ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30g06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 222 7e-55
2dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic D... 222 7e-55
3dbj|AK101871.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 7e-55
4ref|XM_473489.1| Oryza sativa (japonica cultivar-group), predic... 88 3e-14
5emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4,... 88 3e-14
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 88 3e-14
7gb|BC074901.2| Homo sapiens zinc finger protein 514, mRNA (cDNA ... 44 0.36
8gb|BC068498.1| Homo sapiens zinc finger protein 514, mRNA (cDNA ... 44 0.36
9ref|NM_032788.1| Homo sapiens zinc finger protein 514 (ZNF514), ... 44 0.36
10gb|BC074900.2| Homo sapiens zinc finger protein 514, mRNA (cDNA ... 44 0.36
11emb|AL832263.1|HSM803570 Homo sapiens mRNA; cDNA DKFZp667J1717 (... 44 0.36
12dbj|AK027363.1| Homo sapiens cDNA FLJ14457 fis, clone HEMBB10022... 44 0.36
13gb|AC092835.4| Homo sapiens BAC clone RP11-11P22 from 2, complet... 44 0.36
14emb|CR956638.22| Pig DNA sequence from clone CH242-204B8 on chro... 44 0.36
15gb|BC110525.1| Homo sapiens zinc finger protein 514, mRNA (cDNA ... 44 0.36
16gb|BC110524.1| Homo sapiens zinc finger protein 514, mRNA (cDNA ... 44 0.36
17gb|CP000352.1| Ralstonia metallidurans CH34, complete genome 42 1.4
18emb|AL133232.15| Human DNA sequence from clone RP5-897D18 on chr... 42 1.4
19gb|AC019230.5|AC019230 Homo sapiens BAC clone RP11-571O22 from X... 42 1.4
20gb|AC092536.3| Homo sapiens BAC clone RP11-32N3 from 7, complete... 40 5.7
21gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's H... 40 5.7
22gb|DQ131903.1| Homo sapiens interleukin 1 receptor-like 2 (IL1RL... 40 5.7
23gb|AC148836.6| Pan troglodytes BAC clone CH251-2C8 from chromoso... 40 5.7
24emb|BX571969.5| Zebrafish DNA sequence from clone DKEY-93P1 in l... 40 5.7
25dbj|AP006185.1| Sus scrofa CC chemokine receptor genes (CCR2, CC... 40 5.7
26ref|NM_017021.1| Rattus norvegicus interleukin 9 receptor (Il9r)... 40 5.7
27gb|AC007271.4| Homo sapiens BAC clone RP11-4B12 from 2, complete... 40 5.7
28emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,comp... 40 5.7
29emb|AL713850.6| Zebrafish DNA sequence from clone BUSM1-136D19 i... 40 5.7
30gb|L36459.1|RATGFI2A Rattus norvegicus gfi-2 mRNA, complete cds 40 5.7

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  222 bits (112), Expect = 7e-55
 Identities = 190/216 (87%)
 Strand = Plus / Minus

                                                                            
Query: 205      tcaggcatagttccatgtcgtcggcatccttgtggactgaagagggggcacatttcgcac 264
                ||||| ||||||||||||||| |||||||| |||||||| | ||||||| | ||||||||
Sbjct: 27140589 tcaggaatagttccatgtcgttggcatcctcgtggactggatagggggcgcgtttcgcac 27140530

                                                                            
Query: 265      gttcacgtcaagcggcaacatccggtactcgatgtcgaggtccttcagtactctgatcat 324
                ||||||||| || |||| ||||| ||| || |||||||||||||| || ||| |||||||
Sbjct: 27140529 gttcacgtcgagtggcagcatcctgtattctatgtcgaggtccttgagaactttgatcat 27140470

                                                                            
Query: 325      ctcttggagcacgagttccctcctcacaaacctcatgcccatgtcctggaagttgagtgt 384
                |||||||||||| || |||||||| || |||||||| |||||||||||  ||||||||||
Sbjct: 27140469 ctcttggagcaccagctccctccttacgaacctcatccccatgtcctgccagttgagtgt 27140410

                                                    
Query: 385      gtgccggagccatatggataccttgagcttgttggt 420
                |||||||||||||||||| || || |||||||||||
Sbjct: 27140409 gtgccggagccatatggacactttcagcttgttggt 27140374



to top

>dbj|AP004858.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1725_H08
          Length = 155431

 Score =  222 bits (112), Expect = 7e-55
 Identities = 190/216 (87%)
 Strand = Plus / Minus

