ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30g12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC093244.2| Homo sapiens chromosome 5 clone RP11-113I22, comp... 42 0.87
2gb|AC091819.3| Homo sapiens chromosome 5 clone CTC-264O10, compl... 42 0.87
3gb|AC011395.5| Homo sapiens chromosome 5 clone CTB-187I2, comple... 42 0.87
4gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, co... 42 0.87
5emb|AL365475.1|CNS05TF6 Human chromosome 14 DNA sequence BAC R-4... 42 0.87
6emb|AL355833.4|CNS05TCS Human chromosome 14 DNA sequence BAC R-2... 42 0.87
7ref|XM_955361.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.4
8ref|XM_325346.1| Neurospora crassa OR74A hypothetical protein (N... 40 3.4
9gb|AC105459.1| Homo sapiens BAC clone RP11-115D14 from 7, comple... 40 3.4
10emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4-39c2... 40 3.4
11emb|Z70686.1|CER10H10 Caenorhabditis elegans Cosmid R10H10, comp... 40 3.4
12emb|BX649493.8| Zebrafish DNA sequence from clone CH211-226H23 i... 40 3.4
13emb|BX510648.5| Zebrafish DNA sequence from clone CH211-155O9 in... 40 3.4
14emb|BX294181.5| Zebrafish DNA sequence from clone CH211-284E13 i... 40 3.4
15gb|U20142.1|CEU20142 Caenorhabditis elegans SPE-26 protein (spe-... 40 3.4

>gb|AC093244.2| Homo sapiens chromosome 5 clone RP11-113I22, complete sequence
          Length = 85927

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 128   aacaaaaagaaccaccaggcaacat 152
             ||||||||||||||||||| |||||
Sbjct: 64062 aacaaaaagaaccaccagggaacat 64038



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>gb|AC091819.3| Homo sapiens chromosome 5 clone CTC-264O10, complete sequence
          Length = 118603

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 61    ttgagattaataactgtttta 81
             |||||||||||||||||||||
Sbjct: 40202 ttgagattaataactgtttta 40222



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>gb|AC011395.5| Homo sapiens chromosome 5 clone CTB-187I2, complete sequence
          Length = 96489

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 61    ttgagattaataactgtttta 81
             |||||||||||||||||||||
Sbjct: 38118 ttgagattaataactgtttta 38098



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>gb|AC115004.14| Mus musculus chromosome 3, clone RP24-182K13, complete sequence
          Length = 141316

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 59     gtttgagattaataactgttt 79
              |||||||||||||||||||||
Sbjct: 104503 gtttgagattaataactgttt 104523



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>emb|AL365475.1|CNS05TF6 Human chromosome 14 DNA sequence BAC R-452D12 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 187947

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 189   ctgttgctgccaagcaacaaa 209
             |||||||||||||||||||||
Sbjct: 23296 ctgttgctgccaagcaacaaa 23276



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>emb|AL355833.4|CNS05TCS Human chromosome 14 DNA sequence BAC R-262M8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 197817

 Score = 42.1 bits (21), Expect = 0.87
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 189   ctgttgctgccaagcaacaaa 209
             |||||||||||||||||||||
Sbjct: 79825 ctgttgctgccaagcaacaaa 79805



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>ref|XM_955361.1| Neurospora crassa OR74A hypothetical protein (NCU05492.1) partial
           mRNA
          Length = 1677

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 catattcaagatcggtttcg 169
           ||||||||||||||||||||
Sbjct: 133 catattcaagatcggtttcg 114



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>ref|XM_325346.1| Neurospora crassa OR74A hypothetical protein (NCU05492.1) partial
           mRNA
          Length = 1677

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 150 catattcaagatcggtttcg 169
           ||||||||||||||||||||
Sbjct: 133 catattcaagatcggtttcg 114



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>gb|AC105459.1| Homo sapiens BAC clone RP11-115D14 from 7, complete sequence
          Length = 146098

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    aaagtttgagattaataact 75
             ||||||||||||||||||||
Sbjct: 41703 aaagtttgagattaataact 41684



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>emb|CT025840.2| Medicago truncatula chromosome 5 clone mth4-39c23, COMPLETE SEQUENCE
          Length = 243542

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 43    ttcatggttcacaaaagttt 62
             ||||||||||||||||||||
Sbjct: 21528 ttcatggttcacaaaagttt 21547



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>emb|Z70686.1|CER10H10 Caenorhabditis elegans Cosmid R10H10, complete sequence
          Length = 35056

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 76   gttttatgccaaaaattgtt 95
            ||||||||||||||||||||
Sbjct: 7906 gttttatgccaaaaattgtt 7925



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>emb|BX649493.8| Zebrafish DNA sequence from clone CH211-226H23 in linkage group 2,
             complete sequence
          Length = 175551

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 219   agcctaattgtaactggggt 238
             ||||||||||||||||||||
Sbjct: 26346 agcctaattgtaactggggt 26327



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>emb|BX510648.5| Zebrafish DNA sequence from clone CH211-155O9 in linkage group 5,
            complete sequence
          Length = 191453

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 55   aaaagtttgagattaataac 74
            ||||||||||||||||||||
Sbjct: 6005 aaaagtttgagattaataac 5986



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>emb|BX294181.5| Zebrafish DNA sequence from clone CH211-284E13 in linkage group 5,
            complete sequence
          Length = 171388

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 55   aaaagtttgagattaataac 74
            ||||||||||||||||||||
Sbjct: 9151 aaaagtttgagattaataac 9170



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>gb|U20142.1|CEU20142 Caenorhabditis elegans SPE-26 protein (spe-26) gene, complete cds
          Length = 3987

 Score = 40.1 bits (20), Expect = 3.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 76   gttttatgccaaaaattgtt 95
            ||||||||||||||||||||
Sbjct: 3211 gttttatgccaaaaattgtt 3192


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,732,931
Number of Sequences: 3902068
Number of extensions: 2732931
Number of successful extensions: 50688
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 50659
Number of HSP's gapped (non-prelim): 29
length of query: 264
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 242
effective length of database: 17,147,199,772
effective search space: 4149622344824
effective search space used: 4149622344824
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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