ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30f12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible l... 167 2e-38
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 86 7e-14
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 86 7e-14
4emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa... 86 7e-14
5emb|AJ270938.1|OSA270938 Oryza sativa mRNA for lipoxygenase (rci... 68 2e-08
6dbj|AK072241.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
7dbj|AK066737.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
8emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa... 68 2e-08
9emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2... 60 4e-06
10ref|XM_469412.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-04
11ref|XM_469411.1| Oryza sativa (japonica cultivar-group), mRNA 54 2e-04
12gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosom... 54 2e-04
13gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 2e-04
14emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2... 54 2e-04
15gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual posit... 54 2e-04
16dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 2e-04
17dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
18dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
19dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
20dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 2e-04
21gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full... 52 0.001
22gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds 52 0.001
23gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, co... 52 0.001
24gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-... 52 0.001
25gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 50 0.004
26gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 geno... 50 0.004
27gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome... 50 0.004
28ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 48 0.014
29gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRN... 48 0.014
30emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 48 0.014
31gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 48 0.014
32gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds 48 0.014
33dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.014
34gb|AY111869.1| Zea mays CL452_-8 mRNA sequence 48 0.014
35gb|AY103567.1| Zea mays PCO116252 mRNA sequence 48 0.014
36gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partia... 48 0.014
37gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds 48 0.014
38ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.22
39dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.22
40dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.22
41dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.22
42dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.22
43ref|XM_469409.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.89
44ref|XM_524799.1| PREDICTED: Pan troglodytes similar to potassium... 42 0.89
45ref|NM_005549.2| Homo sapiens potassium voltage-gated channel, s... 42 0.89
46gb|BC074990.2| Homo sapiens potassium voltage-gated channel, sha... 42 0.89
47gb|AC132405.3| Mus musculus BAC clone RP23-332I1 from chromosome... 42 0.89
48ref|XM_582224.2| PREDICTED: Bos taurus similar to potassium volt... 42 0.89
49ref|XM_983966.1| PREDICTED: Mus musculus potassium voltage-gated... 42 0.89
50ref|XM_143471.4| PREDICTED: Mus musculus potassium voltage-gated... 42 0.89
51ref|XM_547232.2| PREDICTED: Canis familiaris similar to potassiu... 42 0.89
52emb|AL358215.16| Human DNA sequence from clone RP11-470L19 on ch... 42 0.89
53gb|BC069165.1| Homo sapiens cDNA clone IMAGE:7216995 42 0.89
54dbj|AK157965.1| Mus musculus adult inner ear cDNA, RIKEN full-le... 42 0.89
55gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genom... 42 0.89
56ref|XM_227577.3| PREDICTED: Rattus norvegicus potassium voltage-... 42 0.89
57gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complet... 42 0.89
58gb|U96110.1|HSU96110 Homo sapiens cyclic GMP gated potassium cha... 42 0.89
59gb|U38182.1|OCU38182 Oryctolagus cuniculus cGMP-gated potassium ... 42 0.89
60ref|XM_946728.1| Theileria annulata strain Ankara hypothetical p... 40 3.5
61gb|AC010012.5| Drosophila melanogaster 3L BAC RP98-22J16 (Roswel... 40 3.5
62gb|AY110522.1| Zea mays CL4677_2 mRNA sequence 40 3.5
63gb|AY104322.1| Zea mays PCO093659 mRNA sequence 40 3.5
64gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 ... 40 3.5 
>gb|U56406.1|HVU56406 Hordeum vulgare methyljasmonate-inducible lipoxygenase 2 mRNA,
            complete cds
          Length = 3054

 Score =  167 bits (84), Expect = 2e-38
 Identities = 93/96 (96%)
 Strand = Plus / Minus

                                                                        
Query: 42   catcgggtcctttaattataattgggggctcattcccattatacccaccgccgggccaag 101
            ||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 3034 catcgtgtcctttaattataatttggtgctcattcccattatacccaccgccgggccaag 2975

                                                
Query: 102  agactgaagacactcttatttacgcctagttgagtt 137
            ||||||||||||||||||||||||||||||||||||
Sbjct: 2974 agactgaagacactcttatttacgcctagttgagtt 2939



 Score =  131 bits (66), Expect = 1e-27
 Identities = 72/74 (97%)
 Strand = Plus / Minus

