Clone Name | rbastl30h06 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009092.1| Triticum aestivum clone wkm2c.pk005.b12:fis, full insert mRNA sequence Length = 1012 Score = 54.0 bits (27), Expect = 4e-04 Identities = 57/67 (85%) Strand = Plus / Minus Query: 326 gtcacatgttccacgagtacgcgccgcctccctgctgctcctccaagaacagcccgctct 385 |||| |||||||||||| | ||||| | ||| |||||||| ||| |||||||||||||| Sbjct: 734 gtcagatgttccacgagaagccgccgtcccccggctgctcccccatgaacagcccgctct 675 Query: 386 ccgcgag 392 || |||| Sbjct: 674 ccacgag 668 Score = 46.1 bits (23), Expect = 0.094 Identities = 26/27 (96%) Strand = Plus / Minus Query: 124 tagttaataacactggcttgcactgct 150 |||||||||||||||| |||||||||| Sbjct: 923 tagttaataacactgggttgcactgct 897 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 177 cactctcacataactgaaggtt 198 |||||||||||||||||||||| Sbjct: 883 cactctcacataactgaaggtt 862
>gb|AY506493.1| Triticum aestivum PXB5-like gene, complete sequence Length = 1198 Score = 46.1 bits (23), Expect = 0.094 Identities = 35/39 (89%) Strand = Plus / Plus Query: 15 ccctccgatcgatacaaattgtcactgatttagtacata 53 ||||||||| ||| |||||||| ||||||||||||||| Sbjct: 562 ccctccgattcatataaattgtcgctgatttagtacata 600
>gb|AY506492.1| Triticum aestivum PXB4-like gene, complete sequence Length = 1196 Score = 46.1 bits (23), Expect = 0.094 Identities = 35/39 (89%) Strand = Plus / Plus Query: 15 ccctccgatcgatacaaattgtcactgatttagtacata 53 ||||||||| ||| |||||||| ||||||||||||||| Sbjct: 562 ccctccgattcatataaattgtcgctgatttagtacata 600
>ref|XM_521482.1| PREDICTED: Pan troglodytes similar to coiled-coil domain containing 6 (LOC466080), mRNA Length = 2436 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 347 cgccgcctccctgctgctcctcc 369 ||||||||||||||||||||||| Sbjct: 539 cgccgcctccctgctgctcctcc 561
>ref|NM_005436.2| Homo sapiens coiled-coil domain containing 6 (CCDC6), mRNA Length = 5702 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 347 cgccgcctccctgctgctcctcc 369 ||||||||||||||||||||||| Sbjct: 80 cgccgcctccctgctgctcctcc 102
>gb|BC036757.2| Homo sapiens coiled-coil domain containing 6, mRNA (cDNA clone IMAGE:5549623), containing frame-shift errors Length = 5664 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 347 cgccgcctccctgctgctcctcc 369 ||||||||||||||||||||||| Sbjct: 25 cgccgcctccctgctgctcctcc 47
>gb|BC022284.1| Homo sapiens coiled-coil domain containing 6, mRNA (cDNA clone IMAGE:4762273), containing frame-shift errors Length = 1130 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 347 cgccgcctccctgctgctcctcc 369 ||||||||||||||||||||||| Sbjct: 80 cgccgcctccctgctgctcctcc 102
>emb|X53675.1|TAPEROXIG Wheat (T. aesitvum) mRNA for peroxidase (EC 1.11.1.7) Length = 3240 Score = 46.1 bits (23), Expect = 0.094 Identities = 35/39 (89%) Strand = Plus / Plus Query: 15 ccctccgatcgatacaaattgtcactgatttagtacata 53 ||||||||| ||| |||||||| ||||||||||||||| Sbjct: 1904 ccctccgattcatataaattgtcgctgatttagtacata 1942
>emb|X85228.1|TAPOX2 T.aestivum pox2 gene Length = 1658 Score = 46.1 bits (23), Expect = 0.094 Identities = 35/39 (89%) Strand = Plus / Plus Query: 15 ccctccgatcgatacaaattgtcactgatttagtacata 53 ||||||||| ||| |||||||| ||||||||||||||| Sbjct: 772 ccctccgattcatataaattgtcgctgatttagtacata 810
>gb|AC023904.10| Homo sapiens chromosome 10 clone RP11-369L1, complete sequence Length = 190712 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 347 cgccgcctccctgctgctcctcc 369 ||||||||||||||||||||||| Sbjct: 137123 cgccgcctccctgctgctcctcc 137145
>gb|S77910.1| H4=gene frequently rearranged with the ret proto-oncogene {promoter} [human, Genomic, 447 nt] Length = 447 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 347 cgccgcctccctgctgctcctcc 369 ||||||||||||||||||||||| Sbjct: 395 cgccgcctccctgctgctcctcc 417
>dbj|D90075.1|HUMRETTPC Homo sapiens mRNA for ret-TPC, partial cds Length = 457 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 347 cgccgcctccctgctgctcctcc 369 ||||||||||||||||||||||| Sbjct: 9 cgccgcctccctgctgctcctcc 31
>gb|BC064391.1| Homo sapiens coiled-coil domain containing 6, mRNA (cDNA clone MGC:75097 IMAGE:5745698), complete cds Length = 2700 Score = 46.1 bits (23), Expect = 0.094 Identities = 23/23 (100%) Strand = Plus / Plus Query: 347 cgccgcctccctgctgctcctcc 369 ||||||||||||||||||||||| Sbjct: 12 cgccgcctccctgctgctcctcc 34
