ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30h06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MYSP2_DROME (P35416) Paramyosin, short form (Miniparamyosin) 30 3.2
2YAW5_SCHPO (Q10180) Hypothetical protein C3F10.05c in chromosome I 28 7.1

>MYSP2_DROME (P35416) Paramyosin, short form (Miniparamyosin)|
          Length = 640

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 300 KTTGLAVRGSHVPRVRAASLLLLQEQPALREFAADEMVQL 419
           K  GL V+  H+P V    L   +   A+R++ ADE+V+L
Sbjct: 40  KAKGLEVKKPHLPWVSERGLKQYRPSNAVRQYNADEIVRL 79



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>YAW5_SCHPO (Q10180) Hypothetical protein C3F10.05c in chromosome I|
          Length = 326

 Score = 28.5 bits (62), Expect = 7.1
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 151 EQCKPVLLTNECHSMDYHCPAFLLIFLWPSEEN 53
           E+CK +L +  C+   Y CP ++ ++ +  + N
Sbjct: 181 ERCKLLLQSELCNQDSYDCPGYICVYRFEQKNN 213


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,769,719
Number of Sequences: 219361
Number of extensions: 885629
Number of successful extensions: 1528
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2395157885
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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