                                                                        
Query: 154  ggcagctcaaatggagatgctgttggggatgcccatctccatcaccatcttctggtccgg 213
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| 
Sbjct: 2922 ggcagctcaaatggagatgctgttggggatgcccatctccatcaccatcttctcgtccgt 2863

                          
Query: 214  gggatcaccgtccg 227
            ||||||||||||||
Sbjct: 2862 gggatcaccgtccg 2849



 Score =  117 bits (59), Expect = 2e-23
 Identities = 62/63 (98%)
 Strand = Plus / Minus

                                                                        
Query: 208  gtccgggggatcaccgtccgacggcctgagcagcacatacggcaccatgccggcgccgtg 267
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2853 gtccgtgggatcaccgtccgacggcctgagcagcacatacggcaccatgccggcgccgtg 2794

               
Query: 268  tcg 270
            |||
Sbjct: 2793 tcg 2791
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                           
Query: 157      agctcaaatggagatgctgttggggatgcccatctccatcacc 199
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22970463 agctcaaatggagatgctgttggggatgcccatctccatcacc 22970421



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 85/102 (83%)
 Strand = Plus / Plus

                                                                            
Query: 159      ctcaaatggagatgctgttggggatgcccatctccatcaccatcttctggtccgggggat 218
                ||||||| ||||||||||||||||| ||||||||||||||   | ||  ||||   || |
Sbjct: 22888635 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 22888694

                                                          
Query: 219      caccgtccgacggcctgagcagcacatacggcaccatgccgg 260
                ||||||  |||||| |||||||||| |||||||||| |||||
Sbjct: 22888695 caccgtaggacggcttgagcagcacgtacggcaccacgccgg 22888736
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                           
Query: 157      agctcaaatggagatgctgttggggatgcccatctccatcacc 199
                |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 22898654 agctcaaatggagatgctgttggggatgcccatctccatcacc 22898612



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 85/102 (83%)
 Strand = Plus / Plus

                                                                            
Query: 159      ctcaaatggagatgctgttggggatgcccatctccatcaccatcttctggtccgggggat 218
                ||||||| ||||||||||||||||| ||||||||||||||   | ||  ||||   || |
Sbjct: 22816826 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 22816885

                                                          
Query: 219      caccgtccgacggcctgagcagcacatacggcaccatgccgg 260
                ||||||  |||||| |||||||||| |||||||||| |||||
Sbjct: 22816886 caccgtaggacggcttgagcagcacgtacggcaccacgccgg 22816927
to top
>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 155568

 Score = 85.7 bits (43), Expect = 7e-14
 Identities = 43/43 (100%)
 Strand = Plus / Minus

                                                        
Query: 157   agctcaaatggagatgctgttggggatgcccatctccatcacc 199
             |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79740 agctcaaatggagatgctgttggggatgcccatctccatcacc 79698
to top
>emb|AJ270938.1|OSA270938 Oryza sativa mRNA for lipoxygenase (rci-1 gene)
          Length = 3018

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                        
Query: 159  ctcaaatggagatgctgttggggatgcccatctccatcaccatcttctggtccgggggat 218
            ||||||| ||||||||||||||||| ||||||||||||||   | ||  ||||   || |
Sbjct: 2817 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 2758

                                                      
Query: 219  caccgtccgacggcctgagcagcacatacggcaccatgccgg 260
            ||||||  |||||| |||||||||| |||||||||| |||||
Sbjct: 2757 caccgtaggacggcttgagcagcacgtacggcaccacgccgg 2716
to top
>dbj|AK072241.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002P20, full
            insert sequence
          Length = 3080

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                        
Query: 159  ctcaaatggagatgctgttggggatgcccatctccatcaccatcttctggtccgggggat 218
            ||||||| ||||||||||||||||| ||||||||||||||   | ||  ||||   || |
Sbjct: 2836 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 2777

                                                      
Query: 219  caccgtccgacggcctgagcagcacatacggcaccatgccgg 260
            ||||||  |||||| |||||||||| |||||||||| |||||
Sbjct: 2776 caccgtaggacggcttgagcagcacgtacggcaccacgccgg 2735
to top
>dbj|AK066737.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013079G10, full
            insert sequence
          Length = 2747