>gb|AC104287.8| Drosophila melanogaster X BAC RP98-29P19 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 169557 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 349 ccgcctccctgctgctcctcc 369 ||||||||||||||||||||| Sbjct: 66262 ccgcctccctgctgctcctcc 66282
>gb|AC092747.10| Homo sapiens 12p BAC RP11-582E3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162400 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 66 ggccataagaaaatcagcaag 86 ||||||||||||||||||||| Sbjct: 66730 ggccataagaaaatcagcaag 66750
>gb|AC091609.2| Homo sapiens chromosome 1 clone RP11-109I2, complete sequence Length = 183521 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 351 gcctccctgctgctcctccaa 371 ||||||||||||||||||||| Sbjct: 30861 gcctccctgctgctcctccaa 30841
>gb|AY913765.1|AY913764S2 Gorilla gorilla ZFY (ZFY) gene, complete cds Length = 77986 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 104 atccatgctatggcattcattagtt 128 |||||||||||||||||||| |||| Sbjct: 3014 atccatgctatggcattcatcagtt 2990
>emb|AL954339.10| Zebrafish DNA sequence from clone CH211-221J21 in linkage group 12, complete sequence Length = 203958 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 267 aaaaagttcaaataatctaaa 287 ||||||||||||||||||||| Sbjct: 173021 aaaaagttcaaataatctaaa 173041
>gb|AE003419.2| Drosophila melanogaster chromosome X, section 3 of 74 of the complete sequence Length = 306598 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 ccgcctccctgctgctcctcc 369 ||||||||||||||||||||| Sbjct: 201844 ccgcctccctgctgctcctcc 201824
>emb|AL132651.2|DMC103E12 Drosophila melanogaster cosmid clone 103E12 Length = 42095 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 349 ccgcctccctgctgctcctcc 369 ||||||||||||||||||||| Sbjct: 5289 ccgcctccctgctgctcctcc 5269
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 taaagcgttttacttaaaaa 303 |||||||||||||||||||| Sbjct: 4184318 taaagcgttttacttaaaaa 4184299
>ref|NM_195517.1| Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0082N11.15), mRNA Length = 1692 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 14 ctctccgcgagttcgctgct 33
>ref|NM_196082.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBb0089F16.9), mRNA Length = 2067 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 155 ctctccgcgagttcgctgct 174
>ref|XM_463264.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 225 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 65 ctctccgcgagttcgctgct 84
>gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0074N12, complete sequence Length = 187972 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 91488 ctctccgcgagttcgctgct 91507
>gb|AC164640.4| Mus musculus BAC clone RP23-228M12 from chromosome 7, complete sequence Length = 232468 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 gcctccctgctgctcctcca 370 |||||||||||||||||||| Sbjct: 65603 gcctccctgctgctcctcca 65584
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 18587168 ctctccgcgagttcgctgct 18587187
>gb|AC147344.2| Pan troglodytes BAC clone CH251-4O16 from Y, complete sequence Length = 186607 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 atccatgctatggcattcat 123 |||||||||||||||||||| Sbjct: 127292 atccatgctatggcattcat 127311
>gb|AC127317.3| Mus musculus BAC clone RP23-227H18 from chromosome 7, complete sequence Length = 180376 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 157 tttcccagccagatccctcacact 180 ||||||||||||||||||| |||| Sbjct: 9073 tttcccagccagatccctcccact 9096
>gb|AC132685.3| Mus musculus BAC clone RP23-278G24 from chromosome 7, complete sequence Length = 188989 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 157 tttcccagccagatccctcacact 180 ||||||||||||||||||| |||| Sbjct: 48777 tttcccagccagatccctcccact 48754
>gb|U91324.1|HUU91324 Homo sapiens Chromosome 16 BAC clone CIT987-SKA-100B4 ~complete genomic sequence, complete sequence Length = 174826 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 267 aaaaagttcaaataatctaa 286 |||||||||||||||||||| Sbjct: 107118 aaaaagttcaaataatctaa 107137
>emb|BX571713.11| Zebrafish DNA sequence from clone DKEY-19H21 in linkage group 9, complete sequence Length = 103882 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 aaagttcaaataatctaaag 288 |||||||||||||||||||| Sbjct: 44747 aaagttcaaataatctaaag 44728