                                                                         
Query: 205   tcaggcatagttccatgtcgtcggcatccttgtggactgaagagggggcacatttcgcac 264
             ||||| ||||||||||||||| |||||||| |||||||| | ||||||| | ||||||||
Sbjct: 37038 tcaggaatagttccatgtcgttggcatcctcgtggactggatagggggcgcgtttcgcac 36979

                                                                         
Query: 265   gttcacgtcaagcggcaacatccggtactcgatgtcgaggtccttcagtactctgatcat 324
             ||||||||| || |||| ||||| ||| || |||||||||||||| || ||| |||||||
Sbjct: 36978 gttcacgtcgagtggcagcatcctgtattctatgtcgaggtccttgagaactttgatcat 36919

                                                                         
Query: 325   ctcttggagcacgagttccctcctcacaaacctcatgcccatgtcctggaagttgagtgt 384
             |||||||||||| || |||||||| || |||||||| |||||||||||  ||||||||||
Sbjct: 36918 ctcttggagcaccagctccctccttacgaacctcatccccatgtcctgccagttgagtgt 36859

                                                 
Query: 385   gtgccggagccatatggataccttgagcttgttggt 420
             |||||||||||||||||| || || |||||||||||
Sbjct: 36858 gtgccggagccatatggacactttcagcttgttggt 36823



to top

>dbj|AK101871.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070F06, full
            insert sequence
          Length = 3349

 Score =  222 bits (112), Expect = 7e-55
 Identities = 190/216 (87%)
 Strand = Plus / Minus

                                                                        
Query: 205  tcaggcatagttccatgtcgtcggcatccttgtggactgaagagggggcacatttcgcac 264
            ||||| ||||||||||||||| |||||||| |||||||| | ||||||| | ||||||||
Sbjct: 3018 tcaggaatagttccatgtcgttggcatcctcgtggactggatagggggcgcgtttcgcac 2959

                                                                        
Query: 265  gttcacgtcaagcggcaacatccggtactcgatgtcgaggtccttcagtactctgatcat 324
            ||||||||| || |||| ||||| ||| || |||||||||||||| || ||| |||||||
Sbjct: 2958 gttcacgtcgagtggcagcatcctgtattctatgtcgaggtccttgagaactttgatcat 2899

                                                                        
Query: 325  ctcttggagcacgagttccctcctcacaaacctcatgcccatgtcctggaagttgagtgt 384
            |||||||||||| || |||||||| || |||||||| |||||||||||  ||||||||||
Sbjct: 2898 ctcttggagcaccagctccctccttacgaacctcatccccatgtcctgccagttgagtgt 2839

                                                
Query: 385  gtgccggagccatatggataccttgagcttgttggt 420
            |||||||||||||||||| || || |||||||||||
Sbjct: 2838 gtgccggagccatatggacactttcagcttgttggt 2803



to top

>ref|XM_473489.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2805

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                        
Query: 278  ggcaacatccggtactcgatgtcgaggtccttcagtactctgatcatctcttggagcacg 337
            |||||||||||||| |||||||| || || ||||  |   ||||||| ||||||||||  
Sbjct: 2732 ggcaacatccggtattcgatgtctagatctttcaagatcttgatcatttcttggagcaat 2673

                                                                        
Query: 338  agttccctcctcacaaacctcatgcccatgtcctggaagttgagtgtgtgccggagccat 397
            || ||||||||| | || ||||| |||||||| ||||||||||  ||||| |||  ||||
Sbjct: 2672 agctccctcctctcgaatctcatccccatgtcttggaagttgatcgtgtgacggcaccat 2613

                                
Query: 398  atggataccttgagcttgtt 417
            ||||||||||| ||||||||
Sbjct: 2612 atggatacctttagcttgtt 2593



to top

>emb|AL606687.3|OSJN00087 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K11,
             complete sequence
          Length = 147806

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                         
Query: 278   ggcaacatccggtactcgatgtcgaggtccttcagtactctgatcatctcttggagcacg 337
             |||||||||||||| |||||||| || || ||||  |   ||||||| ||||||||||  
Sbjct: 75050 ggcaacatccggtattcgatgtctagatctttcaagatcttgatcatttcttggagcaat 74991

                                                                         
Query: 338   agttccctcctcacaaacctcatgcccatgtcctggaagttgagtgtgtgccggagccat 397
             || ||||||||| | || ||||| |||||||| ||||||||||  ||||| |||  ||||
Sbjct: 74990 agctccctcctctcgaatctcatccccatgtcttggaagttgatcgtgtgacggcaccat 74931