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                        
Query: 159  ctcaaatggagatgctgttggggatgcccatctccatcaccatcttctggtccgggggat 218
            ||||||| ||||||||||||||||| ||||||||||||||   | ||  ||||   || |
Sbjct: 2343 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 2284

                                                      
Query: 219  caccgtccgacggcctgagcagcacatacggcaccatgccgg 260
            ||||||  |||||| |||||||||| |||||||||| |||||
Sbjct: 2283 caccgtaggacggcttgagcagcacgtacggcaccacgccgg 2242
to top
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 148705

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 85/102 (83%)
 Strand = Plus / Minus

                                                                         
Query: 159   ctcaaatggagatgctgttggggatgcccatctccatcaccatcttctggtccgggggat 218
             ||||||| ||||||||||||||||| ||||||||||||||   | ||  ||||   || |
Sbjct: 68209 ctcaaattgagatgctgttggggatacccatctccatcacggacgtcatgtccttagggt 68150

                                                       
Query: 219   caccgtccgacggcctgagcagcacatacggcaccatgccgg 260
             ||||||  |||||| |||||||||| |||||||||| |||||
Sbjct: 68149 caccgtaggacggcttgagcagcacgtacggcaccacgccgg 68108
to top
>emb|AJ507212.1|HVU507212 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:2 gene)
          Length = 3023

 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 87/106 (82%)
 Strand = Plus / Minus

                                                                        
Query: 162  aaatggagatgctgttggggatgcccatctccatcaccatcttctggtccgggggatcac 221
            ||||||| |||||||| || |||||||||||||||||| | ||   ||||   |||| ||
Sbjct: 2892 aaatggaaatgctgttcggaatgcccatctccatcaccgttttagcgtccatcggattac 2833

                                                          
Query: 222  cgtccgacggcctgagcagcacatacggcaccatgccggcgccgtg 267
            ||| | | |||||||||||||| |||||||| | |||||| |||||
Sbjct: 2832 cgttcaatggcctgagcagcacgtacggcactacgccggcaccgtg 2787
to top
>ref|XM_469412.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2686

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 159  ctcaaatggagatgctgttggggatgcccat 189
            |||| ||||||||||||||||||||||||||
Sbjct: 2447 ctcagatggagatgctgttggggatgcccat 2417
to top
>ref|XM_469411.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3165

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 159  ctcaaatggagatgctgttggggatgcccat 189
            |||| ||||||||||||||||||||||||||
Sbjct: 2926 ctcagatggagatgctgttggggatgcccat 2896
to top
>gb|AC093017.10| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0024B16
             map S2606, complete sequence
          Length = 124140

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                            
Query: 159   ctcaaatggagatgctgttggggatgcccat 189
             |||| ||||||||||||||||||||||||||
Sbjct: 65817 ctcagatggagatgctgttggggatgcccat 65787



 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 167   gagatgctgttggggatgccc 187
             |||||||||||||||||||||
Sbjct: 47230 gagatgctgttggggatgccc 47210
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 159      ctcaaatggagatgctgttggggatgcccat 189
                |||| ||||||||||||||||||||||||||
Sbjct: 27821687 ctcagatggagatgctgttggggatgcccat 27821657



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 159      ctcaaatggagatgctgttggggatgccc 187
                ||||||||| |||||||||||||||||||
Sbjct: 14300017 ctcaaatggtgatgctgttggggatgccc 14300045



 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 164      atggagatgctgttggggatgccc 187
                ||||||||||||||||||||||||
Sbjct: 30026445 atggagatgctgttggggatgccc 30026422



 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 167      gagatgctgttggggatgccc 187
                |||||||||||||||||||||
Sbjct: 27803100 gagatgctgttggggatgccc 27803080
to top
>emb|AJ507213.1|HVU507213 Hordeum vulgare mRNA for lipoxygenase 2 (lox2:Hv:3 gene)
          Length = 2967

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 160  tcaaatggagatgctgttggggatgcc 186
            |||||||||||||||||||||||||||
Sbjct: 2774 tcaaatggagatgctgttggggatgcc 2748



 Score = 42.1 bits (21), Expect = 0.89
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                 
Query: 228  acggcctgagcagcacatacggcaccatgccggcgcc 264
            ||||| |||||||| | |||||||| |||||||||||
Sbjct: 2721 acggcttgagcagctcgtacggcacgatgccggcgcc 2685
to top
>gb|DQ389164.1| Oryza sativa (japonica cultivar-group) dual positional specificity
            lipoxygenase mRNA, complete cds
          Length = 3154

