Clone Name | rbastl30g09 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_506148.1| PREDICTED Oryza sativa (japonica cultivar-group), P0474G09.102 mRNA Length = 3214 Score = 95.6 bits (48), Expect = 1e-16 Identities = 77/86 (89%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 289 gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 345 |||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| Sbjct: 2911 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2852 Query: 346 ccacgggaaccctggccacccctgtc 371 |||||||||||||| | ||||||||| Sbjct: 2851 ccacgggaaccctgactacccctgtc 2826
>ref|XM_476451.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3207 Score = 95.6 bits (48), Expect = 1e-16 Identities = 77/86 (89%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 289 gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 345 |||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| Sbjct: 2904 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2845 Query: 346 ccacgggaaccctggccacccctgtc 371 |||||||||||||| | ||||||||| Sbjct: 2844 ccacgggaaccctgactacccctgtc 2819
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 95.6 bits (48), Expect = 1e-16 Identities = 77/86 (89%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 289 gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 345 |||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| Sbjct: 1277414 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 1277355 Query: 346 ccacgggaaccctggccacccctgtc 371 |||||||||||||| | ||||||||| Sbjct: 1277354 ccacgggaaccctgactacccctgtc 1277329
>dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0474G09 Length = 169511 Score = 95.6 bits (48), Expect = 1e-16 Identities = 77/86 (89%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 289 gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 345 |||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| Sbjct: 42249 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 42190 Query: 346 ccacgggaaccctggccacccctgtc 371 |||||||||||||| | ||||||||| Sbjct: 42189 ccacgggaaccctgactacccctgtc 42164
>dbj|AK101000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023147D18, full insert sequence Length = 3206 Score = 95.6 bits (48), Expect = 1e-16 Identities = 77/86 (89%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 289 gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 345 |||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| Sbjct: 2903 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2844 Query: 346 ccacgggaaccctggccacccctgtc 371 |||||||||||||| | ||||||||| Sbjct: 2843 ccacgggaaccctgactacccctgtc 2818
>dbj|AK070529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023060K11, full insert sequence Length = 3214 Score = 95.6 bits (48), Expect = 1e-16 Identities = 77/86 (89%), Gaps = 3/86 (3%) Strand = Plus / Minus Query: 289 gaaccagactggttgcgagaccttcc---atcctggaaccgagaaccaccaccatagccg 345 |||||||||||||||||||||||||| ||| ||||| || ||||||||||||||||| Sbjct: 2911 gaaccagactggttgcgagaccttcccccatcttggaagcgcgaaccaccaccatagcct 2852 Query: 346 ccacgggaaccctggccacccctgtc 371 |||||||||||||| | ||||||||| Sbjct: 2851 ccacgggaaccctgactacccctgtc 2826
>ref|XM_463934.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2784 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 313 ccatcctggaaccgagaaccaccaccatagccgccacgggaaccctg 359 ||||||||||| || ||||||||||||||||| ||||| |||||||| Sbjct: 2714 ccatcctggaagcgtgaaccaccaccatagcctccacgagaaccctg 2668
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 313 ccatcctggaaccgagaaccaccaccatagccgccacgggaaccctg 359 ||||||||||| || ||||||||||||||||| ||||| |||||||| Sbjct: 1222640 ccatcctggaagcgtgaaccaccaccatagcctccacgagaaccctg 1222594
>dbj|AP004885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0575F10 Length = 150462 Score = 61.9 bits (31), Expect = 1e-06 Identities = 43/47 (91%) Strand = Plus / Minus Query: 313 ccatcctggaaccgagaaccaccaccatagccgccacgggaaccctg 359 ||||||||||| || ||||||||||||||||| ||||| |||||||| Sbjct: 53731 ccatcctggaagcgtgaaccaccaccatagcctccacgagaaccctg 53685
>gb|BT018635.1| Zea mays clone EL01N0504B06.d mRNA sequence Length = 1657 Score = 44.1 bits (22), Expect = 0.34 Identities = 55/66 (83%) Strand = Plus / Minus Query: 294 agactggttgcgagaccttccatcctggaaccgagaaccaccaccatagccgccacggga 353 ||||||||||||| |||| ||||||| |||| ||| | ||||||||||| || ||| | Sbjct: 1331 agactggttgcgaccccttgcatcctgaaaccttgaaacgccaccatagcccccgcggta 1272 Query: 354 accctg 359 |||||| Sbjct: 1271 accctg 1266
>emb|AL954241.1| Pan troglodytes chromosome 22 clone RP43-181I17 map 22q22.2-q22.3, complete sequence Length = 212865 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 127 gaagctacaaaaatatagcaa 147 ||||||||||||||||||||| Sbjct: 27917 gaagctacaaaaatatagcaa 27897
>emb|AL954240.1| Pan troglodytes chromosome 22 clone PTB-045O21 map 22q22.2-q22.3, complete sequence Length = 164591 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 127 gaagctacaaaaatatagcaa 147 ||||||||||||||||||||| Sbjct: 111168 gaagctacaaaaatatagcaa 111148
>gb|AC022568.7| Homo sapiens chromosome 8, clone RP11-10H3, complete sequence Length = 138073 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 113 tatgacagataacagaagcta 133 ||||||||||||||||||||| Sbjct: 29065 tatgacagataacagaagcta 29045
>gb|M27659.1|SCMESPAB S.haematobium eggshell protein gene ORFs Length = 1038 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 aaccaccaccatagccgccac 349 ||||||||||||||||||||| Sbjct: 699 aaccaccaccatagccgccac 679
>gb|M27658.1|SCMESPAA S.haematobium eggshell protein gene ORFs Length = 962 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 329 aaccaccaccatagccgccac 349 ||||||||||||||||||||| Sbjct: 623 aaccaccaccatagccgccac 603
