ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl30g06 |
|---|---|
| Clone Library Name | barley_pub |
>CLD23_MOUSE (Q9D7D7) Claudin-23| Length = 296 Score = 30.4 bits (67), Expect = 1.8 Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 6/82 (7%) Frame = +1 Query: 133 YPL*LPLPGCCSRV--ALELALAIAASGIVPCRR----HPCGLKRGHISHVHVKRQHPVL 294 Y L L G C + LAL+ A CRR P G +R IS V+V P L Sbjct: 158 YSLVLGYLGSCLLLLGGFSLALSFAPWCEERCRRCRKAPPAGPRRSSISTVYVDWPEPAL 217 Query: 295 DVEVLQYSDHLLEHEFPPHKPH 360 + YSD +H PP H Sbjct: 218 TPAIKYYSDG--QHRPPPTAEH 237
>SRA25_CAEEL (O17847) Serpentine receptor class alpha-25 (Protein sra-25)| Length = 335 Score = 29.6 bits (65), Expect = 3.0 Identities = 12/20 (60%), Positives = 16/20 (80%) Frame = +2 Query: 35 AATICIAYHQVYRSFIYTTE 94 AAT+ I HQVYRSF+Y ++ Sbjct: 75 AATLEIRIHQVYRSFVYASD 94
>ADRB1_RAT (P18090) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) Length = 466 Score = 29.6 bits (65), Expect = 3.0 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -3 Query: 265 RAKCAPSSVHKDADDMELCLKRQSPGPAPGPP 170 RA C + H D CL R P P+PG P Sbjct: 385 RAACRRRAAHGDRPRASGCLARAGPPPSPGAP 416
>ADRB1_MOUSE (P34971) Beta-1 adrenergic receptor (Beta-1 adrenoceptor) (Beta-1| adrenoreceptor) Length = 466 Score = 29.6 bits (65), Expect = 3.0 Identities = 13/32 (40%), Positives = 15/32 (46%) Frame = -3 Query: 265 RAKCAPSSVHKDADDMELCLKRQSPGPAPGPP 170 RA C + H D CL R P P+PG P Sbjct: 385 RAACRRRAAHGDRPRASGCLARAGPPPSPGAP 416
>TENS_CHICK (Q04205) Tensin| Length = 1744 Score = 29.3 bits (64), Expect = 3.9 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 10/96 (10%) Frame = -3 Query: 394 APAHTQLPGHGHEVCEEGTRAPRDDQSTEG-PRHRVPDVAA*RERA---------KCAPS 245 APA +QLP G E E+ +R+ + + EG HRV V + RE++ + PS Sbjct: 948 APAQSQLPHKGLESYEDLSRSGEEPLNLEGLVAHRVAGVQS-REKSPEESTVPARRRTPS 1006 Query: 244 SVHKDADDMELCLKRQSPGPAPGPPCYNSLVAATIA 137 H + E PG P + V +TIA Sbjct: 1007 DSHYEKSSPE-------PGSPRSPTVLSPEVVSTIA 1035
>PQQB_METCA (Q608P3) Coenzyme PQQ synthesis protein B (Pyrroloquinoline quinone| biosynthesis protein B) Length = 304 Score = 28.9 bits (63), Expect = 5.1 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +1 Query: 298 VEVLQYSDHLLEHEFPPHKPHAH 366 +E L++S H L+ + PP+ PH H Sbjct: 152 IEGLKFSTHSLKSKAPPYSPHRH 174
>FREM3_HUMAN (P0C091) FRAS1-related extracellular matrix protein 3 precursor| Length = 2135 Score = 28.9 bits (63), Expect = 5.1 Identities = 17/40 (42%), Positives = 22/40 (55%) Frame = +3 Query: 225 SASLWTEEGAHFARSRQAATSGTRCRGPSVL*SSLGARVP 344 ++SL TE + A GTR GPSVL ++ G RVP Sbjct: 33 ASSLGTEPDPALYLPARGALDGTRPDGPSVLIANPGLRVP 72
>RADC_PSEPK (Q88C97) DNA repair protein radC homolog| Length = 226 Score = 28.9 bits (63), Expect = 5.1 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 4/58 (6%) Frame = +1 Query: 169 RVALELALAIAASGIVPCRRHPCGLKRGHISHVH----VKRQHPVLDVEVLQYSDHLL 330 R + AL A+ ++ C HP G+ VH +KR ++DV VL DH++ Sbjct: 155 REVVRRALVHNAAALILCHNHPSGISEPSQDDVHLTLSLKRGLALIDVRVL---DHII 209
>SYA_METAC (Q8TU79) Alanyl-tRNA synthetase (EC 6.1.1.7) (Alanine--tRNA ligase)| (AlaRS) Length = 925 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/31 (41%), Positives = 23/31 (74%), Gaps = 1/31 (3%) Frame = -1 Query: 339 LVLQEMIRVLKDLDIEYRMLPL-DVNVRNVP 250 LVL+ +R++KDLDI + + D+++RN+P Sbjct: 366 LVLRRTLRMMKDLDIRTPLSEIVDMHIRNMP 396