                                 
Query: 398   atggataccttgagcttgtt 417
             ||||||||||| ||||||||
Sbjct: 74930 atggatacctttagcttgtt 74911



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 116/140 (82%)
 Strand = Plus / Minus

                                                                            
Query: 278      ggcaacatccggtactcgatgtcgaggtccttcagtactctgatcatctcttggagcacg 337
                |||||||||||||| |||||||| || || ||||  |   ||||||| ||||||||||  
Sbjct: 28067824 ggcaacatccggtattcgatgtctagatctttcaagatcttgatcatttcttggagcaat 28067765

                                                                            
Query: 338      agttccctcctcacaaacctcatgcccatgtcctggaagttgagtgtgtgccggagccat 397
                || ||||||||| | || ||||| |||||||| ||||||||||  ||||| |||  ||||
Sbjct: 28067764 agctccctcctctcgaatctcatccccatgtcttggaagttgatcgtgtgacggcaccat 28067705

                                    
Query: 398      atggataccttgagcttgtt 417
                ||||||||||| ||||||||
Sbjct: 28067704 atggatacctttagcttgtt 28067685



to top

>gb|BC074901.2| Homo sapiens zinc finger protein 514, mRNA (cDNA clone MGC:103869
           IMAGE:30915251), complete cds
          Length = 1270

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 6   acaaccgcaggctgctttcaac 27
           ||||||||||||||||||||||
Sbjct: 392 acaaccgcaggctgctttcaac 371



to top

>gb|BC068498.1| Homo sapiens zinc finger protein 514, mRNA (cDNA clone
            IMAGE:30344612), with apparent retained intron
          Length = 3493

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 6    acaaccgcaggctgctttcaac 27
            ||||||||||||||||||||||
Sbjct: 1006 acaaccgcaggctgctttcaac 985



to top

>ref|NM_032788.1| Homo sapiens zinc finger protein 514 (ZNF514), mRNA
          Length = 3204

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 6   acaaccgcaggctgctttcaac 27
           ||||||||||||||||||||||
Sbjct: 731 acaaccgcaggctgctttcaac 710



to top

>gb|BC074900.2| Homo sapiens zinc finger protein 514, mRNA (cDNA clone MGC:104036
           IMAGE:30915480), complete cds
          Length = 1270

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 6   acaaccgcaggctgctttcaac 27
           ||||||||||||||||||||||
Sbjct: 392 acaaccgcaggctgctttcaac 371



to top

>emb|AL832263.1|HSM803570 Homo sapiens mRNA; cDNA DKFZp667J1717 (from clone DKFZp667J1717)
          Length = 5603

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 6    acaaccgcaggctgctttcaac 27
            ||||||||||||||||||||||
Sbjct: 2794 acaaccgcaggctgctttcaac 2773



to top

>dbj|AK027363.1| Homo sapiens cDNA FLJ14457 fis, clone HEMBB1002217, weakly similar
           to ZINC FINGER PROTEIN 91
          Length = 3204

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 6   acaaccgcaggctgctttcaac 27
           ||||||||||||||||||||||
Sbjct: 731 acaaccgcaggctgctttcaac 710



to top

>gb|AC092835.4| Homo sapiens BAC clone RP11-11P22 from 2, complete sequence
          Length = 158404

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 6     acaaccgcaggctgctttcaac 27
             ||||||||||||||||||||||
Sbjct: 68633 acaaccgcaggctgctttcaac 68654



to top

>emb|CR956638.22| Pig DNA sequence from clone CH242-204B8 on chromosome 17, complete
             sequence
          Length = 94293

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 219   atgtcgtcggcatccttgtggactga 244
             ||||||||||||||||||||| ||||
Sbjct: 40323 atgtcgtcggcatccttgtggcctga 40348



to top

>gb|BC110525.1| Homo sapiens zinc finger protein 514, mRNA (cDNA clone MGC:126230
           IMAGE:40034155), complete cds
          Length = 2375

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 6   acaaccgcaggctgctttcaac 27
           ||||||||||||||||||||||
Sbjct: 550 acaaccgcaggctgctttcaac 529



to top

>gb|BC110524.1| Homo sapiens zinc finger protein 514, mRNA (cDNA clone MGC:126229
           IMAGE:40034154), complete cds
          Length = 2755

