ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl30f12 |
|---|---|
| Clone Library Name | barley_pub |
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 67.8 bits (164), Expect = 7e-12 Identities = 34/41 (82%), Positives = 35/41 (85%), Gaps = 5/41 (12%) Frame = -1 Query: 270 RHGAGMVPYVLLRPS-----DGDPPDQKMVMEMGIPNSISI 163 RHGAGMVPYVLLRPS DGDP D+KMVMEMGIPNSISI Sbjct: 896 RHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGIPNSISI 936
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 62.4 bits (150), Expect = 3e-10 Identities = 29/36 (80%), Positives = 32/36 (88%) Frame = -1 Query: 270 RHGAGMVPYVLLRPSDGDPPDQKMVMEMGIPNSISI 163 RHGAG+VPYVLLRP +G+P D K VMEMGIPNSISI Sbjct: 897 RHGAGVVPYVLLRPLNGNPMDAKTVMEMGIPNSISI 932
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 32.3 bits (72), Expect = 0.32 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%) Frame = -1 Query: 270 RHGAGMVPYVLLRPSDGDPPDQK--MVMEMGIPNSISI 163 R+G +PY+LL P+ D +K + MGIPNSISI Sbjct: 840 RNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNSISI 877
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 32.3 bits (72), Expect = 0.32 Identities = 20/36 (55%), Positives = 23/36 (63%) Frame = -1 Query: 270 RHGAGMVPYVLLRPSDGDPPDQKMVMEMGIPNSISI 163 R GAG++PY LL PS PP V G+PNSISI Sbjct: 888 RCGAGVLPYELLAPS--SPPG---VTCRGVPNSISI 918
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 32.0 bits (71), Expect = 0.42 Identities = 19/36 (52%), Positives = 22/36 (61%) Frame = -1 Query: 270 RHGAGMVPYVLLRPSDGDPPDQKMVMEMGIPNSISI 163 R GAG+VPY LL+P + V GIPNSISI Sbjct: 866 RCGAGIVPYELLKPF-----SEPGVTGRGIPNSISI 896
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 30.4 bits (67), Expect = 1.2 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -1 Query: 270 RHGAGMVPYVLLRP-SDGDPPDQKMVMEMGIPNSISI 163 R GAG++PY L++P SD V MGIPNS SI Sbjct: 894 RCGAGILPYQLMKPFSDSG------VTGMGIPNSTSI 924
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 30.4 bits (67), Expect = 1.2 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 1/37 (2%) Frame = -1 Query: 270 RHGAGMVPYVLLRP-SDGDPPDQKMVMEMGIPNSISI 163 R GAG++PY L++P SD V MGIPNS SI Sbjct: 911 RCGAGILPYQLMKPFSDAG------VTGMGIPNSTSI 941
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 30.0 bits (66), Expect = 1.6 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = -1 Query: 270 RHGAGMVPYVLLRPSDGDPPDQKMVMEMGIPNSISI 163 R GAG++PY L+ PS G + G+PNS++I Sbjct: 869 RCGAGVLPYELMAPSSGPG-----ITCRGVPNSVTI 899
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 29.3 bits (64), Expect = 2.7 Identities = 17/36 (47%), Positives = 22/36 (61%) Frame = -1 Query: 270 RHGAGMVPYVLLRPSDGDPPDQKMVMEMGIPNSISI 163 R GAG+V Y LL+P+ + V MG+P SISI Sbjct: 866 RAGAGVVKYELLKPT-----SEHGVTGMGVPYSISI 896
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 28.9 bits (63), Expect = 3.6 Identities = 17/36 (47%), Positives = 21/36 (58%) Frame = -1 Query: 270 RHGAGMVPYVLLRPSDGDPPDQKMVMEMGIPNSISI 163 RHG +PY LL PS ++ + GIPNSISI Sbjct: 831 RHGPVEMPYTLLYPS-----SKEGLTFRGIPNSISI 861
