcaaaagaacatcgagctcctcactttctcatgcaggcgcggcagctcctggacc 2783 Query: 339 gg 340 || Sbjct: 2782 gg 2781
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 69.9 bits (35), Expect = 7e-09 Identities = 112/137 (81%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 279 gctcagcaaaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 338 |||||||| ||||||||| ||| | |||||| | ||| || ||||||||||| ||||| Sbjct: 9630504 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 9630563 Query: 339 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 398 || ||||| | | ||||| ||||||||| ||||||||||||||||| |||||||| Sbjct: 9630564 ggagcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcg 9630620 Query: 399 tcaaactttatgaactg 415 || ||||| |||||||| Sbjct: 9630621 tcgaacttgatgaactg 9630637 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 catcaccaaaagttggaacg 262 |||||||||||||||||||| Sbjct: 21143571 catcaccaaaagttggaacg 21143552
>dbj|AP000836.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0038F12 Length = 190014 Score = 69.9 bits (35), Expect = 7e-09 Identities = 112/137 (81%), Gaps = 3/137 (2%) Strand = Plus / Plus Query: 279 gctcagcaaaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 338 |||||||| ||||||||| ||| | |||||| | ||| || ||||||||||| ||||| Sbjct: 68507 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 68566 Query: 339 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 398 || ||||| | | ||||| ||||||||| ||||||||||||||||| |||||||| Sbjct: 68567 ggagcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcg 68623 Query: 399 tcaaactttatgaactg 415 || ||||| |||||||| Sbjct: 68624 tcgaacttgatgaactg 68640
>dbj|AK121307.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111L20, full insert sequence Length = 3027 Score = 69.9 bits (35), Expect = 7e-09 Identities = 112/137 (81%), Gaps = 3/137 (2%) Strand = Plus / Minus Query: 279 gctcagcaaaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 338 |||||||| ||||||||| ||| | |||||| | ||| || ||||||||||| ||||| Sbjct: 2865 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 2806 Query: 339 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 398 || ||||| | | ||||| ||||||||| ||||||||||||||||| |||||||| Sbjct: 2805 ggagcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcg 2749 Query: 399 tcaaactttatgaactg 415 || ||||| |||||||| Sbjct: 2748 tcgaacttgatgaactg 2732
>dbj|AK064813.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000E08, full insert sequence Length = 3047 Score = 69.9 bits (35), Expect = 7e-09 Identities = 112/137 (81%), Gaps = 3/137 (2%) Strand = Plus / Minus Query: 279 gctcagcaaaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 338 |||||||| ||||||||| ||| | |||||| | ||| || ||||||||||| ||||| Sbjct: 2875 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 2816 Query: 339 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 398 || ||||| | | ||||| ||||||||| ||||||||||||||||| |||||||| Sbjct: 2815 ggagcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcg 2759 Query: 399 tcaaactttatgaactg 415 || ||||| |||||||| Sbjct: 2758 tcgaacttgatgaactg 2742
>dbj|AK061675.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-H03, full insert sequence Length = 772 Score = 69.9 bits (35), Expect = 7e-09 Identities = 112/137 (81%), Gaps = 3/137 (2%) Strand = Plus / Minus Query: 279 gctcagcaaaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 338 |||||||| ||||||||| ||| | |||||| | ||| || ||||||||||| ||||| Sbjct: 574 gctcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcacc 515 Query: 339 gggccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctca 398 || ||||| | | ||||| ||||||||| ||||||||||||||||| |||||||| Sbjct: 514 ggagcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcg 458 Query: 399 tcaaactttatgaactg 415 || ||||| |||||||| Sbjct: 457 tcgaacttgatgaactg 441
>ref|NM_188086.1| Oryza sativa (japonica cultivar-group), Ozsa8518 predicted mRNA Length = 2715 Score = 65.9 bits (33), Expect = 1e-07 Identities = 110/135 (81%), Gaps = 3/135 (2%) Strand = Plus / Minus Query: 281 tcagcaaaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcaccgg 340 |||||| ||||||||| ||| | |||||| | ||| || ||||||||||| ||||||| Sbjct: 2715 tcagcagaagaacatggagctcctgactttgttatgcaggcgaggcagctcgggcaccgg 2656 Query: 341 gccgctggcagtagaggtgtggccaccaccctggctcgacgacgtctcggacatctcatc 400 ||||| | | ||||| ||||||||| ||||||||||||||||| |||||||| || Sbjct: 2655 agcgctgcccgccgaggtatggccacca---tggctcgacgacgtctccgacatctcgtc 2599 Query: 401 aaactttatgaactg 415 ||||| |||||||| Sbjct: 2598 gaacttgatgaactg 2584