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 6   acaaccgcaggctgctttcaac 27
           ||||||||||||||||||||||
Sbjct: 930 acaaccgcaggctgctttcaac 909



to top

>gb|CP000352.1| Ralstonia metallidurans CH34, complete genome
          Length = 3928089

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 221     gtcgtcggcatccttgtggac 241
               |||||||||||||||||||||
Sbjct: 2998333 gtcgtcggcatccttgtggac 2998353



to top

>emb|AL133232.15| Human DNA sequence from clone RP5-897D18 on chromosome 20 Contains part
             of a gene for a  putative novel protein, EST, STSs and
             GSSs, complete sequence
          Length = 95097

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 13    caggctgctttcaacatttcc 33
             |||||||||||||||||||||
Sbjct: 83301 caggctgctttcaacatttcc 83321



to top

>gb|AC019230.5|AC019230 Homo sapiens BAC clone RP11-571O22 from X, complete sequence
          Length = 179483

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 166   agcagggtggccctggagctggccc 190
             ||||||||||||||||| |||||||
Sbjct: 48960 agcagggtggccctggacctggccc 48936



to top

>gb|AC092536.3| Homo sapiens BAC clone RP11-32N3 from 7, complete sequence
          Length = 132755

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   tggctatccgctatagttgc 148
             ||||||||||||||||||||
Sbjct: 35690 tggctatccgctatagttgc 35671



to top

>gb|AC096051.7| Rattus norvegicus 10 BAC CH230-21G1 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 216194

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   ggccctggagctggccctgg 193
             ||||||||||||||||||||
Sbjct: 17250 ggccctggagctggccctgg 17231



to top

>gb|DQ131903.1| Homo sapiens interleukin 1 receptor-like 2 (IL1RL2) gene, complete
            cds
          Length = 56373

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 339  gttccctcctcacaaacctc 358
            ||||||||||||||||||||
Sbjct: 3875 gttccctcctcacaaacctc 3856



to top

>gb|AC148836.6| Pan troglodytes BAC clone CH251-2C8 from chromosome 7, complete sequence
          Length = 219717

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    tggctatccgctatagttgc 148
              ||||||||||||||||||||
Sbjct: 163913 tggctatccgctatagttgc 163894



to top

>emb|BX571969.5| Zebrafish DNA sequence from clone DKEY-93P1 in linkage group 11,
             complete sequence
          Length = 160905

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    tatatactacagaacacact 100
             ||||||||||||||||||||
Sbjct: 37444 tatatactacagaacacact 37425



to top

>dbj|AP006185.1| Sus scrofa CC chemokine receptor genes (CCR2, CCR5, CCRL2, LTF, TMEM7,
             LRRC2), complete cds, clone: 0475A03
          Length = 165558

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 200   ccgcttcaggcatagttcca 219
             ||||||||||||||||||||
Sbjct: 76059 ccgcttcaggcatagttcca 76078



to top

>ref|NM_017021.1| Rattus norvegicus interleukin 9 receptor (Il9r), mRNA
          Length = 3692

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  ggccctggagctggccctgg 193
            ||||||||||||||||||||
Sbjct: 1532 ggccctggagctggccctgg 1551



to top

>gb|AC007271.4| Homo sapiens BAC clone RP11-4B12 from 2, complete sequence
          Length = 179954

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 339    gttccctcctcacaaacctc 358
              ||||||||||||||||||||
Sbjct: 141375 gttccctcctcacaaacctc 141356



to top

>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence
          Length = 5888780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 172     gtggccctggagctggccct 191
               ||||||||||||||||||||
Sbjct: 1388356 gtggccctggagctggccct 1388337



to top

>emb|AL713850.6| Zebrafish DNA sequence from clone BUSM1-136D19 in linkage group 11,
             complete sequence
          Length = 99681

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 81    tatatactacagaacacact 100
             ||||||||||||||||||||
Sbjct: 15995 tatatactacagaacacact 15976



to top

>gb|L36459.1|RATGFI2A Rattus norvegicus gfi-2 mRNA, complete cds
          Length = 3692

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 174  ggccctggagctggccctgg 193
            ||||||||||||||||||||
Sbjct: 1532 ggccctggagctggccctgg 1551


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,109,127
Number of Sequences: 3902068
Number of extensions: 3109127
Number of successful extensions: 61817
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61665
Number of HSP's gapped (non-prelim): 149
length of query: 423
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 401
effective length of database: 17,147,199,772
effective search space: 6876027108572
effective search space used: 6876027108572
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top