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 159  ctcaaatggagatgctgttggggatgcccat 189
            |||| ||||||||||||||||||||||||||
Sbjct: 2920 ctcagatggagatgctgttggggatgcccat 2890
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                               
Query: 159      ctcaaatggagatgctgttggggatgcccat 189
                |||| ||||||||||||||||||||||||||
Sbjct: 27913011 ctcagatggagatgctgttggggatgcccat 27912981



 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 159      ctcaaatggagatgctgttggggatgccc 187
                ||||||||| |||||||||||||||||||
Sbjct: 14294992 ctcaaatggtgatgctgttggggatgccc 14295020



 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 164      atggagatgctgttggggatgccc 187
                ||||||||||||||||||||||||
Sbjct: 30117867 atggagatgctgttggggatgccc 30117844



 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 167      gagatgctgttggggatgccc 187
                |||||||||||||||||||||
Sbjct: 27894424 gagatgctgttggggatgccc 27894404
to top
>dbj|AK105792.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H08, full
            insert sequence
          Length = 1560

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 159  ctcaaatggagatgctgttggggatgcccat 189
            |||| ||||||||||||||||||||||||||
Sbjct: 1333 ctcagatggagatgctgttggggatgcccat 1303
to top
>dbj|AK072869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143O17, full
            insert sequence
          Length = 2851

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 159  ctcaaatggagatgctgttggggatgcccat 189
            |||| ||||||||||||||||||||||||||
Sbjct: 2598 ctcagatggagatgctgttggggatgcccat 2568
to top
>dbj|AK072689.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full
            insert sequence
          Length = 3167

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 159  ctcaaatggagatgctgttggggatgcccat 189
            |||| ||||||||||||||||||||||||||
Sbjct: 2928 ctcagatggagatgctgttggggatgcccat 2898
to top
>dbj|AK071121.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023079P11, full
            insert sequence
          Length = 1726

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 159  ctcaaatggagatgctgttggggatgcccat 189
            |||| ||||||||||||||||||||||||||
Sbjct: 1498 ctcagatggagatgctgttggggatgcccat 1468
to top
>gb|BT008992.1| Triticum aestivum clone wdk2c.pk011.j13:fis, full insert mRNA
           sequence
          Length = 1020

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                         
Query: 158 gctcaaatggagatgctgttggggatgccc 187
           ||||| ||||||||||||||||||||||||
Sbjct: 755 gctcagatggagatgctgttggggatgccc 726
to top
>gb|AF465643.1| Zea mays B73 lipoxygenase gene, complete cds
          Length = 5013

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 158  gctcaaatggagatgctgttggggatgccc 187
            ||||| ||||||||||||||||||||||||
Sbjct: 4664 gctcagatggagatgctgttggggatgccc 4635
to top
>gb|L37359.1|BLYLOXB Hordeum vulgare lipoxygenase (LoxB) mRNA, complete cds
          Length = 3003

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 156  cagctcaaatggagatgctgttggggatgcccat 189
            ||||||| ||||||| ||||||||||||||||||
Sbjct: 2768 cagctcagatggagacgctgttggggatgcccat 2735
to top
>gb|AF149803.1|AF149803 Zea mays lipoxygenase mRNA, lipoxygenase-L2 allele, partial cds
          Length = 2267

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 29/30 (96%)
 Strand = Plus / Minus

                                          
Query: 158  gctcaaatggagatgctgttggggatgccc 187
            ||||| ||||||||||||||||||||||||
Sbjct: 2066 gctcagatggagatgctgttggggatgccc 2037
to top
>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA
           sequence
          Length = 1129

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 159 ctcaaatggagatgctgttggggatgccc 187
           |||| ||||||||||||||||||||||||
Sbjct: 907 ctcagatggagatgctgttggggatgccc 879
to top
>gb|AC082644.10| Oryza sativa chromosome 3 BAC OSJNBa0013M12 genomic sequence, complete
             sequence
          Length = 158714

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                          
Query: 159   ctcaaatggagatgctgttggggatgccc 187
             ||||||||| |||||||||||||||||||
Sbjct: 49246 ctcaaatggtgatgctgttggggatgccc 49274
to top
>gb|AC144427.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNAb0012F18,
              complete sequence
          Length = 122159

