ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FUCTC_DROME (P83088) Alpha-(1,3)-fucosyltransferase C (EC 2.4.1.... 28 4.6
2NUOL_STRCO (Q9XAR5) NADH-quinone oxidoreductase chain L (EC 1.6.... 28 4.6
3MEGF9_MOUSE (Q8BH27) Multiple epidermal growth factor-like domai... 28 7.8

>FUCTC_DROME (P83088) Alpha-(1,3)-fucosyltransferase C (EC 2.4.1.-) (Galactoside|
           3-L-fucosyltransferase)
          Length = 425

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = -2

Query: 237 DTTGSCNRCSCAMFSSSSHCLGVLDPEYFVYI 142
           D  G+C   SC       HC  +LD +YF Y+
Sbjct: 272 DIYGNCGTLSCTR--GDPHCAEMLDTDYFFYL 301



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>NUOL_STRCO (Q9XAR5) NADH-quinone oxidoreductase chain L (EC 1.6.99.5) (NADH|
           dehydrogenase I, chain L) (NDH-1, chain L)
          Length = 654

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = -3

Query: 251 HGRSQILLGAVTDAAVPCSVVQVTV 177
           HG S I  GAVT A V C V+ V V
Sbjct: 523 HGDSPISAGAVTGATVACMVIGVAV 547



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>MEGF9_MOUSE (Q8BH27) Multiple epidermal growth factor-like domains 9 precursor|
           (EGF-like domain-containing protein 5) (Multiple
           EGF-like domain protein 5)
          Length = 600

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -2

Query: 240 PDTTGSCNRCSCAMFSSSSHCL---GVLDP 160
           PD    C+RC C+  +S+ +C    G L+P
Sbjct: 338 PDAAKQCHRCPCSAVTSTGNCTIESGELEP 367


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,050,124
Number of Sequences: 219361
Number of extensions: 672832
Number of successful extensions: 1669
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1669
length of database: 80,573,946
effective HSP length: 73
effective length of database: 64,560,593
effective search space used: 1549454232
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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