ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30f11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, ... 270 2e-69
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 68 2e-08
3emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2 68 2e-08
4gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom... 68 2e-08
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 68 2e-08
6dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clon... 68 2e-08
7gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full ... 66 7e-08
8ref|XM_469655.1| Oryza sativa (japonica cultivar-group), mRNA 62 1e-06
9gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome... 46 0.063
10dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.063
11gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partia... 46 0.063
12ref|XM_464447.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.25
13dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.25
14dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.25
15dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.25
16dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.25
17ref|XM_483279.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.99
18emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, comple... 42 0.99
19emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 i... 42 0.99
20dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.99
21dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.99
22dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.99
23dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.99
24gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA,... 42 0.99
25gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA,... 42 0.99
26dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2... 42 0.99
27gb|AY110522.1| Zea mays CL4677_2 mRNA sequence 40 3.9
28gb|AY104322.1| Zea mays PCO093659 mRNA sequence 40 3.9 
>gb|L37358.1|BLYLOXC Hordeum vulgare lipoxygenase 2 (LoxC) mRNA, complete cds
          Length = 2910

 Score =  270 bits (136), Expect = 2e-69
 Identities = 149/153 (97%), Gaps = 4/153 (2%)
 Strand = Plus / Minus

                                                                        
Query: 16   ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 75
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2896 ttcattattgggcaaaacaagggattttttctgcacacgacgatgcattgaccggtagcc 2837

                                                                        
Query: 76   agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcaccc----ttattgc 131
            |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 2836 agctgagctgagcttccgcatgccgatcagacccgtcgtgcacgcacccttatttattgc 2777

                                             
Query: 132  cttaattattcatgcaccggcacaactctctgt 164
            |||||||||||||||||||||||||||||||||
Sbjct: 2776 cttaattattcatgcaccggcacaactctctgt 2744



 Score =  210 bits (106), Expect = 2e-51
 Identities = 115/118 (97%)
 Strand = Plus / Minus

                                                                        
Query: 181  agctagctccggtgtaagcaagcaaggatagcacaaaagcatgaggtctcgacgacggac 240
            ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||
Sbjct: 2727 agctagctccggtgtaagcaagcaaggatagcacaaaggcatgaggtctccacgacggac 2668

                                                                      
Query: 241  gtgctcagatcagatggatatgctgttcgggatgcccctggcggagagcccctcggcc 298
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 2667 gtgctcagatcagatggatatgctgttcgggatgcccctggcggtgagcccctcggcc 2610
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                          
Query: 247      agatcagatggatatgctgttcgggatgcccctggcggagag 288
                |||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 30026452 agatcagatggagatgctgttggggatgcccctggcggagag 30026411
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>emb|X64396.1|OSLRNA O.sativa mRNA for lipoxygenase L-2
          Length = 2830

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                      
Query: 247  agatcagatggatatgctgttcgggatgcccctggcggagag 288
            |||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 2698 agatcagatggagatgctgttggggatgcccctggcggagag 2657
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>gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
             sequence
          Length = 155106

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                       
Query: 247   agatcagatggatatgctgttcgggatgcccctggcggagag 288
             |||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 81299 agatcagatggagatgctgttggggatgcccctggcggagag 81340
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                          
Query: 247      agatcagatggatatgctgttcgggatgcccctggcggagag 288
                |||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 30117874 agatcagatggagatgctgttggggatgcccctggcggagag 30117833
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>dbj|AK073529.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033046E17, full
            insert sequence
          Length = 2928

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                      
Query: 247  agatcagatggatatgctgttcgggatgcccctggcggagag 288
            |||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 2731 agatcagatggagatgctgttggggatgcccctggcggagag 2690
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>gb|BT009097.1| Triticum aestivum clone wkm2c.pk005.n2:fis, full insert mRNA
           sequence
          Length = 1129

 Score = 65.9 bits (33), Expect = 7e-08
 Identities = 45/49 (91%)
 Strand = Plus / Minus

