Clone Name | rbastl30g10 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_475639.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2397 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ttcaaaagcaccattggctt 113 |||||||||||||||||||| Sbjct: 771 ttcaaaagcaccattggctt 790
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 tgttacagctcccagtagtatctg 239 ||||||||||| |||||||||||| Sbjct: 16390106 tgttacagctctcagtagtatctg 16390129
>gb|AC133932.4| Oryza sativa chromosome 3 BAC OSJNBb0074M06 genomic sequence, complete sequence Length = 146775 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 216 tgttacagctcccagtagtatctg 239 ||||||||||| |||||||||||| Sbjct: 77104 tgttacagctctcagtagtatctg 77081
>emb|AL669884.7| Mouse DNA sequence from clone RP23-451A6 on chromosome 11 Contains two genes for novel proteins and two CpG islands, complete sequence Length = 137573 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 206 cagctgcatctgttacagct 225 |||||||||||||||||||| Sbjct: 17213 cagctgcatctgttacagct 17194
>gb|AC087600.21| Homo sapiens 12q BAC RP11-495C23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 185454 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 142 gatatacacaaaatattcag 161 |||||||||||||||||||| Sbjct: 62689 gatatacacaaaatattcag 62708
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 216 tgttacagctcccagtagtatctg 239 ||||||||||| |||||||||||| Sbjct: 16383739 tgttacagctctcagtagtatctg 16383762
>gb|AC025910.19|AC025910 Mus musculus 11 BAC RP23-40J4 (Roswell Park Cancer Institute Mouse BAC) complete sequence Length = 240536 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 cagctgcatctgttacagct 225 |||||||||||||||||||| Sbjct: 13351 cagctgcatctgttacagct 13370
>gb|AC069471.4|AC069471 Arabidopsis thaliana chromosome 1 BAC F13K9 genomic sequence, complete sequence Length = 126991 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 acatcaaaagccttactgca 139 |||||||||||||||||||| Sbjct: 3203 acatcaaaagccttactgca 3184
>gb|AC079280.4|AC079280 Arabidopsis thaliana chromosome 1 BAC F28L5 genomic sequence, complete sequence Length = 48404 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 acatcaaaagccttactgca 139 |||||||||||||||||||| Sbjct: 45944 acatcaaaagccttactgca 45925
>gb|AC026682.14|AC026682 Mus musculus 11 BAC RP23-201K2 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 202655 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 206 cagctgcatctgttacagct 225 |||||||||||||||||||| Sbjct: 161058 cagctgcatctgttacagct 161077
>ref|XM_577174.1| PREDICTED: Rattus norvegicus similar to pactolus; integrin beta subunit-like cell-surface protein (LOC363751), mRNA Length = 1563 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 204 cacagctgcatctgttacag 223 |||||||||||||||||||| Sbjct: 1177 cacagctgcatctgttacag 1158
>dbj|AK099832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106A22, full insert sequence Length = 2422 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ttcaaaagcaccattggctt 113 |||||||||||||||||||| Sbjct: 485 ttcaaaagcaccattggctt 504
>dbj|AK072427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089J15, full insert sequence Length = 2428 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 ttcaaaagcaccattggctt 113 |||||||||||||||||||| Sbjct: 485 ttcaaaagcaccattggctt 504
>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome Length = 1080084 Score = 40.1 bits (20), Expect = 3.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 atacacaaaatattcaggat 164 |||||||||||||||||||| Sbjct: 322076 atacacaaaatattcaggat 322057
>emb|AL672190.14| Mouse DNA sequence from clone RP23-150G4 on chromosome X, complete sequence Length = 198693 Score = 40.1 bits (20), Expect = 3.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 ttctacatcaaaagccttactgca 139 |||||| ||||||||||||||||| Sbjct: 91892 ttctacctcaaaagccttactgca 91869 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,577,264 Number of Sequences: 3902068 Number of extensions: 2577264 Number of successful extensions: 44076 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 15 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 44044 Number of HSP's gapped (non-prelim): 32 length of query: 295 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 273 effective length of database: 17,147,199,772 effective search space: 4681185537756 effective search space used: 4681185537756 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)