>gb|AC139170.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0058P12, complete sequence Length = 173073 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 126 agaagctacaaaaatatagcaaac 149 |||||||||||||| ||||||||| Sbjct: 52479 agaagctacaaaaaaatagcaaac 52456
>gb|BC092206.1| Rattus norvegicus vesicle-associated membrane protein 1, mRNA (cDNA clone MGC:105480 IMAGE:7313343), complete cds Length = 2554 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 tgacagataacagaagctacaaaa 138 ||||||||||||| |||||||||| Sbjct: 1060 tgacagataacagtagctacaaaa 1037
>ref|NM_013090.2| Rattus norvegicus vesicle-associated membrane protein 1 (Vamp1), mRNA Length = 2650 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 tgacagataacagaagctacaaaa 138 ||||||||||||| |||||||||| Sbjct: 1162 tgacagataacagtagctacaaaa 1139
>gb|BC074471.1| Xenopus laevis cDNA clone IMAGE:6950803, partial cds Length = 1750 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 accaccaccatagccgccac 349 |||||||||||||||||||| Sbjct: 371 accaccaccatagccgccac 352
>gb|AC145859.4| Pan troglodytes BAC clone RP43-6G18 from 7, complete sequence Length = 164503 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 aaagtggaaaatagtaactt 27 |||||||||||||||||||| Sbjct: 94763 aaagtggaaaatagtaactt 94782
>gb|AC073272.7| Homo sapiens BAC clone RP11-590O19 from 7, complete sequence Length = 54594 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 8 aaagtggaaaatagtaactt 27 |||||||||||||||||||| Sbjct: 42633 aaagtggaaaatagtaactt 42614
>emb|AJ426040.1|TRU426040 Takifugu rubripes vader gene, cetn gene, fgf2 gene, gfg gene and spaf gene, cosmid 196n09 Length = 29053 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 ataacagaagctacaaaaatatag 144 ||||||| |||||||||||||||| Sbjct: 21269 ataacagtagctacaaaaatatag 21246
>emb|AL928933.7| Mouse DNA sequence from clone RP23-419H6 on chromosome X, complete sequence Length = 171812 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 ccctggccacccctgtcatt 374 |||||||||||||||||||| Sbjct: 166570 ccctggccacccctgtcatt 166551
>gb|AC092954.4| Homo sapiens 3 BAC RP11-368I23 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 166452 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 caggaaaagtggaaaatagt 22 |||||||||||||||||||| Sbjct: 71940 caggaaaagtggaaaatagt 71959
>gb|S82311.1| putative glycine-rich protein {clone CHEM 11} [Zea mays=maize, cv. INRA 258, mercuric chloride-treated, leaves, mRNA Partial, 149 nt] Length = 149 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 accaccaccatagccgccac 349 |||||||||||||||||||| Sbjct: 135 accaccaccatagccgccac 116 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 accaccaccatagccgccac 349 |||||||||||||||||||| Sbjct: 87 accaccaccatagccgccac 68
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 accaccaccatagccgccac 349 |||||||||||||||||||| Sbjct: 19173996 accaccaccatagccgccac 19173977
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 agaagctacaaaaatatagcaaac 149 |||||||||||||| ||||||||| Sbjct: 4942414 agaagctacaaaaaaatagcaaac 4942437
>dbj|AK119673.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-156-G08, full insert sequence Length = 812 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 accaccaccatagccgccac 349 |||||||||||||||||||| Sbjct: 204 accaccaccatagccgccac 185
>dbj|AK099309.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023146P18, full insert sequence Length = 1027 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 accaccaccatagccgccac 349 |||||||||||||||||||| Sbjct: 452 accaccaccatagccgccac 433
>dbj|AK064923.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000N14, full insert sequence Length = 1069 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 accaccaccatagccgccac 349 |||||||||||||||||||| Sbjct: 461 accaccaccatagccgccac 442
>gb|AY103756.1| Zea mays PCO151485 mRNA sequence Length = 637 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 accaccaccatagccgccac 349 |||||||||||||||||||| Sbjct: 610 accaccaccatagccgccac 629
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 126 agaagctacaaaaatatagcaaac 149 |||||||||||||| ||||||||| Sbjct: 4961198 agaagctacaaaaaaatagcaaac 4961221
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 accaccaccatagccgccac 349 |||||||||||||||||||| Sbjct: 19100223 accaccaccatagccgccac 19100204
>emb|AL731752.4|CNS08C81 Oryza sativa chromosome 12, . BAC OJ1536_D01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127026 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 330 accaccaccatagccgccac 349 |||||||||||||||||||| Sbjct: 51983 accaccaccatagccgccac 52002
>emb|AL731751.4|CNS08C80 Oryza sativa chromosome 12, . BAC OJ1510_A06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 136155 Score = 40.1 bits (20), Expect = 5.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 330 accaccaccatagccgccac 349 |||||||||||||||||||| Sbjct: 7326 accaccaccatagccgccac 7307
>gb|M24104.1|RATVAMPIR Rat vesicle associated membrane protein (VAMP-1) mRNA, complete cds Length = 1482 Score = 40.1 bits (20), Expect = 5.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 115 tgacagataacagaagctacaaaa 138 ||||||||||||| |||||||||| Sbjct: 1064 tgacagataacagtagctacaaaa 1041 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,040,957 Number of Sequences: 3902068 Number of extensions: 3040957 Number of successful extensions: 86126 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85959 Number of HSP's gapped (non-prelim): 161 length of query: 395 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 373 effective length of database: 17,147,199,772 effective search space: 6395905514956 effective search space used: 6395905514956 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)