ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30g10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_475639.1| Oryza sativa (japonica cultivar-group), predic... 40 3.9
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 3.9
3gb|AC133932.4| Oryza sativa chromosome 3 BAC OSJNBb0074M06 genom... 40 3.9
4emb|AL669884.7| Mouse DNA sequence from clone RP23-451A6 on chro... 40 3.9
5gb|AC087600.21| Homo sapiens 12q BAC RP11-495C23 (Roswell Park C... 40 3.9
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 3.9
7gb|AC025910.19|AC025910 Mus musculus 11 BAC RP23-40J4 (Roswell P... 40 3.9
8gb|AC069471.4|AC069471 Arabidopsis thaliana chromosome 1 BAC F13... 40 3.9
9gb|AC079280.4|AC079280 Arabidopsis thaliana chromosome 1 BAC F28... 40 3.9
10gb|AC026682.14|AC026682 Mus musculus 11 BAC RP23-201K2 (Roswell ... 40 3.9
11ref|XM_577174.1| PREDICTED: Rattus norvegicus similar to pactolu... 40 3.9
12dbj|AK099832.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.9
13dbj|AK072427.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 3.9
14gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malay... 40 3.9
15emb|AL672190.14| Mouse DNA sequence from clone RP23-150G4 on chr... 40 3.9

>ref|XM_475639.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2397

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  ttcaaaagcaccattggctt 113
           ||||||||||||||||||||
Sbjct: 771 ttcaaaagcaccattggctt 790



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 216      tgttacagctcccagtagtatctg 239
                ||||||||||| ||||||||||||
Sbjct: 16390106 tgttacagctctcagtagtatctg 16390129



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>gb|AC133932.4| Oryza sativa chromosome 3 BAC OSJNBb0074M06 genomic sequence, complete
             sequence
          Length = 146775

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 216   tgttacagctcccagtagtatctg 239
             ||||||||||| ||||||||||||
Sbjct: 77104 tgttacagctctcagtagtatctg 77081



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>emb|AL669884.7| Mouse DNA sequence from clone RP23-451A6 on chromosome 11 Contains two
             genes for novel proteins and two CpG islands, complete
             sequence
          Length = 137573

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 206   cagctgcatctgttacagct 225
             ||||||||||||||||||||
Sbjct: 17213 cagctgcatctgttacagct 17194



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>gb|AC087600.21| Homo sapiens 12q BAC RP11-495C23 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 185454

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 142   gatatacacaaaatattcag 161
             ||||||||||||||||||||
Sbjct: 62689 gatatacacaaaatattcag 62708



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 216      tgttacagctcccagtagtatctg 239
                ||||||||||| ||||||||||||
Sbjct: 16383739 tgttacagctctcagtagtatctg 16383762



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>gb|AC025910.19|AC025910 Mus musculus 11 BAC RP23-40J4 (Roswell Park Cancer Institute Mouse BAC)
             complete sequence
          Length = 240536

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 206   cagctgcatctgttacagct 225
             ||||||||||||||||||||
Sbjct: 13351 cagctgcatctgttacagct 13370



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>gb|AC069471.4|AC069471 Arabidopsis thaliana chromosome 1 BAC F13K9 genomic sequence,
            complete sequence
          Length = 126991

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 120  acatcaaaagccttactgca 139
            ||||||||||||||||||||
Sbjct: 3203 acatcaaaagccttactgca 3184



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>gb|AC079280.4|AC079280 Arabidopsis thaliana chromosome 1 BAC F28L5 genomic sequence, complete
             sequence
          Length = 48404

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 120   acatcaaaagccttactgca 139
             ||||||||||||||||||||
Sbjct: 45944 acatcaaaagccttactgca 45925



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>gb|AC026682.14|AC026682 Mus musculus 11 BAC RP23-201K2 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 202655

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    cagctgcatctgttacagct 225
              ||||||||||||||||||||
Sbjct: 161058 cagctgcatctgttacagct 161077



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>ref|XM_577174.1| PREDICTED: Rattus norvegicus similar to pactolus; integrin beta
            subunit-like cell-surface protein (LOC363751), mRNA
          Length = 1563

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 204  cacagctgcatctgttacag 223
            ||||||||||||||||||||
Sbjct: 1177 cacagctgcatctgttacag 1158



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>dbj|AK099832.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106A22, full
           insert sequence
          Length = 2422

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  ttcaaaagcaccattggctt 113
           ||||||||||||||||||||
Sbjct: 485 ttcaaaagcaccattggctt 504



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>dbj|AK072427.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089J15, full
           insert sequence
          Length = 2428

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 94  ttcaaaagcaccattggctt 113
           ||||||||||||||||||||
Sbjct: 485 ttcaaaagcaccattggctt 504



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>gb|AE017321.1| Wolbachia endosymbiont strain TRS of Brugia malayi, complete genome
          Length = 1080084

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 145    atacacaaaatattcaggat 164
              ||||||||||||||||||||
Sbjct: 322076 atacacaaaatattcaggat 322057



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>emb|AL672190.14| Mouse DNA sequence from clone RP23-150G4 on chromosome X, complete
             sequence
          Length = 198693

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 116   ttctacatcaaaagccttactgca 139
             |||||| |||||||||||||||||
Sbjct: 91892 ttctacctcaaaagccttactgca 91869


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,577,264
Number of Sequences: 3902068
Number of extensions: 2577264
Number of successful extensions: 44076
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44044
Number of HSP's gapped (non-prelim): 32
length of query: 295
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 273
effective length of database: 17,147,199,772
effective search space: 4681185537756
effective search space used: 4681185537756
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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