Clone Name | rbastl30g06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 222 bits (112), Expect = 7e-55 Identities = 190/216 (87%) Strand = Plus / Minus Query: 205 tcaggcatagttccatgtcgtcggcatccttgtggactgaagagggggcacatttcgcac 264 ||||| ||||||||||||||| |||||||| |||||||| | ||||||| | |||||||| Sbjct: 27140589 tcaggaatagttccatgtcgttggcatcctcgtggactggatagggggcgcgtttcgcac 27140530 Query: 265 gttcacgtcaagcggcaacatccggtactcgatgtcgaggtccttcagtactctgatcat 324 ||||||||| || |||| ||||| ||| || |||||||||||||| || ||| ||||||| Sbjct: 27140529 gttcacgtcgagtggcagcatcctgtattctatgtcgaggtccttgagaactttgatcat 27140470 Query: 325 ctcttggagcacgagttccctcctcacaaacctcatgcccatgtcctggaagttgagtgt 384 |||||||||||| || |||||||| || |||||||| ||||||||||| |||||||||| Sbjct: 27140469 ctcttggagcaccagctccctccttacgaacctcatccccatgtcctgccagttgagtgt 27140410 Query: 385 gtgccggagccatatggataccttgagcttgttggt 420 |||||||||||||||||| || || ||||||||||| Sbjct: 27140409 gtgccggagccatatggacactttcagcttgttggt 27140374
>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1725_H08 Length = 155431 Score = 222 bits (112), Expect = 7e-55 Identities = 190/216 (87%) Strand = Plus / Minus Query: 205 tcaggcatagttccatgtcgtcggcatccttgtggactgaagagggggcacatttcgcac 264 ||||| ||||||||||||||| |||||||| |||||||| | ||||||| | |||||||| Sbjct: 37038 tcaggaatagttccatgtcgttggcatcctcgtggactggatagggggcgcgtttcgcac 36979 Query: 265 gttcacgtcaagcggcaacatccggtactcgatgtcgaggtccttcagtactctgatcat 324 ||||||||| || |||| ||||| ||| || |||||||||||||| || ||| ||||||| Sbjct: 36978 gttcacgtcgagtggcagcatcctgtattctatgtcgaggtccttgagaactttgatcat 36919 Query: 325 ctcttggagcacgagttccctcctcacaaacctcatgcccatgtcctggaagttgagtgt 384 |||||||||||| || |||||||| || |||||||| ||||||||||| |||||||||| Sbjct: 36918 ctcttggagcaccagctccctccttacgaacctcatccccatgtcctgccagttgagtgt 36859 Query: 385 gtgccggagccatatggataccttgagcttgttggt 420 |||||||||||||||||| || || ||||||||||| Sbjct: 36858 gtgccggagccatatggacactttcagcttgttggt 36823
>dbj|AK101871.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070F06, full insert sequence Length = 3349 Score = 222 bits (112), Expect = 7e-55 Identities = 190/216 (87%) Strand = Plus / Minus Query: 205 tcaggcatagttccatgtcgtcggcatccttgtggactgaagagggggcacatttcgcac 264 ||||| ||||||||||||||| |||||||| |||||||| | ||||||| | |||||||| Sbjct: 3018 tcaggaatagttccatgtcgttggcatcctcgtggactggatagggggcgcgtttcgcac 2959 Query: 265 gttcacgtcaagcggcaacatccggtactcgatgtcgaggtccttcagtactctgatcat 324 ||||||||| || |||| ||||| ||| || |||||||||||||| || ||| ||||||| Sbjct: 2958 gttcacgtcgagtggcagcatcctgtattctatgtcgaggtccttgagaactttgatcat 2899 Query: 325 ctcttggagcacgagttccctcctcacaaacctcatgcccatgtcctggaagttgagtgt 384 |||||||||||| || |||||||| || |||||||| ||||||||||| |||||||||| Sbjct: 2898 ctcttggagcaccagctccctccttacgaacctcatccccatgtcctgccagttgagtgt 2839 Query: 385 gtgccggagccatatggataccttgagcttgttggt 420 |||||||||||||||||| || || ||||||||||| Sbjct: 2838 gtgccggagccatatggacactttcagcttgttggt 2803
>ref|XM_473489.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2805 Score = 87.7 bits (44), Expect = 3e-14 Identities = 116/140 (82%) Strand = Plus / Minus Query: 278 ggcaacatccggtactcgatgtcgaggtccttcagtactctgatcatctcttggagcacg 337 |||||||||||||| |||||||| || || |||| | ||||||| |||||||||| Sbjct: 2732 ggcaacatccggtattcgatgtctagatctttcaagatcttgatcatttcttggagcaat 2673 Query: 338 agttccctcctcacaaacctcatgcccatgtcctggaagttgagtgtgtgccggagccat 397 || ||||||||| | || ||||| |||||||| |||||||||| ||||| ||| |||| Sbjct: 2672 agctccctcctctcgaatctcatccccatgtcttggaagttgatcgtgtgacggcaccat 2613 Query: 398 atggataccttgagcttgtt 417 ||||||||||| |||||||| Sbjct: 2612 atggatacctttagcttgtt 2593
