>CARB_ANASP (Q8YQL2) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1104

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 11/25 (44%), Positives = 21/25 (84%)
 Frame = -1

Query: 466  GARATMDAIKSMKNKSIEILALQDY 392
            GA+AT+ AI+SM+N ++++  +Q+Y
Sbjct: 1076 GAKATVAAIRSMQNTTLDVKTIQEY 1100

>YM43_YEAST (Q03218) Hypothetical 56.2 kDa protein in SIP18-SPT21 intergenic|
           region
          Length = 510

 Score = 29.6 bits (65), Expect = 4.0
 Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
 Frame = +1

Query: 160 NPQHQFLTP-------------NTQQPNVVSTLAVGDYRSSR*AKSHMAQDCSSYTRIKT 300
           NPQ+Q L                T+Q +++S   + DY+SS+  ++      + ++   +
Sbjct: 75  NPQYQKLAEAFNSHDHVHLRESETEQNDIISLGTIRDYKSSKCEQADKPSSLNLHSHTHS 134

Query: 301 LHGKGRAHKGYDPKGRLVQLATSVVHQQAG 390
            HG   +H  ++P   L+ L+T  + + AG
Sbjct: 135 -HGHTHSHAAHNP---LLVLSTEQIRKNAG 160

>FSHR_FELCA (Q5GJ04) Follicle-stimulating hormone receptor precursor (FSH-R)|
           (Follitropin receptor)
          Length = 695

 Score = 29.3 bits (64), Expect = 5.2
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 319 LSLFHVMSLF*YMNYNLAPCGILLICCCDSHL-LPVSKPHLVAGCLESKI 173
           LS  +VMSL       L     ++ICCC +H+ L V  P++V+   ++KI
Sbjct: 526 LSQLYVMSLL-----VLNVLAFVVICCCYAHIYLTVRNPNIVSSSSDTKI 570

>PAFA_CAEEL (Q22943) Platelet-activating factor acetylhydrolase homolog 2 (EC|
           3.1.1.47)
          Length = 388

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 13/54 (24%), Positives = 27/54 (50%)
 Frame = +1

Query: 172 QFLTPNTQQPNVVSTLAVGDYRSSR*AKSHMAQDCSSYTRIKTLHGKGRAHKGY 333
           ++L  ++Q+ NV+++  VG+ R      + M+  C  +  +   HG G +   Y
Sbjct: 71  EYLGQSSQKMNVITSTVVGEKREDCIENAQMSTKCDKWPIVVFSHGLGGSRTFY 124

>COFE_HALMA (Q5UZQ7) F420-0:gamma-glutamyl ligase (EC 6.3.2.-)|
          Length = 257

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 274 CSSYTRIKTLHGKGRAHKGYDPKGRLVQLATSV 372
           C + T +   +G+GR+   Y+P GR  ++A ++
Sbjct: 35  CVASTIVSKANGRGRSLSSYEPSGRAERIAATI 67

>SYY_MIMIV (Q5UPJ7) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA|
           ligase) (TyrRS)
          Length = 346

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +1

Query: 262 MAQDCSSYTRIKTLHGKGR---AHKGYDPKGRL 351
           +A++C +  R+K L   GR   A+ G++P GR+
Sbjct: 19  IAEECETLDRLKQLVDSGRIFTAYNGFEPSGRI 51

>CARB_BRUSU (Q8FZJ3) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1162

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 466  GARATMDAIKSMKNKSIEILALQDYF 389
            GA +  +AI ++K  S+E+  LQDYF
Sbjct: 1135 GAESAAEAIAALKAGSLEVRPLQDYF 1160

>CARB_BRUME (Q8YIC2) Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)|
            (Carbamoyl-phosphate synthetase ammonia chain)
          Length = 1162

 Score = 28.5 bits (62), Expect = 8.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = -1

Query: 466  GARATMDAIKSMKNKSIEILALQDYF 389
            GA +  +AI ++K  S+E+  LQDYF
Sbjct: 1135 GAESAAEAIAALKAGSLEVRPLQDYF 1160


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,957,516
Number of Sequences: 219361
Number of extensions: 1559240
Number of successful extensions: 3282
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3279
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3014947676
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)