>NAGZ_HAEIN (P44955) Beta-hexosaminidase (EC 3.2.1.52)| (N-acetyl-beta-glucosaminidase) (Beta-N-acetylhexosaminidase) Length = 351 Score = 28.5 bits (62), Expect = 6.7 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%) Frame = -3 Query: 406 GIH---MAPAHTQLPGHGHEVCEEGTRAPRDDQSTE 308 G+H MA PGHGH + + P DD++ E Sbjct: 152 GMHQAGMASTGKHFPGHGHVLADSHLETPYDDRTKE 187
>ENV_BLVB5 (P25507) Env polyprotein precursor [Contains: Coat glycoprotein| GP51; Coat protein GP30] Length = 515 Score = 24.6 bits (52), Expect(2) = 8.5 Identities = 9/19 (47%), Positives = 9/19 (47%) Frame = +2 Query: 155 QAVVAGWPWSWPWRLPLQA 211 Q V W W W W L L A Sbjct: 412 QRVSTDWQWPWNWDLGLTA 430 Score = 21.9 bits (45), Expect(2) = 8.5 Identities = 10/37 (27%), Positives = 18/37 (48%) Frame = +1 Query: 298 VEVLQYSDHLLEHEFPPHKPHAHVLEVECVPEPYGYL 408 +++L+ + H E FPP + + PE Y +L Sbjct: 465 LKLLRQAPHFPEISFPPKPDSDYQALLPSAPEIYSHL 501
>ENV_BLV (P51519) Env polyprotein precursor [Contains: Coat glycoprotein| GP51; Coat protein GP30] Length = 515 Score = 24.6 bits (52), Expect(2) = 8.5 Identities = 9/19 (47%), Positives = 9/19 (47%) Frame = +2 Query: 155 QAVVAGWPWSWPWRLPLQA 211 Q V W W W W L L A Sbjct: 412 QRVSTDWQWPWNWDLGLTA 430 Score = 21.9 bits (45), Expect(2) = 8.5 Identities = 10/37 (27%), Positives = 18/37 (48%) Frame = +1 Query: 298 VEVLQYSDHLLEHEFPPHKPHAHVLEVECVPEPYGYL 408 +++L+ + H E FPP + + PE Y +L Sbjct: 465 LKLLRQAPHFPEISFPPKPDSDYQALLPSAPEIYSHL 501
>TNAP3_MACFA (Q4R8W3) Tumor necrosis factor, alpha-induced protein 3 (EC| 3.-.-.-) Length = 790 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 2/53 (3%) Frame = -3 Query: 325 DDQSTEGPRHRVPDVAA*RERAKCAPSSVHK--DADDMELCLKRQSPGPAPGP 173 ++Q R VP R KCA +S ELC++ Q P P GP Sbjct: 693 EEQLRSSQRRDVPRTTQSTSRPKCARASCKNILACRSEELCMECQHPNPRMGP 745
>RP8L4_ARATH (Q9FJK8) Probable disease resistance RPP8-like protein 4| Length = 908 Score = 28.1 bits (61), Expect = 8.8 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = +1 Query: 331 EHEFPPHKPHAHVLEVECVPEPYGYLE 411 +H+FPPH H H++ +P LE Sbjct: 765 QHQFPPHLAHIHLVHCVMKEDPMPILE 791
>WEE1_HUMAN (P30291) Wee1-like protein kinase (EC 2.7.10.2) (WEE1hu)| Length = 646 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/61 (31%), Positives = 28/61 (45%) Frame = -3 Query: 352 CEEGTRAPRDDQSTEGPRHRVPDVAA*RERAKCAPSSVHKDADDMELCLKRQSPGPAPGP 173 CEE +++ EG H + +A +E P + E +R+SPGPAPG Sbjct: 33 CEE----EEEEEEEEGSGHSTGEDSAFQEPDSPLPPARSPTEPGPE---RRRSPGPAPGS 85 Query: 172 P 170 P Sbjct: 86 P 86
>MTR1L_HUMAN (Q13585) Melatonin-related receptor (G protein-coupled receptor 50)| (H9) Length = 613 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = -3 Query: 250 PSSVHKDADDMELCLKRQSPGPAPGPPCYNSLVAATIAD 134 P+ H +DD +L SP P P + L + TIAD Sbjct: 544 PAIAHPVSDDSDLPESASSPAAGPTKPAASQLESDTIAD 582 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,173,621 Number of Sequences: 219361 Number of extensions: 1400584 Number of successful extensions: 4585 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4343 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4562 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2278320915 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
