ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl30h03 |
|---|---|
| Clone Library Name | barley_pub |
>COPG2_MOUSE (Q9QXK3) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 39.7 bits (91), Expect = 0.003 Identities = 24/60 (40%), Positives = 32/60 (53%) Frame = -2 Query: 448 PCEGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEVSDKI 269 PCE ++ V N SH L+GVY GG +LVR L+ V M++ VRS + D I Sbjct: 809 PCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALA--DGVTMQVTVRSKERTPVDVI 866
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 39.7 bits (91), Expect = 0.003 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%) Frame = -2 Query: 448 PCEGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLS-GPKEVAMKLAVRSDDPEVSDK 272 PCE ++ V H LSGV+ GG VL + + + +AM + ++S++P V+D Sbjct: 805 PCERSDRVPEGKTQHTVFLSGVFRGGYDVLSKATVAVDPNDNSIAMNIIIKSNEPLVADL 864 Query: 271 I 269 + Sbjct: 865 V 865
>COPG2_HUMAN (Q9UBF2) Coatomer subunit gamma-2 (Gamma-2 coat protein) (Gamma-2| COP) Length = 871 Score = 37.7 bits (86), Expect = 0.013 Identities = 22/60 (36%), Positives = 32/60 (53%) Frame = -2 Query: 448 PCEGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEVSDKI 269 PCE ++ V N SH L+G++ GG +LVR L+ V M++ VRS + D I Sbjct: 809 PCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRLALA--DGVTMQVTVRSKERTPVDVI 866
>COPG_BOVIN (P53620) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 35.8 bits (81), Expect = 0.050 Identities = 20/53 (37%), Positives = 29/53 (54%) Frame = -2 Query: 448 PCEGTEVVSSNARSHVCLLSGVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDD 290 PCE ++ V N +H LL+GV+ GG +LVR L V M++ RS + Sbjct: 812 PCERSDKVPDNKNTHTLLLAGVFRGGHDILVRSRLLLL--DTVTMQVTARSSE 862
>COPG_HUMAN (Q9Y678) Coatomer subunit gamma (Gamma-coat protein) (Gamma-COP)| Length = 874 Score = 35.0 bits (79), Expect = 0.086 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = -2 Query: 448 PCEGTEVVSSNARSHVCLLSGVYIGGVKVLVR 353 PCE ++ V N +H LL+GV+ GG +LVR Sbjct: 812 PCERSDKVPDNKNTHTLLLAGVFRGGHDILVR 843
>ERA_DEIRA (Q9RWM0) GTP-binding protein era homolog| Length = 311 Score = 30.8 bits (68), Expect = 1.6 Identities = 18/47 (38%), Positives = 23/47 (48%) Frame = +3 Query: 288 GSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTPDSRHTCDLALLDT 428 G S L +F+ T + P SP TR IYT D+R L +DT Sbjct: 29 GKSTLLNAFLGTKVAPTSPRPQTTRRGVRGIYTLDNR---QLIFVDT 72
>HN_PI3HW (P12565) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 30.4 bits (67), Expect = 2.1 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +3 Query: 279 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 428 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGTITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HX (P12566) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 3.6 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +3 Query: 279 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 428 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HV (P12564) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 3.6 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +3 Query: 279 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 428 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HU (P12563) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 3.6 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +3 Query: 279 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 428 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HT (P12562) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 3.6 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +3 Query: 279 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 428 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3HA (P12561) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 3.6 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +3 Query: 279 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 428 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3H4 (P08492) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 3.6 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +3 Query: 279 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIYTP----DSRHTCDLALLDT 428 +T G D+ S+ +G ++ N +L P I D+R +C LALL+T Sbjct: 210 ITRGCQDIGKSYQVLQIGIITVNSDLVPDLNPRISHTFNINDNRKSCSLALLNT 263
>HN_PI3B (P06167) Hemagglutinin-neuraminidase (EC 3.2.1.18)| Length = 572 Score = 29.6 bits (65), Expect = 3.6 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 4/54 (7%) Frame = +3 Query: 279 LTSGSSDLTASFIATSLGPLSPNDNLTRTFTPPIY----TPDSRHTCDLALLDT 428 +T G D+ S+ +G ++ N +L P + D+R +C LALL+T Sbjct: 210 ITQGCQDIGKSYQVLQIGIITINSDLVPDLNPRVTHTFNIDDNRKSCSLALLNT 263
>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 4.7 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 388 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 281 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 4.7 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 388 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 281 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 4.7 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 388 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 281 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 4.7 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 388 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 281 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 4.7 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 388 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 281 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 29.3 bits (64), Expect = 4.7 Identities = 11/36 (30%), Positives = 21/36 (58%) Frame = -2 Query: 388 GVYIGGVKVLVRLSFGLSGPKEVAMKLAVRSDDPEV 281 G + V L R+ +G+ P+EV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>CLN3_MACFA (Q60HH0) Protein CLN3 (Battenin)| Length = 438 Score = 28.5 bits (62), Expect = 8.1 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +3 Query: 243 FYPLATISWILSLTSGSSDLTA-SFIATSLGPLSPNDNL 356 FYP A ISW S T G+ L A S++ + LSP L Sbjct: 175 FYPRAVISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTL 213
>CLN3_HUMAN (Q13286) Protein CLN3 (Battenin) (Batten disease protein)| Length = 438 Score = 28.5 bits (62), Expect = 8.1 Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%) Frame = +3 Query: 243 FYPLATISWILSLTSGSSDLTA-SFIATSLGPLSPNDNL 356 FYP A ISW S T G+ L A S++ + LSP L Sbjct: 175 FYPRAVISWWSSGTGGAGLLGALSYLGLTQAGLSPQQTL 213 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,369,441 Number of Sequences: 219361 Number of extensions: 1118333 Number of successful extensions: 2888 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 2827 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2888 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