                                                            
Query: 250 tcagatggatatgctgttcgggatgcccctggcggagagcccctcggcc 298
           ||||||||| |||||||| |||||||||||||| | |||||||||||||
Sbjct: 906 tcagatggagatgctgttggggatgcccctggccgtgagcccctcggcc 858



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                              
Query: 9    catcgacttcattattgggcaaaacaagggattttttctgcacacgacga 58
            ||||||||| |||||||||||||  |||||| |||||||| |||||||||
Sbjct: 1099 catcgactttattattgggcaaatgaagggaatttttctgtacacgacga 1050



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 42/46 (91%), Gaps = 1/46 (2%)
 Strand = Plus / Minus

                                                          
Query: 91   ccgcatgccgatcagacccgtcgtgcacgcac-ccttattgcctta 135
            ||||||||||||| |||||||||||||| ||| | |||||||||||
Sbjct: 1045 ccgcatgccgatcggacccgtcgtgcacacacgcattattgcctta 1000
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>ref|XM_469655.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2613

 Score = 61.9 bits (31), Expect = 1e-06
 Identities = 37/39 (94%)
 Strand = Plus / Minus

                                                   
Query: 250  tcagatggatatgctgttcgggatgcccctggcggagag 288
            ||||||||| |||||||| ||||||||||||||||||||
Sbjct: 2613 tcagatggagatgctgttggggatgcccctggcggagag 2575
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>gb|AC137004.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0615D12,
              complete sequence
          Length = 155402

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 123    ccttattgccttaattattcatg 145
              |||||||||||||||||||||||
Sbjct: 136193 ccttattgccttaattattcatg 136215



 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 123   ccttattgccttaattattcatg 145
             |||||||||||||||||||||||
Sbjct: 94214 ccttattgccttaattattcatg 94236
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 123      ccttattgccttaattattcatg 145
                |||||||||||||||||||||||
Sbjct: 21745017 ccttattgccttaattattcatg 21745039



 Score = 46.1 bits (23), Expect = 0.063
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 123      ccttattgccttaattattcatg 145
                |||||||||||||||||||||||
Sbjct: 21703038 ccttattgccttaattattcatg 21703060
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>gb|U32428.1|TAU32428 Triticum aestivum lipoxygenase mRNA, partial cds
          Length = 1814

 Score = 46.1 bits (23), Expect = 0.063
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 248  gatcagatggatatgctgttcgggatgcccctggc 282
            ||||||||||| |||||||| ||||||||| ||||
Sbjct: 1558 gatcagatggagatgctgttggggatgcccttggc 1524
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>ref|XM_464447.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3123

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 250  tcagatggatatgctgttcgggatgcccct 279
            ||||||||| |||||||| |||||||||||
Sbjct: 2881 tcagatggagatgctgtttgggatgcccct 2852
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                             
Query: 250     tcagatggatatgctgttcgggatgcccct 279
               ||||||||| |||||||| |||||||||||
Sbjct: 5276963 tcagatggagatgctgtttgggatgcccct 5276992
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>dbj|AP004184.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
            clone:OJ1225_F07
          Length = 142772

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                          
Query: 250  tcagatggatatgctgttcgggatgcccct 279
            ||||||||| |||||||| |||||||||||
Sbjct: 3266 tcagatggagatgctgtttgggatgcccct 3295
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>dbj|AK071915.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013074B03, full
            insert sequence
          Length = 3160

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 250  tcagatggatatgctgttcgggatgcccct 279
            ||||||||| |||||||| |||||||||||
Sbjct: 2880 tcagatggagatgctgtttgggatgcccct 2851
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>dbj|AK061610.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-B01, full
            insert sequence
          Length = 2250

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 250  tcagatggatatgctgttcgggatgcccct 279
            ||||||||| |||||||| |||||||||||
Sbjct: 2042 tcagatggagatgctgtttgggatgcccct 2013
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>ref|XM_483279.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3198

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 249  atcagatggatatgctgttcgggatgccc 277
            ||||||||||| ||||||| |||||||||
Sbjct: 2978 atcagatggatgtgctgttggggatgccc 2950
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>emb|Z82288.2|CEZK896 Caenorhabditis elegans Cosmid ZK896, complete sequence
          Length = 37711