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                           
Query: 159    ctcaaatggagatgctgttggggatgccc 187
              ||||||||| |||||||||||||||||||
Sbjct: 111405 ctcaaatggtgatgctgttggggatgccc 111433
to top
>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 164  atggagatgctgttggggatgccc 187
            ||||||||||||||||||||||||
Sbjct: 2609 atggagatgctgttggggatgccc 2586
to top
>gb|AY220737.1| Hordeum vulgare lipoxygenase 1 protein (LOXA) mRNA, partial cds
          Length = 1331

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 164  atggagatgctgttggggatgccc 187
            ||||||||||||||||||||||||
Sbjct: 1082 atggagatgctgttggggatgccc 1059
to top
>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 164  atggagatgctgttggggatgccc 187
            ||||||||||||||||||||||||
Sbjct: 2691 atggagatgctgttggggatgccc 2668
to top
>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 164   atggagatgctgttggggatgccc 187
             ||||||||||||||||||||||||
Sbjct: 81306 atggagatgctgttggggatgccc 81329
to top
>gb|AF329371.1|AF329371 Zea mays lipoxygenase mRNA, complete cds
          Length = 2595

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 164  atggagatgctgttggggatgccc 187
            ||||||||||||||||||||||||
Sbjct: 2591 atggagatgctgttggggatgccc 2568
to top
>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
            insert sequence
          Length = 2928

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 164  atggagatgctgttggggatgccc 187
            ||||||||||||||||||||||||
Sbjct: 2724 atggagatgctgttggggatgccc 2701
to top
>gb|AY111869.1| Zea mays CL452_-8 mRNA sequence
          Length = 568

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 158 gctcaaatggagatgctgttggggatgcccat 189
           ||||| ||||||||||||||||| ||||||||
Sbjct: 369 gctcatatggagatgctgttgggaatgcccat 338
to top
>gb|AY103567.1| Zea mays PCO116252 mRNA sequence
          Length = 3135

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 158  gctcaaatggagatgctgttggggatgcccat 189
            ||||| ||||||||||||||||| ||||||||
Sbjct: 2902 gctcatatggagatgctgttgggaatgcccat 2871
to top
>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds
          Length = 1814

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 164  atggagatgctgttggggatgccc 187
            ||||||||||||||||||||||||
Sbjct: 1552 atggagatgctgttggggatgccc 1529
to top
>gb|L35931.1|BLYLOXA Barley lipoxygenase 1 (LoxA) gene, complete cds
          Length = 2818

 Score = 48.1 bits (24), Expect = 0.014
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 164  atggagatgctgttggggatgccc 187
            ||||||||||||||||||||||||
Sbjct: 2653 atggagatgctgttggggatgccc 2630
to top
>ref|XM_464447.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3123

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 228  acggcctgagcagcacatacggcaccatgccggcgccg 265
            ||||| |||||||| | |||||||| ||||||||||||
Sbjct: 2828 acggcttgagcagctcgtacggcacgatgccggcgccg 2791



 Score = 42.1 bits (21), Expect = 0.89
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 159  ctcaaatggagatgctgttggggatgccc 187
            |||| |||||||||||||| |||||||||
Sbjct: 2882 ctcagatggagatgctgtttgggatgccc 2854
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                     
Query: 228     acggcctgagcagcacatacggcaccatgccggcgccg 265
               ||||| |||||||| | |||||||| ||||||||||||
Sbjct: 5277016 acggcttgagcagctcgtacggcacgatgccggcgccg 5277053



 Score = 42.1 bits (21), Expect = 0.89
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                            
Query: 159     ctcaaatggagatgctgttggggatgccc 187
               |||| |||||||||||||| |||||||||
Sbjct: 5276962 ctcagatggagatgctgtttgggatgccc 5276990
to top
>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1225_F07
          Length = 142772

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                  
Query: 228  acggcctgagcagcacatacggcaccatgccggcgccg 265
            ||||| |||||||| | |||||||| ||||||||||||
Sbjct: 3319 acggcttgagcagctcgtacggcacgatgccggcgccg 3356



 Score = 42.1 bits (21), Expect = 0.89
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                         
Query: 159  ctcaaatggagatgctgttggggatgccc 187
            |||| |||||||||||||| |||||||||
Sbjct: 3265 ctcagatggagatgctgtttgggatgccc 3293
to top
>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full
            insert sequence
          Length = 3160