>gb|AC146206.3| Pan troglodytes BAC clone CH251-395K13 from Y, complete sequence Length = 161960 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 atccatgctatggcattcat 123 |||||||||||||||||||| Sbjct: 47442 atccatgctatggcattcat 47423
>gb|AE014075.1| Escherichia coli CFT073, complete genome Length = 5231428 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 taaagcgttttacttaaaaa 303 |||||||||||||||||||| Sbjct: 4696710 taaagcgttttacttaaaaa 4696691
>gb|BC049271.1| Mus musculus solute carrier family 38, member 2, mRNA (cDNA clone IMAGE:3984227), partial cds Length = 3659 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 aagttcaaataatctaaagc 289 |||||||||||||||||||| Sbjct: 3386 aagttcaaataatctaaagc 3405
>gb|CP000243.1| Escherichia coli UTI89, complete genome Length = 5065741 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 taaagcgttttacttaaaaa 303 |||||||||||||||||||| Sbjct: 4454014 taaagcgttttacttaaaaa 4453995
>gb|U00096.2| Escherichia coli K-12 MG1655, complete genome Length = 4639675 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 taaagcgttttacttaaaaa 303 |||||||||||||||||||| Sbjct: 4162329 taaagcgttttacttaaaaa 4162310
>gb|AC096691.6| Oryza sativa chromosome 10 BAC OSJNBa0083M08 genomic sequence, complete sequence Length = 106110 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 86000 ctctccgcgagttcgctgct 86019
>gb|U00006.1|ECOUW89 E. coli chromosomal region from 89.2 to 92.8 minutes Length = 176195 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 taaagcgttttacttaaaaa 303 |||||||||||||||||||| Sbjct: 29548 taaagcgttttacttaaaaa 29529
>gb|BC019690.1| Mus musculus solute carrier family 38, member 2, mRNA (cDNA clone IMAGE:3491773), partial cds Length = 1367 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 270 aagttcaaataatctaaagc 289 |||||||||||||||||||| Sbjct: 1085 aagttcaaataatctaaagc 1104
>dbj|BS000560.1| Pan troglodytes chromosome Y clone:PTB-475G01, complete sequences Length = 154648 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 atccatgctatggcattcat 123 |||||||||||||||||||| Sbjct: 107772 atccatgctatggcattcat 107753
>dbj|AP009048.1| Escherichia coli W3110 DNA, complete genome Length = 4646332 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 taaagcgttttacttaaaaa 303 |||||||||||||||||||| Sbjct: 3472375 taaagcgttttacttaaaaa 3472394
>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence Length = 23952694 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 atccatgctatggcattcat 123 |||||||||||||||||||| Sbjct: 23627704 atccatgctatggcattcat 23627723
>gb|AC119072.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0073N20 BAC genomic sequence, complete sequence Length = 147289 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 72720 ctctccgcgagttcgctgct 72739
>gb|AC093181.5| Oryza sativa chromosome 10 BAC OSJNBb0089F16 genomic sequence, complete sequence Length = 154696 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 140742 ctctccgcgagttcgctgct 140723
>gb|AC091735.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0082N11, from chromosome 10, complete sequence Length = 183345 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 73255 ctctccgcgagttcgctgct 73274
>gb|AC093180.12| Oryza sativa chromosome 3 BAC OJ1004_D04 genomic sequence, complete sequence Length = 158170 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 50509 ctctccgcgagttcgctgct 50490
>ref|XM_685624.1| PREDICTED: Danio rerio similar to 2310021P13Rik protein (LOC562226), mRNA Length = 7143 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 cgcctccctgctgctcctcc 369 |||||||||||||||||||| Sbjct: 6150 cgcctccctgctgctcctcc 6169
>gb|BC097203.1| Danio rerio cDNA clone IMAGE:7452926, partial cds Length = 920 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 ctgctgctcctccaagaaca 376 |||||||||||||||||||| Sbjct: 127 ctgctgctcctccaagaaca 108
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 20272863 ctctccgcgagttcgctgct 20272882 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 8640031 ctctccgcgagttcgctgct 8640012
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 6471510 ctctccgcgagttcgctgct 6471491