>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11, complete sequence Length = 147806 Score = 87.7 bits (44), Expect = 3e-14 Identities = 116/140 (82%) Strand = Plus / Minus Query: 278 ggcaacatccggtactcgatgtcgaggtccttcagtactctgatcatctcttggagcacg 337 |||||||||||||| |||||||| || || |||| | ||||||| |||||||||| Sbjct: 75050 ggcaacatccggtattcgatgtctagatctttcaagatcttgatcatttcttggagcaat 74991 Query: 338 agttccctcctcacaaacctcatgcccatgtcctggaagttgagtgtgtgccggagccat 397 || ||||||||| | || ||||| |||||||| |||||||||| ||||| ||| |||| Sbjct: 74990 agctccctcctctcgaatctcatccccatgtcttggaagttgatcgtgtgacggcaccat 74931 Query: 398 atggataccttgagcttgtt 417 ||||||||||| |||||||| Sbjct: 74930 atggatacctttagcttgtt 74911
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 87.7 bits (44), Expect = 3e-14 Identities = 116/140 (82%) Strand = Plus / Minus Query: 278 ggcaacatccggtactcgatgtcgaggtccttcagtactctgatcatctcttggagcacg 337 |||||||||||||| |||||||| || || |||| | ||||||| |||||||||| Sbjct: 28067824 ggcaacatccggtattcgatgtctagatctttcaagatcttgatcatttcttggagcaat 28067765 Query: 338 agttccctcctcacaaacctcatgcccatgtcctggaagttgagtgtgtgccggagccat 397 || ||||||||| | || ||||| |||||||| |||||||||| ||||| ||| |||| Sbjct: 28067764 agctccctcctctcgaatctcatccccatgtcttggaagttgatcgtgtgacggcaccat 28067705 Query: 398 atggataccttgagcttgtt 417 ||||||||||| |||||||| Sbjct: 28067704 atggatacctttagcttgtt 28067685
>gb|BC074901.2| Homo sapiens zinc finger protein 514, mRNA (cDNA clone MGC:103869 IMAGE:30915251), complete cds Length = 1270 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 acaaccgcaggctgctttcaac 27 |||||||||||||||||||||| Sbjct: 392 acaaccgcaggctgctttcaac 371
>gb|BC068498.1| Homo sapiens zinc finger protein 514, mRNA (cDNA clone IMAGE:30344612), with apparent retained intron Length = 3493 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 acaaccgcaggctgctttcaac 27 |||||||||||||||||||||| Sbjct: 1006 acaaccgcaggctgctttcaac 985
>ref|NM_032788.1| Homo sapiens zinc finger protein 514 (ZNF514), mRNA Length = 3204 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 acaaccgcaggctgctttcaac 27 |||||||||||||||||||||| Sbjct: 731 acaaccgcaggctgctttcaac 710
>gb|BC074900.2| Homo sapiens zinc finger protein 514, mRNA (cDNA clone MGC:104036 IMAGE:30915480), complete cds Length = 1270 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 acaaccgcaggctgctttcaac 27 |||||||||||||||||||||| Sbjct: 392 acaaccgcaggctgctttcaac 371
>emb|AL832263.1|HSM803570 Homo sapiens mRNA; cDNA DKFZp667J1717 (from clone DKFZp667J1717) Length = 5603 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 acaaccgcaggctgctttcaac 27 |||||||||||||||||||||| Sbjct: 2794 acaaccgcaggctgctttcaac 2773
>dbj|AK027363.1| Homo sapiens cDNA FLJ14457 fis, clone HEMBB1002217, weakly similar to ZINC FINGER PROTEIN 91 Length = 3204 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 acaaccgcaggctgctttcaac 27 |||||||||||||||||||||| Sbjct: 731 acaaccgcaggctgctttcaac 710
>gb|AC092835.4| Homo sapiens BAC clone RP11-11P22 from 2, complete sequence Length = 158404 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Plus Query: 6 acaaccgcaggctgctttcaac 27 |||||||||||||||||||||| Sbjct: 68633 acaaccgcaggctgctttcaac 68654
>emb|CR956638.22| Pig DNA sequence from clone CH242-204B8 on chromosome 17, complete sequence Length = 94293 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 219 atgtcgtcggcatccttgtggactga 244 ||||||||||||||||||||| |||| Sbjct: 40323 atgtcgtcggcatccttgtggcctga 40348
>gb|BC110525.1| Homo sapiens zinc finger protein 514, mRNA (cDNA clone MGC:126230 IMAGE:40034155), complete cds Length = 2375 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 acaaccgcaggctgctttcaac 27 |||||||||||||||||||||| Sbjct: 550 acaaccgcaggctgctttcaac 529
>gb|BC110524.1| Homo sapiens zinc finger protein 514, mRNA (cDNA clone MGC:126229 IMAGE:40034154), complete cds Length = 2755 Score = 44.1 bits (22), Expect = 0.36 Identities = 22/22 (100%) Strand = Plus / Minus Query: 6 acaaccgcaggctgctttcaac 27 |||||||||||||||||||||| Sbjct: 930 acaaccgcaggctgctttcaac 909
>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome Length = 3928089 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 221 gtcgtcggcatccttgtggac 241 ||||||||||||||||||||| Sbjct: 2998333 gtcgtcggcatccttgtggac 2998353
