ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30h07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT016619.1| Zea mays clone Contig452 mRNA sequence 168 9e-39
2gb|AY104402.1| Zea mays PCO137047 mRNA sequence 168 9e-39
3ref|XM_464667.1| Oryza sativa (japonica cultivar-group), mRNA 141 2e-30
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
5dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic D... 141 2e-30
6dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
7dbj|AK060032.1| Oryza sativa (japonica cultivar-group) cDNA clon... 141 2e-30
8gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome 44 0.34
9ref|XM_450614.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.3
10gb|BT013806.1| Lycopersicon esculentum clone 132727F, mRNA sequence 42 1.3
11ref|XM_763899.1| Giardia lamblia ATCC 50803 hypothetical protein... 42 1.3
12dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete g... 42 1.3
13dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
14dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.3
15dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.3
16gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome 42 1.3
17gb|AC138174.9| Mus musculus, clone RP24-198I22, complete sequence 40 5.2
18emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 i... 40 5.2
19gb|AY527062.1| Mytilus edulis 18S ribosomal RNA gene, partial se... 40 5.2
20gb|AC134763.4| Rattus norvegicus BAC CH230-221M14 (Children's H... 40 5.2
21emb|BX005315.7| Zebrafish DNA sequence from clone DKEY-79E6, com... 40 5.2
22dbj|AB201231.1| Musculista senhousia gene for 18S ribosomal RNA,... 40 5.2
23gb|AF124207.1|AF124207 Musculus senhousei 18S ribosomal RNA gene... 40 5.2
24gb|AF124206.1|AF124206 Musculus discors 18S ribosomal RNA gene, ... 40 5.2
25gb|L33448.1|MSLSRRNAA Mytilus edulis 18S small subunit ribosomal... 40 5.2
26gb|L33449.1|MSLSRRNAB Mytilus californianus 18S small subunit ri... 40 5.2
27gb|L33451.1|MSLSRRNAC Mytilus galloprovincialis isolate Morgat, ... 40 5.2
28gb|L33453.1|MSLSRRNAE Mytilus trossulus strain Pacific strain 1 ... 40 5.2
29gb|L33454.1|MSLSRRNAF Mytilus trossulus strain Pacific strain 2 ... 40 5.2
30gb|L33455.1|MSLSRRNAG Mytilus trossulus strain Pacific strain 3 ... 40 5.2
31emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, com... 40 5.2
32dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 40 5.2
33gb|DQ310715.1| Mytella strigata 18S ribosomal RNA gene, partial ... 40 5.2
34emb|X90960.1|AN18SRRNA A.noae 18S ribosomal RNA gene 40 5.2
35emb|X91403.1|AGEL18S A.gelatinosum 18S ribosomal RNA gene 40 5.2
36gb|L24490.1|MSLMRNAB Mytilus trossulus 18S ribosomal RNA (18S rRNA) 40 5.2
37gb|L24489.1|MSLMRNAA Mytilus edulis 18S ribosomal RNA (18SrRNA) 40 5.2 
>gb|BT016619.1| Zea mays clone Contig452 mRNA sequence
          Length = 1911

 Score =  168 bits (85), Expect = 9e-39
 Identities = 142/161 (88%)
 Strand = Plus / Minus

                                                                        
Query: 203  tgcttgtgagcgagctccttgagaacatttccgaggtcggactcgcccttggtgctcttg 262
            ||||||| ||| |||| |||||||||||| |||||||| | |||| ||||| || |||||
Sbjct: 1769 tgcttgtaagccagcttcttgagaacattgccgaggtcagcctcggccttgatgttcttg 1710

                                                                        
Query: 263  acccacttggccttgatcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctc 322
            ||||| | ||| ||||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct: 1709 acccattgggcattgatcctcaccctctcgatgctctgcctcacagtcctcgcgatgttc 1650