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 228  acggcctgagcagcacatacggcaccatgccggcgccg 265
            ||||| |||||||| | |||||||| ||||||||||||
Sbjct: 2827 acggcttgagcagctcgtacggcacgatgccggcgccg 2790



 Score = 42.1 bits (21), Expect = 0.89
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 159  ctcaaatggagatgctgttggggatgccc 187
            |||| |||||||||||||| |||||||||
Sbjct: 2881 ctcagatggagatgctgtttgggatgccc 2853
to top
>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full
            insert sequence
          Length = 2250

 Score = 44.1 bits (22), Expect = 0.22
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 228  acggcctgagcagcacatacggcaccatgccggcgccg 265
            ||||| |||||||| | |||||||| ||||||||||||
Sbjct: 1989 acggcttgagcagctcgtacggcacgatgccggcgccg 1952



 Score = 42.1 bits (21), Expect = 0.89
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 159  ctcaaatggagatgctgttggggatgccc 187
            |||| |||||||||||||| |||||||||
Sbjct: 2043 ctcagatggagatgctgtttgggatgccc 2015
to top
>ref|XM_469409.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2601

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 167  gagatgctgttggggatgccc 187
            |||||||||||||||||||||
Sbjct: 2594 gagatgctgttggggatgccc 2574
to top
>ref|XM_524799.1| PREDICTED: Pan troglodytes similar to potassium voltage-gated
           channel, shaker-related subfamily, member 10; cyclic GMP
           gated potassium channel (LOC469414), mRNA
          Length = 1671

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 187 catctccatcaccatcttctg 207
           |||||||||||||||||||||
Sbjct: 681 catctccatcaccatcttctg 701
to top
>ref|NM_005549.2| Homo sapiens potassium voltage-gated channel, shaker-related
            subfamily, member 10 (KCNA10), mRNA
          Length = 1959

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 187  catctccatcaccatcttctg 207
            |||||||||||||||||||||
Sbjct: 1069 catctccatcaccatcttctg 1089
to top
>gb|BC074990.2| Homo sapiens potassium voltage-gated channel, shaker-related
           subfamily, member 10, mRNA (cDNA clone MGC:103916
           IMAGE:30915306), complete cds
          Length = 1599

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 187 catctccatcaccatcttctg 207
           |||||||||||||||||||||
Sbjct: 711 catctccatcaccatcttctg 731
to top
>gb|AC132405.3| Mus musculus BAC clone RP23-332I1 from chromosome 3, complete sequence
          Length = 207726

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 187    catctccatcaccatcttctg 207
              |||||||||||||||||||||
Sbjct: 187186 catctccatcaccatcttctg 187166
to top
>ref|XM_582224.2| PREDICTED: Bos taurus similar to potassium voltage-gated channel,
           shaker-related subfamily, member 10 (LOC538721), mRNA
          Length = 1643

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 187 catctccatcaccatcttctg 207
           |||||||||||||||||||||
Sbjct: 762 catctccatcaccatcttctg 782
to top
>ref|XM_983966.1| PREDICTED: Mus musculus potassium voltage-gated channel,
           shaker-related subfamily, member 10 (Kcna10), mRNA
          Length = 1826

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 187 catctccatcaccatcttctg 207
           |||||||||||||||||||||
Sbjct: 840 catctccatcaccatcttctg 860
to top
>ref|XM_143471.4| PREDICTED: Mus musculus potassium voltage-gated channel,
           shaker-related subfamily, member 10 (Kcna10), mRNA
          Length = 1826

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 187 catctccatcaccatcttctg 207
           |||||||||||||||||||||
Sbjct: 840 catctccatcaccatcttctg 860
to top
>ref|XM_547232.2| PREDICTED: Canis familiaris similar to potassium voltage-gated
           channel, shaker-related subfamily, member 10
           (LOC490111), mRNA
          Length = 1650

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 187 catctccatcaccatcttctg 207
           |||||||||||||||||||||
Sbjct: 795 catctccatcaccatcttctg 815
to top
>emb|AL358215.16| Human DNA sequence from clone RP11-470L19 on chromosome 1 Contains the
             3' end of the PROK1 gene for Prokineticin 1, a putatative
             novel transcript, an unprocessed pseudogene, a novel
             transcript and the LOC395116 gene for the shaker subfamily
             potassium channel KCNA10, complete sequence
          Length = 101529

