ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30f11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygena... 30 1.6
2LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase... 30 2.0
3LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2) 28 5.9
4NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 pr... 28 5.9
5NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 pr... 28 5.9
6CB024_HUMAN (Q9BV87) Protein C2orf24 28 7.8
7LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12) 28 7.8

>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)|
          Length = 863

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 13/15 (86%), Positives = 15/15 (100%)
 Frame = -2

Query: 297 AEGLSARGIPNSISI 253
           AEG++ARGIPNSISI
Sbjct: 849 AEGITARGIPNSISI 863



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>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)|
          Length = 870

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = -2

Query: 297 AEGLSARGIPNSISI 253
           A GLSARGIPNSISI
Sbjct: 856 AAGLSARGIPNSISI 870



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>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)|
          Length = 865

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = -2

Query: 297 AEGLSARGIPNSISI 253
           +EGL+ RGIPNSISI
Sbjct: 851 SEGLTCRGIPNSISI 865



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>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (Motch B) [Contains: Notch 2 extracellular
           truncation; Notch 2 intracellular domain]
          Length = 2470

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -2

Query: 180 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 43
           C+C        C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 704 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGVNCEVDK 756



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>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch|
           2) (hN2) [Contains: Notch 2 extracellular truncation;
           Notch 2 intracellular domain]
          Length = 2471

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 7/53 (13%)
 Frame = -2

Query: 180 CVCV-------CDRELCRCMNN*GNKGACTTGLIGMRKLSSAGYRSMHRRVQK 43
           C+C        C  ++  C++N    G CT GL G + L  AG+  ++  V K
Sbjct: 706 CICPEGPHHPSCYSQVNECLSNPCIHGNCTGGLSGYKCLCDAGWVGINCEVDK 758



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>CB024_HUMAN (Q9BV87) Protein C2orf24|
          Length = 410

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
 Frame = -2

Query: 264 SISI*SEHVRRRDLMLLCYPCLLTPELACVCVCDRELC-----RCMNN*GNKGACTTGLI 100
           ++++ S  V  + L L C P    P+L     C  E C     +C+ +  N  +C  G +
Sbjct: 244 ALAVASVAVIHQSLGLSCTPTPGPPDLGLTSRCLLEPCIPSVPQCLPSPANVSSCLEGSM 303

Query: 99  GMRKL 85
           G+R L
Sbjct: 304 GLRSL 308



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>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)|
          Length = 866

 Score = 27.7 bits (60), Expect = 7.8
 Identities = 12/14 (85%), Positives = 13/14 (92%)
 Frame = -2

Query: 294 EGLSARGIPNSISI 253
           EGL+ RGIPNSISI
Sbjct: 853 EGLTCRGIPNSISI 866


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,866,989
Number of Sequences: 219361
Number of extensions: 784407
Number of successful extensions: 1979
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1917
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1977
length of database: 80,573,946
effective HSP length: 74
effective length of database: 64,341,232
effective search space used: 1544189568
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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