>gb|AY111526.1| Zea mays CL881_3 mRNA sequence Length = 628 Score = 50.1 bits (25), Expect = 0.006 Identities = 58/69 (84%) Strand = Plus / Minus Query: 279 gctcagcaaaagaacatgctgctgcggactttctcatggagacgaggcagctcctgcacc 338 |||||||| ||||||||| ||| | ||||||||||| ||||| ||||||||||| || Sbjct: 341 gctcagcagaagaacatggagctcctcactttctcatgcagacggggcagctcctggaca 282 Query: 339 gggccgctg 347 ||| ||||| Sbjct: 281 gggacgctg 273 Score = 50.1 bits (25), Expect = 0.006 Identities = 46/53 (86%) Strand = Plus / Minus Query: 384 gtctcggacatctcatcaaactttatgaactgcgccacctgagcagctgcaag 436 ||||| |||||||| || ||||||||||||||| | ||||| || |||||||| Sbjct: 239 gtctccgacatctcgtcgaactttatgaactgcccaacctgggcggctgcaag 187
>emb|AL606693.3|OSJN00109 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0076A11, complete sequence Length = 127419 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Plus Query: 306 actttctcatggagacgaggcagctcctgcaccgg 340 |||||||||||||| ||||||||||| ||||||| Sbjct: 121801 actttctcatggaggcgaggcagctcaggcaccgg 121835
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Plus Query: 306 actttctcatggagacgaggcagctcctgcaccgg 340 |||||||||||||| ||||||||||| ||||||| Sbjct: 3532506 actttctcatggaggcgaggcagctcaggcaccgg 3532540
>dbj|AK122078.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033119H08, full insert sequence Length = 3385 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Minus Query: 306 actttctcatggagacgaggcagctcctgcaccgg 340 |||||||||||||| ||||||||||| ||||||| Sbjct: 3012 actttctcatggaggcgaggcagctcaggcaccgg 2978
>dbj|AK119248.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-C06, full insert sequence Length = 1885 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Minus Query: 306 actttctcatggagacgaggcagctcctgcaccgg 340 |||||||||||||| ||||||||||| ||||||| Sbjct: 1560 actttctcatggaggcgaggcagctcaggcaccgg 1526
>dbj|AK104539.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H02, full insert sequence Length = 1196 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Minus Query: 306 actttctcatggagacgaggcagctcctgcaccgg 340 |||||||||||||| ||||||||||| ||||||| Sbjct: 871 actttctcatggaggcgaggcagctcaggcaccgg 837
>dbj|AK065274.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L10, full insert sequence Length = 3178 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Minus Query: 306 actttctcatggagacgaggcagctcctgcaccgg 340 |||||||||||||| ||||||||||| ||||||| Sbjct: 2830 actttctcatggaggcgaggcagctcaggcaccgg 2796
>dbj|AK060907.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-035-F07, full insert sequence Length = 1196 Score = 46.1 bits (23), Expect = 0.096 Identities = 32/35 (91%) Strand = Plus / Minus Query: 306 actttctcatggagacgaggcagctcctgcaccgg 340 |||||||||||||| ||||||||||| ||||||| Sbjct: 871 actttctcatggaggcgaggcagctcaggcaccgg 837
>ref|NM_128854.2| Arabidopsis thaliana unknown protein AT2G32940 mRNA, complete cds Length = 2637 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 399 tcaaactttatgaactgcgccacctgagcagctgcaagatg 439 ||||||||| |||| ||||| || ||||| ||||||||||| Sbjct: 2558 tcaaactttgtgaattgcgcaacttgagctgctgcaagatg 2518
>gb|AC003033.3| Arabidopsis thaliana chromosome 2 BAC T21L14 genomic sequence, complete sequence Length = 96801 Score = 42.1 bits (21), Expect = 1.5 Identities = 36/41 (87%) Strand = Plus / Minus Query: 399 tcaaactttatgaactgcgccacctgagcagctgcaagatg 439 ||||||||| |||| ||||| || ||||| ||||||||||| Sbjct: 51188 tcaaactttgtgaattgcgcaacttgagctgctgcaagatg 51148
>gb|AC068483.6| Homo sapiens BAC clone RP11-31G7 from 2, complete sequence Length = 157285 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 391 acatctcatcaaactttatga 411 ||||||||||||||||||||| Sbjct: 140262 acatctcatcaaactttatga 140282
>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1144D11 Length = 157943 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 catcaccaaaagttggaacg 262 |||||||||||||||||||| Sbjct: 111116 catcaccaaaagttggaacg 111097
>dbj|AP003924.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1064G04 Length = 186704 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 243 catcaccaaaagttggaacg 262 |||||||||||||||||||| Sbjct: 41080 catcaccaaaagttggaacg 41061
>dbj|AK112637.1| Ciona intestinalis cDNA, clone:cieg021b15, full insert sequence Length = 2319 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 agcaaaagaacatgctgctg 302 |||||||||||||||||||| Sbjct: 585 agcaaaagaacatgctgctg 604 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,493,310 Number of Sequences: 3902068 Number of extensions: 3493310 Number of successful extensions: 60552 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60424 Number of HSP's gapped (non-prelim): 120 length of query: 442 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 420 effective length of database: 17,147,199,772 effective search space: 7201823904240 effective search space used: 7201823904240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
