Clone Name | rbastl30f10 |
---|---|
Clone Library Name | barley_pub |
>emb|AL844869.5| Mouse DNA sequence from clone RP23-437K18 on chromosome X, complete sequence Length = 207432 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 atatacattcattcagcaata 118 ||||||||||||||||||||| Sbjct: 25844 atatacattcattcagcaata 25864
>ref|XM_954827.1| Neurospora crassa OR74A hypothetical protein (NCU02276.1) partial mRNA Length = 3519 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 gaggcgactttgcagaggaa 261 |||||||||||||||||||| Sbjct: 2831 gaggcgactttgcagaggaa 2850
>ref|XM_331051.1| Neurospora crassa OR74A hypothetical protein (NCU02276.1) partial mRNA Length = 3519 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 gaggcgactttgcagaggaa 261 |||||||||||||||||||| Sbjct: 2831 gaggcgactttgcagaggaa 2850
>emb|CR536614.5| Zebrafish DNA sequence from clone CH211-154E6 in linkage group 17, complete sequence Length = 155951 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 93 gactgatatacattcattca 112 |||||||||||||||||||| Sbjct: 96565 gactgatatacattcattca 96584
>emb|AL163300.2|HS21C100 Homo sapiens chromosome 21 segment HS21C100 Length = 340000 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 agaaagctgagacggcgcag 26 |||||||||||||||||||| Sbjct: 86329 agaaagctgagacggcgcag 86348
>emb|AL358134.11| Human DNA sequence from clone RP11-306O13 on chromosome 6, complete sequence Length = 144828 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 38 aattgattttacaactcatacaaagctc 65 ||||||||||| |||||||||| ||||| Sbjct: 47789 aattgattttagaactcatacagagctc 47816
>emb|AL136322.24| Human DNA sequence from clone RP11-75C23 on chromosome 1q31.2-32.1 Contains part of the CRB1 gene for crumbs homolog 1 (Drosophila), complete sequence Length = 55954 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 gaacaaaattcaattgattttaca 50 ||||||||||||||| |||||||| Sbjct: 19440 gaacaaaattcaattcattttaca 19463
>emb|AL121896.11|HSA287B20 Human DNA sequence from clone RP11-287B20 on chromosome 20 Contains part of the gene for KIAA1272 for a protein similar to rat tulip proteins 1 and 2, complete sequence Length = 168545 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 atatacattcattcagcaat 117 |||||||||||||||||||| Sbjct: 45473 atatacattcattcagcaat 45454
>emb|BX908789.1| Neurospora crassa DNA linkage group VII BAC clone B13D24 Length = 107482 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 gaggcgactttgcagaggaa 261 |||||||||||||||||||| Sbjct: 16886 gaggcgactttgcagaggaa 16905
>emb|AL954250.1| Pan troglodytes chromosome 22 clone RP43-013I15 map 22q22.3, complete sequence Length = 192447 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 agaaagctgagacggcgcag 26 |||||||||||||||||||| Sbjct: 126090 agaaagctgagacggcgcag 126109
>emb|AL954249.1| Pan troglodytes chromosome 22 clone PTB-105M10 map 22q22.3, complete sequence Length = 182974 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 agaaagctgagacggcgcag 26 |||||||||||||||||||| Sbjct: 179711 agaaagctgagacggcgcag 179730
>gb|AC027654.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-219K14, complete sequence Length = 223678 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 251 ttgcagaggaagtcatggaaggag 274 ||||||||||||||| |||||||| Sbjct: 214779 ttgcagaggaagtcaaggaaggag 214756
>gb|AC073834.6| Homo sapiens BAC clone RP11-250N10 from 2, complete sequence Length = 172415 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 gaccacccagttgttcttcc 167 |||||||||||||||||||| Sbjct: 77514 gaccacccagttgttcttcc 77533
>gb|AC008170.2| Homo sapiens BAC clone RP11-257N21 from 2, complete sequence Length = 192341 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 189 agtgctgaaattcagccagt 208 |||||||||||||||||||| Sbjct: 31540 agtgctgaaattcagccagt 31521
>dbj|AP006272.1| Pan troglodytes genomic DNA, BAC clone: RPCI43-100O24, chromosome 22, complete sequence Length = 175178 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 agaaagctgagacggcgcag 26 |||||||||||||||||||| Sbjct: 149021 agaaagctgagacggcgcag 149040
>gb|AC149887.2| Xenopus tropicalis clone ISB-146F11, complete sequence Length = 91514 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 188 cagtgctgaaattcagccagtgtg 211 ||||||| |||||||||||||||| Sbjct: 4714 cagtgcttaaattcagccagtgtg 4691
>gb|AC172026.3| Gallus gallus BAC clone CH261-126J23 from chromosome ul, complete sequence Length = 179661 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 190 gtgctgaaattcagccagtg 209 |||||||||||||||||||| Sbjct: 172631 gtgctgaaattcagccagtg 172612
>emb|AL773604.1|HS225L15 Homo sapiens chromosome 21 from PAC RP1-225L15, map 21q22.3 Length = 146350 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 agaaagctgagacggcgcag 26 |||||||||||||||||||| Sbjct: 29961 agaaagctgagacggcgcag 29980
>emb|AL117258.4|CNS01DRI Human chromosome 14 DNA sequence BAC R-244E17 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 157827 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 98 atatacattcattcagcaat 117 |||||||||||||||||||| Sbjct: 47993 atatacattcattcagcaat 48012
>dbj|AP001068.1| Homo sapiens genomic DNA, chromosome 21, clone:KB877C8, MX1-D21S171 region, complete sequence Length = 120832 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 7 agaaagctgagacggcgcag 26 |||||||||||||||||||| Sbjct: 91087 agaaagctgagacggcgcag 91106 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,486,181 Number of Sequences: 3902068 Number of extensions: 3486181 Number of successful extensions: 57881 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57850 Number of HSP's gapped (non-prelim): 31 length of query: 364 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 342 effective length of database: 17,147,199,772 effective search space: 5864342322024 effective search space used: 5864342322024 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)