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 30    aaacaagggattttttctgca 50
             |||||||||||||||||||||
Sbjct: 32565 aaacaagggattttttctgca 32585
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>emb|BX294385.17| Zebrafish DNA sequence from clone CH211-197E8 in linkage group 24,
             complete sequence
          Length = 155584

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 27    gcaaaacaagggattttttct 47
             |||||||||||||||||||||
Sbjct: 39634 gcaaaacaagggattttttct 39614
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                             
Query: 249      atcagatggatatgctgttcgggatgccc 277
                ||||||||||| ||||||| |||||||||
Sbjct: 25242576 atcagatggatgtgctgttggggatgccc 25242548



 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 249      atcagatggatatgctgttcgggatgccc 277
                ||||||||||| ||||||| |||||||||
Sbjct: 25209453 atcagatggatgtgctgttggggatgccc 25209481
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>dbj|AP005816.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:B1168A08
          Length = 138135

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 249    atcagatggatatgctgttcgggatgccc 277
              ||||||||||| ||||||| |||||||||
Sbjct: 107699 atcagatggatgtgctgttggggatgccc 107671



 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 249   atcagatggatatgctgttcgggatgccc 277
             ||||||||||| ||||||| |||||||||
Sbjct: 74576 atcagatggatgtgctgttggggatgccc 74604
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>dbj|AP006049.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0016N23
          Length = 147336

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 249   atcagatggatatgctgttcgggatgccc 277
             ||||||||||| ||||||| |||||||||
Sbjct: 17761 atcagatggatgtgctgttggggatgccc 17733
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>dbj|AK066825.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075A10, full
            insert sequence
          Length = 3196

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 249  atcagatggatatgctgttcgggatgccc 277
            ||||||||||| ||||||| |||||||||
Sbjct: 2976 atcagatggatgtgctgttggggatgccc 2948
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>gb|AF095896.1|AF095896 Oryza sativa lipoxygenase (CM-LOX2) mRNA, partial cds
          Length = 2232

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 249  atcagatggatatgctgttcgggatgccc 277
            ||||||||||| ||||||| |||||||||
Sbjct: 2053 atcagatggatgtgctgttggggatgccc 2025
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>gb|AF095895.1|AF095895 Oryza sativa lipoxygenase (CM-LOX1) mRNA, partial cds
          Length = 2664

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 249  atcagatggatatgctgttcgggatgccc 277
            ||||||||||| ||||||| |||||||||
Sbjct: 2461 atcagatggatgtgctgttggggatgccc 2433
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>dbj|D14000.1|RICL2OP Oryza sativa (japonica cultivar-group) lox2osPil mRNA for
            lipoxygenase, complete cds
          Length = 3007

 Score = 42.1 bits (21), Expect = 0.99
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 249  atcagatggatatgctgttcgggatgccc 277
            ||||||||||| ||||||| |||||||||
Sbjct: 2891 atcagatggatgtgctgttggggatgccc 2863
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>gb|AY110522.1| Zea mays CL4677_2 mRNA sequence
          Length = 1304

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                           
Query: 248 gatcagatggatatgctgttcgggatgcccct 279
           ||||||||||| |||||| | |||||||||||
Sbjct: 132 gatcagatggagatgctgctggggatgcccct 163
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>gb|AY104322.1| Zea mays PCO093659 mRNA sequence
          Length = 1439

 Score = 40.1 bits (20), Expect = 3.9
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 248  gatcagatggatatgctgttcgggatgcccct 279
            ||||||||||| |||||| | |||||||||||
Sbjct: 1216 gatcagatggagatgctgctggggatgcccct 1185


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,723,932
Number of Sequences: 3902068
Number of extensions: 1723932
Number of successful extensions: 30413
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 30319
Number of HSP's gapped (non-prelim): 93
length of query: 298
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 276
effective length of database: 17,147,199,772
effective search space: 4732627137072
effective search space used: 4732627137072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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