>emb|AL133232.15| Human DNA sequence from clone RP5-897D18 on chromosome 20 Contains part of a gene for a putative novel protein, EST, STSs and GSSs, complete sequence Length = 95097 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 13 caggctgctttcaacatttcc 33 ||||||||||||||||||||| Sbjct: 83301 caggctgctttcaacatttcc 83321
>gb|AC019230.5|AC019230 Homo sapiens BAC clone RP11-571O22 from X, complete sequence Length = 179483 Score = 42.1 bits (21), Expect = 1.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 166 agcagggtggccctggagctggccc 190 ||||||||||||||||| ||||||| Sbjct: 48960 agcagggtggccctggacctggccc 48936
>gb|AC092536.3| Homo sapiens BAC clone RP11-32N3 from 7, complete sequence Length = 132755 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 tggctatccgctatagttgc 148 |||||||||||||||||||| Sbjct: 35690 tggctatccgctatagttgc 35671
>gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's Hospital Oakland Research Institute) complete sequence Length = 216194 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 174 ggccctggagctggccctgg 193 |||||||||||||||||||| Sbjct: 17250 ggccctggagctggccctgg 17231
>gb|DQ131903.1| Homo sapiens interleukin 1 receptor-like 2 (IL1RL2) gene, complete cds Length = 56373 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gttccctcctcacaaacctc 358 |||||||||||||||||||| Sbjct: 3875 gttccctcctcacaaacctc 3856
>gb|AC148836.6| Pan troglodytes BAC clone CH251-2C8 from chromosome 7, complete sequence Length = 219717 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 tggctatccgctatagttgc 148 |||||||||||||||||||| Sbjct: 163913 tggctatccgctatagttgc 163894
>emb|BX571969.5| Zebrafish DNA sequence from clone DKEY-93P1 in linkage group 11, complete sequence Length = 160905 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tatatactacagaacacact 100 |||||||||||||||||||| Sbjct: 37444 tatatactacagaacacact 37425
>dbj|AP006185.1| Sus scrofa CC chemokine receptor genes (CCR2, CCR5, CCRL2, LTF, TMEM7, LRRC2), complete cds, clone: 0475A03 Length = 165558 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 ccgcttcaggcatagttcca 219 |||||||||||||||||||| Sbjct: 76059 ccgcttcaggcatagttcca 76078
>ref|NM_017021.1| Rattus norvegicus interleukin 9 receptor (Il9r), mRNA Length = 3692 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggccctggagctggccctgg 193 |||||||||||||||||||| Sbjct: 1532 ggccctggagctggccctgg 1551
>gb|AC007271.4| Homo sapiens BAC clone RP11-4B12 from 2, complete sequence Length = 179954 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gttccctcctcacaaacctc 358 |||||||||||||||||||| Sbjct: 141375 gttccctcctcacaaacctc 141356
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 172 gtggccctggagctggccct 191 |||||||||||||||||||| Sbjct: 1388356 gtggccctggagctggccct 1388337
>emb|AL713850.6| Zebrafish DNA sequence from clone BUSM1-136D19 in linkage group 11, complete sequence Length = 99681 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 81 tatatactacagaacacact 100 |||||||||||||||||||| Sbjct: 15995 tatatactacagaacacact 15976
>gb|L36459.1|RATGFI2A Rattus norvegicus gfi-2 mRNA, complete cds Length = 3692 Score = 40.1 bits (20), Expect = 5.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 ggccctggagctggccctgg 193 |||||||||||||||||||| Sbjct: 1532 ggccctggagctggccctgg 1551 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,109,127 Number of Sequences: 3902068 Number of extensions: 3109127 Number of successful extensions: 61817 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 30 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 61665 Number of HSP's gapped (non-prelim): 149 length of query: 423 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 401 effective length of database: 17,147,199,772 effective search space: 6876027108572 effective search space used: 6876027108572 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)