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 187   catctccatcaccatcttctg 207
             |||||||||||||||||||||
Sbjct: 64506 catctccatcaccatcttctg 64486
to top
>gb|BC069165.1| Homo sapiens cDNA clone IMAGE:7216995
          Length = 1959

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 187 catctccatcaccatcttctg 207
           |||||||||||||||||||||
Sbjct: 891 catctccatcaccatcttctg 871
to top
>dbj|AK157965.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
           library, clone:F930012I12 product:Cyclic GMP gated
           potassium channel homolog [Homo sapiens], full insert
           sequence
          Length = 1827

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 187 catctccatcaccatcttctg 207
           |||||||||||||||||||||
Sbjct: 841 catctccatcaccatcttctg 861
to top
>gb|AC097368.3| Oryza sativa chromosome 3 BAC OSJNBb0017F17 genomic sequence, complete
             sequence
          Length = 119329

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 167   gagatgctgttggggatgccc 187
             |||||||||||||||||||||
Sbjct: 10793 gagatgctgttggggatgccc 10813
to top
>ref|XM_227577.3| PREDICTED: Rattus norvegicus potassium voltage-gated channel,
           shaker-related subfamily, member 10 (predicted)
           (Kcna10_predicted), mRNA
          Length = 1603

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 187 catctccatcaccatcttctg 207
           |||||||||||||||||||||
Sbjct: 710 catctccatcaccatcttctg 730
to top
>gb|AF271894.1|AF271894 Zea mays lipoxygenase (LOX) mRNA, complete cds
          Length = 2845

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 159  ctcaaatggagatgctgttggggatgccc 187
            ||||||||||||||||||| || ||||||
Sbjct: 2623 ctcaaatggagatgctgtttggaatgccc 2595
to top
>gb|U96110.1|HSU96110 Homo sapiens cyclic GMP gated potassium channel (Kcn1) gene,
           complete cds
          Length = 1580

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 187 catctccatcaccatcttctg 207
           |||||||||||||||||||||
Sbjct: 690 catctccatcaccatcttctg 710
to top
>gb|U38182.1|OCU38182 Oryctolagus cuniculus cGMP-gated potassium channel (Kcn1) mRNA,
            complete cds
          Length = 2178

 Score = 42.1 bits (21), Expect = 0.89
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 187  catctccatcaccatcttctg 207
            |||||||||||||||||||||
Sbjct: 1320 catctccatcaccatcttctg 1340
to top
>ref|XM_946728.1| Theileria annulata strain Ankara hypothetical protein (TA15705)
           partial mRNA
          Length = 1008

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 186 ccatctccatcaccatcttc 205
           ||||||||||||||||||||
Sbjct: 95  ccatctccatcaccatcttc 76
to top
>gb|AC010012.5| Drosophila melanogaster 3L BAC RP98-22J16 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 170466

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   ccatctccatcaccatcttc 205
             ||||||||||||||||||||
Sbjct: 69693 ccatctccatcaccatcttc 69712
to top
>gb|AY110522.1| Zea mays CL4677_2 mRNA sequence
          Length = 1304

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 164 atggagatgctgttggggatgccc 187
           |||||||||||| |||||||||||
Sbjct: 138 atggagatgctgctggggatgccc 161
to top
>gb|AY104322.1| Zea mays PCO093659 mRNA sequence
          Length = 1439

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 164  atggagatgctgttggggatgccc 187
            |||||||||||| |||||||||||
Sbjct: 1210 atggagatgctgctggggatgccc 1187
to top
>gb|AE003474.4| Drosophila melanogaster chromosome 3L, section 8 of 83 of the complete
              sequence
          Length = 312072

 Score = 40.1 bits (20), Expect = 3.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 186    ccatctccatcaccatcttc 205
              ||||||||||||||||||||
Sbjct: 127765 ccatctccatcaccatcttc 127784


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,779,478
Number of Sequences: 3902068
Number of extensions: 1779478
Number of successful extensions: 37958
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37761
Number of HSP's gapped (non-prelim): 197
length of query: 270
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 248
effective length of database: 17,147,199,772
effective search space: 4252505543456
effective search space used: 4252505543456
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top