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 10982632 ctctccgcgagttcgctgct 10982613 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 7439391 ctctccgcgagttcgctgct 7439410
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 13769500 ctctccgcgagttcgctgct 13769519 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 12754309 ctctccgcgagttcgctgct 12754328 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 8718634 ctctccgcgagttcgctgct 8718653
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 cgcgccgcctccctgctgctcctc 368 ||||||||| |||||||||||||| Sbjct: 5036599 cgcgccgccgccctgctgctcctc 5036576
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 20424945 ctctccgcgagttcgctgct 20424964 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 9183831 ctctccgcgagttcgctgct 9183812
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 18581209 ctctccgcgagttcgctgct 18581228
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 16892711 ctctccgcgagttcgctgct 16892692 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 14873935 ctctccgcgagttcgctgct 14873954
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 17513762 ctctccgcgagttcgctgct 17513781
>gb|AC040160.4|AC040160 Homo sapiens chromosome 16 clone CTC-277H1, complete sequence Length = 209574 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 352 cctccctgctgctcctccaagaac 375 |||||| ||||||||||||||||| Sbjct: 99748 cctcccagctgctcctccaagaac 99725
>gb|AY913763.1| Pan troglodytes ZFY (ZFY) gene, complete cds Length = 167166 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 atccatgctatggcattcat 123 |||||||||||||||||||| Sbjct: 17756 atccatgctatggcattcat 17737
>gb|AC116351.2| Homo sapiens chromosome 5 clone RP11-43F13, complete sequence Length = 187289 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 348 gccgcctccctgctgctcctccaa 371 |||||||||| ||||||||||||| Sbjct: 110742 gccgcctcccagctgctcctccaa 110765
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 taaagcgttttacttaaaaa 303 |||||||||||||||||||| Sbjct: 3588901 taaagcgttttacttaaaaa 3588920
>gb|AC010872.8| Homo sapiens BAC clone RP11-83B6 from 2, complete sequence Length = 189507 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 30 aaattgtcactgatttagta 49 |||||||||||||||||||| Sbjct: 80190 aaattgtcactgatttagta 80209
>gb|AF114156.1|AF114156 Homo sapiens Y-linked zinc finger protein (ZFY) gene, complete cds Length = 135849 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 atccatgctatggcattcat 123 |||||||||||||||||||| Sbjct: 98793 atccatgctatggcattcat 98774
>dbj|AP003054.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0436D06 Length = 148246 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 31334 ctctccgcgagttcgctgct 31353
>dbj|AP003491.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0662B01 Length = 155913 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 77853 ctctccgcgagttcgctgct 77834
>dbj|AP004731.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0016D02 Length = 157822 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 148340 ctctccgcgagttcgctgct 148359
>dbj|AP004132.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1089_A02 Length = 117908 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 34816 ctctccgcgagttcgctgct 34797
>dbj|AP004998.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0036H07 Length = 149797 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 93768 ctctccgcgagttcgctgct 93749
>dbj|AP005648.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0055I13 Length = 169486 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 139738 ctctccgcgagttcgctgct 139757
>dbj|AP005124.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0049I08 Length = 144379 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 cgcgccgcctccctgctgctcctc 368 ||||||||| |||||||||||||| Sbjct: 78288 cgcgccgccgccctgctgctcctc 78265
>dbj|AP005498.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0406D01 Length = 163932 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 83569 ctctccgcgagttcgctgct 83588
>dbj|AP005166.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0058D03 Length = 184235 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 98304 ctctccgcgagttcgctgct 98323
>dbj|AP005162.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0051M20 Length = 152702 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 140278 ctctccgcgagttcgctgct 140297