                                                     
Query: 323  gccttggtcctgctcttgaagaactcctctgcctcgtcacc 363
            |||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 1649 gccttggttctgctcttgaaaaactcctccgcctcatcacc 1609
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>gb|AY104402.1| Zea mays PCO137047 mRNA sequence
          Length = 2125

 Score =  168 bits (85), Expect = 9e-39
 Identities = 142/161 (88%)
 Strand = Plus / Minus

                                                                        
Query: 203  tgcttgtgagcgagctccttgagaacatttccgaggtcggactcgcccttggtgctcttg 262
            ||||||| ||| |||| |||||||||||| |||||||| | |||| ||||| || |||||
Sbjct: 1807 tgcttgtaagccagcttcttgagaacattgccgaggtcagcctcggccttgatgttcttg 1748

                                                                        
Query: 263  acccacttggccttgatcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctc 322
            ||||| | ||| ||||||||||||||||||||||||||| |||| |||||||||||| ||
Sbjct: 1747 acccattgggcattgatcctcaccctctcgatgctctgcctcacagtcctcgcgatgttc 1688

                                                     
Query: 323  gccttggtcctgctcttgaagaactcctctgcctcgtcacc 363
            |||||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 1687 gccttggttctgctcttgaaaaactcctccgcctcatcacc 1647
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>ref|XM_464667.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3020

 Score =  141 bits (71), Expect = 2e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                        
Query: 218  tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 277
            |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 2723 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 2664

                                                                        
Query: 278  atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 337
            |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 2663 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 2604

                                   
Query: 338  ttgaagaactcctctgcctcgtc 360
            |||||||||||||| || |||||
Sbjct: 2603 ttgaagaactcctccgcgtcgtc 2581
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  141 bits (71), Expect = 2e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                           
Query: 218     tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 277
               |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 6605319 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 6605260

                                                                           
Query: 278     atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 337
               |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 6605259 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 6605200

                                      
Query: 338     ttgaagaactcctctgcctcgtc 360
               |||||||||||||| || |||||
Sbjct: 6605199 ttgaagaactcctccgcgtcgtc 6605177
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>dbj|AP004996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0027A02
          Length = 140402

 Score =  141 bits (71), Expect = 2e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                         
Query: 218   tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 277
             |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 39694 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 39635

                                                                         
Query: 278   atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 337
             |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 39634 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 39575

                                    
Query: 338   ttgaagaactcctctgcctcgtc 360
             |||||||||||||| || |||||
Sbjct: 39574 ttgaagaactcctccgcgtcgtc 39552
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>dbj|AK066996.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013089H24, full
            insert sequence
          Length = 3020

 Score =  141 bits (71), Expect = 2e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                        
Query: 218  tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 277
            |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 2723 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 2664

                                                                        
Query: 278  atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 337
            |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 2663 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 2604

                                   
Query: 338  ttgaagaactcctctgcctcgtc 360
            |||||||||||||| || |||||
Sbjct: 2603 ttgaagaactcctccgcgtcgtc 2581
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>dbj|AK060032.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-H06, full
           insert sequence
          Length = 977

 Score =  141 bits (71), Expect = 2e-30
 Identities = 125/143 (87%)
 Strand = Plus / Minus

                                                                       
Query: 218 tccttgagaacatttccgaggtcggactcgcccttggtgctcttgacccacttggccttg 277
           |||||||| ||||| || ||||  | |||| || |||||||||  ||||| ||||| |||
Sbjct: 680 tccttgaggacattgcccaggttagcctcggccctggtgctctccacccatttggcattg 621

                                                                       
Query: 278 atcctcaccctctcgatgctctgcttcaccgtcctcgcgatgctcgccttggtcctgctc 337
           |||||||| ||||||||||||||||||||||||||||||||| | ||||| |||||||||
Sbjct: 620 atcctcactctctcgatgctctgcttcaccgtcctcgcgatgttggccttcgtcctgctc 561