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = -1 Query: 270 RHGAGMVPYVLLRPSDGDPPDQKM-VMEMGIPNSISI 163 R+G PY+LL P+ D + GIPNSISI Sbjct: 830 RNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSISI 866
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 28.5 bits (62), Expect = 4.7 Identities = 16/36 (44%), Positives = 21/36 (58%) Frame = -1 Query: 270 RHGAGMVPYVLLRPSDGDPPDQKMVMEMGIPNSISI 163 R+G +PY LL PS ++ + GIPNSISI Sbjct: 823 RYGPAKMPYTLLYPS-----SEEGLTFRGIPNSISI 853
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 28.1 bits (61), Expect = 6.1 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 1/37 (2%) Frame = -1 Query: 270 RHGAGMVPYVLLRPSDGDPPDQKM-VMEMGIPNSISI 163 R+G PY+LL P+ D + GIPNSISI Sbjct: 826 RNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSISI 862
>HLES_DROME (Q02308) Protein hairless| Length = 1077 Score = 27.7 bits (60), Expect = 8.0 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = -3 Query: 250 AVCAAQAVGR*SPGPEXXXXXGHPQQHLH 164 A AA A G+ +P P HP QH H Sbjct: 968 AAAAAAAFGQPAPSPHTHPHLAHPHQHPH 996
>BINB3_BACSH (P12964) Larvicidal toxin 51 kDa protein (Strains| IAB59/IAB872/IAB881/PR1/ 9002) Length = 448 Score = 27.7 bits (60), Expect = 8.0 Identities = 15/65 (23%), Positives = 27/65 (41%) Frame = +2 Query: 74 FPLYPPPGQETEDTLIYA*LSYTHTHRAAQMEMLLGMPISITIFWSGGSPSDGLSSTYGT 253 FP+YPP + + + + Q +L +P ++ SG P D + + G+ Sbjct: 177 FPIYPPASETQLTAFVNSSFYAAAIPQLPQTSLLENIPEPTSLDDSGVLPKDAVRAVKGS 236 Query: 254 MPAPC 268 PC Sbjct: 237 ALLPC 241
>BINB2_BACSH (P18568) Larvicidal toxin 51 kDa protein (Strain 2297)| Length = 448 Score = 27.7 bits (60), Expect = 8.0 Identities = 15/65 (23%), Positives = 27/65 (41%) Frame = +2 Query: 74 FPLYPPPGQETEDTLIYA*LSYTHTHRAAQMEMLLGMPISITIFWSGGSPSDGLSSTYGT 253 FP+YPP + + + + Q +L +P ++ SG P D + + G+ Sbjct: 177 FPIYPPASETQLTAFVNSSFYAAAIPQLPQTSLLENIPEPTSLDDSGVLPKDAVRAVKGS 236 Query: 254 MPAPC 268 PC Sbjct: 237 ALLPC 241
>BINB1_BACSH (P10565) Larvicidal toxin 51 kDa protein (Strains 1593/2362)| Length = 448 Score = 27.7 bits (60), Expect = 8.0 Identities = 15/65 (23%), Positives = 27/65 (41%) Frame = +2 Query: 74 FPLYPPPGQETEDTLIYA*LSYTHTHRAAQMEMLLGMPISITIFWSGGSPSDGLSSTYGT 253 FP+YPP + + + + Q +L +P ++ SG P D + + G+ Sbjct: 177 FPIYPPASETQLTAFVNSSFYAAAIPQLPQTSLLENIPEPTSLDDSGVLPKDAVRAVKGS 236 Query: 254 MPAPC 268 PC Sbjct: 237 ALLPC 241 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,398,095 Number of Sequences: 219361 Number of extensions: 855226 Number of successful extensions: 2076 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2009 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2065 length of database: 80,573,946 effective HSP length: 65 effective length of database: 66,315,481 effective search space used: 1591571544 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