>dbj|AP005478.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBb0070J06 Length = 142303 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 61613 ctctccgcgagttcgctgct 61632
>dbj|AK109791.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-147-D09, full insert sequence Length = 1855 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 345 cgcgccgcctccctgctgctcctc 368 ||||||||| |||||||||||||| Sbjct: 576 cgcgccgccgccctgctgctcctc 553
>gb|AC006157.2|AC006157 Homo sapiens BAC clone RP11-414C23 from Y, complete sequence Length = 154683 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 atccatgctatggcattcat 123 |||||||||||||||||||| Sbjct: 49770 atccatgctatggcattcat 49751
>gb|AC136738.23| Mus musculus chromosome 6, clone RP23-173F22, complete sequence Length = 195153 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 aaaaagttcaaataatctaa 286 |||||||||||||||||||| Sbjct: 27070 aaaaagttcaaataatctaa 27051
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 10988676 ctctccgcgagttcgctgct 10988657 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 7443590 ctctccgcgagttcgctgct 7443609
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 6537977 ctctccgcgagttcgctgct 6537958
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 20199077 ctctccgcgagttcgctgct 20199096 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 8639914 ctctccgcgagttcgctgct 8639895
>emb|AL713944.3|CNS07YPN Oryza sativa chromosome 12, . BAC OJ1116_G12 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 152862 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 137097 ctctccgcgagttcgctgct 137116
>emb|AL844877.2|CNS08CB0 Oryza sativa chromosome 12, . BAC OSJNBb0034B07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 125000 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 102778 ctctccgcgagttcgctgct 102759
>gb|AE005174.2| Escherichia coli O157:H7 EDL933, complete genome Length = 5528445 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 taaagcgttttacttaaaaa 303 |||||||||||||||||||| Sbjct: 5042337 taaagcgttttacttaaaaa 5042318
>dbj|BA000007.2| Escherichia coli O157:H7 DNA, complete genome Length = 5498450 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 taaagcgttttacttaaaaa 303 |||||||||||||||||||| Sbjct: 4973571 taaagcgttttacttaaaaa 4973552
>gb|CP000034.1| Shigella dysenteriae Sd197, complete genome Length = 4369232 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 284 taaagcgttttacttaaaaa 303 |||||||||||||||||||| Sbjct: 3494100 taaagcgttttacttaaaaa 3494119
>gb|AC155918.1| Oryza sativa (japonica cultivar-group) BAC clone OSJNBa0071K05, complete sequence Length = 32941 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 382 ctctccgcgagttcgctgct 401 |||||||||||||||||||| Sbjct: 7156 ctctccgcgagttcgctgct 7175
>gb|AC127320.4| Mus musculus BAC clone RP23-230O23 from chromosome 6, complete sequence Length = 197402 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 267 aaaaagttcaaataatctaa 286 |||||||||||||||||||| Sbjct: 113343 aaaaagttcaaataatctaa 113324
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 taaagcgttttacttaaaaa 303 |||||||||||||||||||| Sbjct: 4022887 taaagcgttttacttaaaaa 4022868
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 taaagcgttttacttaaaaa 303 |||||||||||||||||||| Sbjct: 4383691 taaagcgttttacttaaaaa 4383672
>gb|M10112.1|ECOBTUB E.coli btuB gene for the vitamin B12 receptor protein BtuB Length = 2220 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 284 taaagcgttttacttaaaaa 303 |||||||||||||||||||| Sbjct: 979 taaagcgttttacttaaaaa 960 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,715,644 Number of Sequences: 3902068 Number of extensions: 3715644 Number of successful extensions: 76713 Number of sequences better than 10.0: 91 Number of HSP's better than 10.0 without gapping: 98 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 75977 Number of HSP's gapped (non-prelim): 736 length of query: 430 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 408 effective length of database: 17,147,199,772 effective search space: 6996057506976 effective search space used: 6996057506976 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)