                                  
Query: 338 ttgaagaactcctctgcctcgtc 360
           |||||||||||||| || |||||
Sbjct: 560 ttgaagaactcctccgcgtcgtc 538
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>gb|AE008384.1| Methanosarcina mazei strain Goe1, complete genome
          Length = 4096345

 Score = 44.1 bits (22), Expect = 0.34
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 324     ccttggtcctgctcttgaagaa 345
               ||||||||||||||||||||||
Sbjct: 1878602 ccttggtcctgctcttgaagaa 1878581
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>ref|XM_450614.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2984

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 265  ccacttggccttgatcctcaccctctcgatgctctgcttca 305
            |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 2548 ccacctggcgttgatcagcaccctctcgaggctctgcttca 2508
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>gb|BT013806.1| Lycopersicon esculentum clone 132727F, mRNA sequence
          Length = 2861

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 284  accctctcgatgctctgcttcaccgtcct 312
            |||||||| ||||||||||||| ||||||
Sbjct: 2564 accctctcaatgctctgcttcaacgtcct 2536
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>ref|XM_763899.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_180_10079_9540) partial mRNA
          Length = 540

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 337 cttgaagaactcctctgcctc 357
           |||||||||||||||||||||
Sbjct: 132 cttgaagaactcctctgcctc 152
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>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome
          Length = 2696255

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 126     gctcagtcaaaccagcaccac 146
               |||||||||||||||||||||
Sbjct: 1031023 gctcagtcaaaccagcaccac 1031043
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                         
Query: 265      ccacttggccttgatcctcaccctctcgatgctctgcttca 305
                |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 11797072 ccacctggcgttgatcagcaccctctcgaggctctgcttca 11797032
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>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OJ1506_A04
          Length = 114998

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                      
Query: 265   ccacttggccttgatcctcaccctctcgatgctctgcttca 305
             |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 39890 ccacctggcgttgatcagcaccctctcgaggctctgcttca 39850
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>dbj|AK068165.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134N07, full
            insert sequence
          Length = 2985

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 265  ccacttggccttgatcctcaccctctcgatgctctgcttca 305
            |||| |||| ||||||  ||||||||||| |||||||||||
Sbjct: 2549 ccacctggcgttgatcagcaccctctcgaggctctgcttca 2509
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>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome
          Length = 2695903

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 126    gctcagtcaaaccagcaccac 146
              |||||||||||||||||||||
Sbjct: 589854 gctcagtcaaaccagcaccac 589834
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>gb|AC138174.9| Mus musculus, clone RP24-198I22, complete sequence
          Length = 177516

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 82    tttattattaccatattatt 101
             ||||||||||||||||||||
Sbjct: 88583 tttattattaccatattatt 88564
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>emb|BX901956.4| Zebrafish DNA sequence from clone CH211-284C12 in linkage group 3,
             complete sequence
          Length = 197042

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 264   cccacttggccttgatcctc 283
             ||||||||||||||||||||
Sbjct: 10539 cccacttggccttgatcctc 10520
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>gb|AY527062.1| Mytilus edulis 18S ribosomal RNA gene, partial sequence
          Length = 1823

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcgcccttggtgctcttgac 264
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>gb|AC134763.4| Rattus norvegicus  BAC CH230-221M14 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 222524

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 140    gcaccacagggaagagggctgaat 163
              ||||||||||| ||||||||||||
Sbjct: 120255 gcaccacagggcagagggctgaat 120232
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>emb|BX005315.7| Zebrafish DNA sequence from clone DKEY-79E6, complete sequence
          Length = 130903

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 82   tttattattaccatattatt 101
            ||||||||||||||||||||
Sbjct: 8611 tttattattaccatattatt 8630
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>dbj|AB201231.1| Musculista senhousia gene for 18S ribosomal RNA, partial sequence
          Length = 1740

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcgcccttggtgctcttgac 264
           ||||||||||||||||||||
Sbjct: 670 tcgcccttggtgctcttgac 689
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>gb|AF124207.1|AF124207 Musculus senhousei 18S ribosomal RNA gene, partial sequence
          Length = 1778

