ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl30g09 |
|---|---|
| Clone Library Name | barley_pub |
>CWF19_SCHPO (Q09909) Cell cycle control protein cwf19| Length = 639 Score = 33.9 bits (76), Expect = 0.096 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +2 Query: 290 NQTGCETFHPGTENHHHSRHGNPGHPCHFGTHRPA 394 N+T ET H HHHSRH H H + RP+ Sbjct: 16 NETDRETNHSRRHRHHHSRHRESKHGRHDRSERPS 50
>SEPP1_RAT (P25236) Selenoprotein P precursor (SeP) [Contains: Selenoprotein| Se-P10; Selenoprotein Se-P6; Selenoprotein Se-P2; Selenoprotein Se-P1] Length = 385 Score = 30.4 bits (67), Expect = 1.1 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = +2 Query: 296 TGCETFHPGTENHHHSRHGNPGHPCHFGTHRPA 394 T +T P E++HH H GH H G+ +P+ Sbjct: 193 TASKTTEPSEEHNHHKHHDKHGHE-HLGSSKPS 224
>CAUP_DROME (P54269) Homeobox protein caupolican| Length = 693 Score = 30.4 bits (67), Expect = 1.1 Identities = 14/55 (25%), Positives = 21/55 (38%) Frame = +2 Query: 218 YQTSNFYRACLGSPRVHCHPL*TRNQTGCETFHPGTENHHHSRHGNPGHPCHFGT 382 Y NFY ++ PL Q + ++HHH H +P H G+ Sbjct: 480 YLGQNFYPPSSADQQLPHQPLQQHQQQQLQQLQQQQQHHHHPHHHHPHHSMELGS 534
>LMBN_STRLN (Q54367) Lincomycin biosynthesis protein lmbN| Length = 275 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/47 (34%), Positives = 18/47 (38%) Frame = +1 Query: 169 CGNNASRQPCSEFIADLSDF*FLPGLFRFTTRPLPSPLDEEPDWLRD 309 CGN S S F ADL+ +PG R T L W D Sbjct: 126 CGNGGSASTASHFAADLAKLTIVPGQRRMRTLCLNDNASAFSAWTND 172
>YDH4_SCHPO (Q92349) Hypothetical protein C6G9.04 in chromosome I| Length = 1318 Score = 28.1 bits (61), Expect = 5.3 Identities = 9/17 (52%), Positives = 14/17 (82%) Frame = -3 Query: 78 DLYHGSEDYIFTPVFDI 28 DLY+GS+DYI +P+ + Sbjct: 796 DLYYGSDDYIHSPILQV 812
>ERC2_MOUSE (Q6PH08) ERC protein 2 (CAZ-associated structural protein 1) (CAST1)| Length = 957 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = +2 Query: 305 ETFHPGTENHHHSRHGNPGHPCHFGTHRPA 394 E H +HHH H +PG H HRP+ Sbjct: 918 EDHHHYHHHHHHHHHRSPGRSQH-SNHRPS 946
>LRCH1_HUMAN (Q9Y2L9) Leucine-rich repeats and calponin homology| domain-containing protein 1 (Calponin homology domain-containing protein 1) (Neuronal protein 81) (NP81) Length = 728 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/18 (50%), Positives = 10/18 (55%) Frame = +2 Query: 314 HPGTENHHHSRHGNPGHP 367 HP +HHH HG G P Sbjct: 25 HPHHHHHHHQHHGGTGAP 42
>Y2392_ARCFU (O30279) Hypothetical protein AF2392| Length = 86 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 3/27 (11%) Frame = -3 Query: 384 WVPK*QGWPGFPWRLWWWF---SVPGW 313 W+P GW G WR WW+ +PGW Sbjct: 4 WMP---GWGGRGWR--WWYRATGLPGW 25
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 27.7 bits (60), Expect = 6.9 Identities = 14/40 (35%), Positives = 14/40 (35%) Frame = +2 Query: 266 HCHPL*TRNQTGCETFHPGTENHHHSRHGNPGHPCHFGTH 385 H HP E H HHH H P H H G H Sbjct: 79 HHHPEEHHEPHHEEHHHHHPHPHHHHHHHPPHHHHHLGHH 118 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/24 (41%), Positives = 12/24 (50%) Frame = +2 Query: 314 HPGTENHHHSRHGNPGHPCHFGTH 385 H G +HHH HG+ H H H Sbjct: 221 HHGHHHHHHHHHGHHHHHHHHHGH 244
>POU23_BRARE (P79745) POU domain protein ZP-23| Length = 443 Score = 27.3 bits (59), Expect = 9.0 Identities = 12/31 (38%), Positives = 16/31 (51%) Frame = +2 Query: 287 RNQTGCETFHPGTENHHHSRHGNPGHPCHFG 379 +N +G + H GT HH + H P H H G Sbjct: 119 KNNSGRDDLHSGTALHHRAPHLGP-HQTHAG 148
>PKNA2_BIFLO (Q8G4G1) Probable serine/threonine-protein kinase pknA2 (EC| 2.7.11.1) Length = 757 Score = 27.3 bits (59), Expect = 9.0 Identities = 9/16 (56%), Positives = 11/16 (68%), Gaps = 2/16 (12%) Frame = -3 Query: 339 WWWFSVPG--WKVSQP 298 WWWF+ PG W V +P Sbjct: 445 WWWFAGPGSYWSVPKP 460
>CC020_HUMAN (Q8ND61) Protein C3orf20| Length = 904 Score = 27.3 bits (59), Expect = 9.0 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +2 Query: 254 SPRVHCHPL*TRNQTGCETFHPGTENHHHSRHGNPG 361 +P +H P QT T HP + NHH S+H G Sbjct: 332 TPGLHYPPT-AGAQTLSPTSHPSSANHHFSQHCQEG 366
>IPMK_MOUSE (Q7TT16) Inositol polyphosphate multikinase (EC 2.7.1.151)| (Inositol 1,3,4,6-tetrakisphosphate 5-kinase) Length = 396 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 8/63 (12%) Frame = +2 Query: 101 LGKIYDR*QKLQKYSKR*QVLNGAETMLQDNLARNLSQIYQTSN--------FYRACLGS 256 L K Y R +KL + Q ET+ QDN R++SQ + N FY G Sbjct: 294 LSKAYSRHRKLYAKKHQSQTSLKVETLEQDNGWRSMSQEHLNGNVLAQLEKVFYHLPAGR 353 Query: 257 PRV 265 P + Sbjct: 354 PEI 356
>GSC_DROME (P54366) Homeobox protein goosecoid| Length = 419 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = +2 Query: 320 GTENHHHSRHGNPGHPCHFGTH 385 G +H H HG+P HP H G H Sbjct: 247 GHGHHPHHPHGHPHHP-HLGAH 267 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,858,374 Number of Sequences: 219361 Number of extensions: 948703 Number of successful extensions: 2598 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 2429 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2566 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