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcgcccttggtgctcttgac 264
           ||||||||||||||||||||
Sbjct: 687 tcgcccttggtgctcttgac 706
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>gb|AF124206.1|AF124206 Musculus discors 18S ribosomal RNA gene, partial sequence
          Length = 1782

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcgcccttggtgctcttgac 264
           ||||||||||||||||||||
Sbjct: 696 tcgcccttggtgctcttgac 715
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>gb|L33448.1|MSLSRRNAA Mytilus edulis 18S small subunit ribosomal RNA gene, complete
           sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcgcccttggtgctcttgac 264
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33449.1|MSLSRRNAB Mytilus californianus 18S small subunit ribosomal RNA gene,
           complete sequence
          Length = 1825

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcgcccttggtgctcttgac 264
           ||||||||||||||||||||
Sbjct: 715 tcgcccttggtgctcttgac 734
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>gb|L33451.1|MSLSRRNAC Mytilus galloprovincialis isolate Morgat, Bay of Douarnenez, West
           Brittany, France 18S small subunit ribosomal RNA gene,
           complete sequence
          Length = 1826

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcgcccttggtgctcttgac 264
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>gb|L33453.1|MSLSRRNAE Mytilus trossulus strain Pacific strain 1 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcgcccttggtgctcttgac 264
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33454.1|MSLSRRNAF Mytilus trossulus strain Pacific strain 2 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1827

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcgcccttggtgctcttgac 264
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736
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>gb|L33455.1|MSLSRRNAG Mytilus trossulus strain Pacific strain 3 18S small subunit
           ribosomal RNA gene, complete sequence
          Length = 1826

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcgcccttggtgctcttgac 264
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>emb|AL929222.6| Zebrafish DNA sequence from clone DKEY-31N5, complete sequence
          Length = 212599

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 264    cccacttggccttgatcctc 283
              ||||||||||||||||||||
Sbjct: 203503 cccacttggccttgatcctc 203484
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>dbj|AP001561.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-732G1, complete
              sequences
          Length = 195800

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 136    accagcaccacagggaagag 155
              ||||||||||||||||||||
Sbjct: 165694 accagcaccacagggaagag 165675
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>gb|DQ310715.1| Mytella strigata 18S ribosomal RNA gene, partial sequence
          Length = 415

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcgcccttggtgctcttgac 264
           ||||||||||||||||||||
Sbjct: 125 tcgcccttggtgctcttgac 144
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>emb|X90960.1|AN18SRRNA A.noae 18S ribosomal RNA gene
          Length = 1782

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcgcccttggtgctcttgac 264
           ||||||||||||||||||||
Sbjct: 712 tcgcccttggtgctcttgac 731
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>emb|X91403.1|AGEL18S A.gelatinosum 18S ribosomal RNA gene
          Length = 1813

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcgcccttggtgctcttgac 264
           ||||||||||||||||||||
Sbjct: 714 tcgcccttggtgctcttgac 733
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>gb|L24490.1|MSLMRNAB Mytilus trossulus 18S ribosomal RNA (18S rRNA)
          Length = 1826

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcgcccttggtgctcttgac 264
           ||||||||||||||||||||
Sbjct: 716 tcgcccttggtgctcttgac 735
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>gb|L24489.1|MSLMRNAA Mytilus edulis 18S ribosomal RNA (18SrRNA)
          Length = 1826

 Score = 40.1 bits (20), Expect = 5.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 245 tcgcccttggtgctcttgac 264
           ||||||||||||||||||||
Sbjct: 717 tcgcccttggtgctcttgac 736


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,930,422
Number of Sequences: 3902068
Number of extensions: 2930422
Number of successful extensions: 57569
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57449
Number of HSP's gapped (non-prelim): 120
length of query: 392
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 370
effective length of database: 17,147,199,772
effective search space: 6344463915640
effective search space used: 6344463915640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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