ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL844869.5| Mouse DNA sequence from clone RP23-437K18 on chr... 42 1.2
2ref|XM_954827.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.8
3ref|XM_331051.1| Neurospora crassa OR74A hypothetical protein (N... 40 4.8
4emb|CR536614.5| Zebrafish DNA sequence from clone CH211-154E6 in... 40 4.8
5emb|AL163300.2|HS21C100 Homo sapiens chromosome 21 segment HS21C100 40 4.8
6emb|AL358134.11| Human DNA sequence from clone RP11-306O13 on ch... 40 4.8
7emb|AL136322.24| Human DNA sequence from clone RP11-75C23 on chr... 40 4.8
8emb|AL121896.11|HSA287B20 Human DNA sequence from clone RP11-287... 40 4.8
9emb|BX908789.1| Neurospora crassa DNA linkage group VII BAC clon... 40 4.8
10emb|AL954250.1| Pan troglodytes chromosome 22 clone RP43-013I15 ... 40 4.8
11emb|AL954249.1| Pan troglodytes chromosome 22 clone PTB-105M10 m... 40 4.8
12gb|AC027654.3| Mus musculus strain C57BL6/J chromosome 6 clone R... 40 4.8
13gb|AC073834.6| Homo sapiens BAC clone RP11-250N10 from 2, comple... 40 4.8
14gb|AC008170.2| Homo sapiens BAC clone RP11-257N21 from 2, comple... 40 4.8
15dbj|AP006272.1| Pan troglodytes genomic DNA, BAC clone: RPCI43-1... 40 4.8
16gb|AC149887.2| Xenopus tropicalis clone ISB-146F11, complete seq... 40 4.8
17gb|AC172026.3| Gallus gallus BAC clone CH261-126J23 from chromos... 40 4.8
18emb|AL773604.1|HS225L15 Homo sapiens chromosome 21 from PAC RP1-... 40 4.8
19emb|AL117258.4|CNS01DRI Human chromosome 14 DNA sequence BAC R-2... 40 4.8
20dbj|AP001068.1| Homo sapiens genomic DNA, chromosome 21, clone:K... 40 4.8

>emb|AL844869.5| Mouse DNA sequence from clone RP23-437K18 on chromosome X, complete
             sequence
          Length = 207432

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 98    atatacattcattcagcaata 118
             |||||||||||||||||||||
Sbjct: 25844 atatacattcattcagcaata 25864



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>ref|XM_954827.1| Neurospora crassa OR74A hypothetical protein (NCU02276.1) partial
            mRNA
          Length = 3519

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  gaggcgactttgcagaggaa 261
            ||||||||||||||||||||
Sbjct: 2831 gaggcgactttgcagaggaa 2850



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>ref|XM_331051.1| Neurospora crassa OR74A hypothetical protein (NCU02276.1) partial
            mRNA
          Length = 3519

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  gaggcgactttgcagaggaa 261
            ||||||||||||||||||||
Sbjct: 2831 gaggcgactttgcagaggaa 2850



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>emb|CR536614.5| Zebrafish DNA sequence from clone CH211-154E6 in linkage group 17,
             complete sequence
          Length = 155951

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 93    gactgatatacattcattca 112
             ||||||||||||||||||||
Sbjct: 96565 gactgatatacattcattca 96584



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>emb|AL163300.2|HS21C100 Homo sapiens chromosome 21 segment HS21C100
          Length = 340000

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     agaaagctgagacggcgcag 26
             ||||||||||||||||||||
Sbjct: 86329 agaaagctgagacggcgcag 86348



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>emb|AL358134.11| Human DNA sequence from clone RP11-306O13 on chromosome 6, complete
             sequence
          Length = 144828

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 38    aattgattttacaactcatacaaagctc 65
             ||||||||||| |||||||||| |||||
Sbjct: 47789 aattgattttagaactcatacagagctc 47816



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>emb|AL136322.24| Human DNA sequence from clone RP11-75C23 on chromosome 1q31.2-32.1
             Contains part of the CRB1 gene for crumbs homolog 1
             (Drosophila), complete sequence
          Length = 55954

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 27    gaacaaaattcaattgattttaca 50
             ||||||||||||||| ||||||||
Sbjct: 19440 gaacaaaattcaattcattttaca 19463



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>emb|AL121896.11|HSA287B20 Human DNA sequence from clone RP11-287B20 on chromosome 20 Contains
             part of the gene for KIAA1272 for a protein similar to rat
             tulip proteins 1 and 2, complete sequence
          Length = 168545

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    atatacattcattcagcaat 117
             ||||||||||||||||||||
Sbjct: 45473 atatacattcattcagcaat 45454



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>emb|BX908789.1| Neurospora crassa DNA linkage group VII BAC clone B13D24
          Length = 107482

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 242   gaggcgactttgcagaggaa 261
             ||||||||||||||||||||
Sbjct: 16886 gaggcgactttgcagaggaa 16905



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>emb|AL954250.1| Pan troglodytes chromosome 22 clone RP43-013I15 map 22q22.3, complete
              sequence
          Length = 192447

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      agaaagctgagacggcgcag 26
              ||||||||||||||||||||
Sbjct: 126090 agaaagctgagacggcgcag 126109



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>emb|AL954249.1| Pan troglodytes chromosome 22 clone PTB-105M10 map 22q22.3, complete
              sequence
          Length = 182974

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      agaaagctgagacggcgcag 26
              ||||||||||||||||||||
Sbjct: 179711 agaaagctgagacggcgcag 179730



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>gb|AC027654.3| Mus musculus strain C57BL6/J chromosome 6 clone RP23-219K14, complete
              sequence
          Length = 223678

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 251    ttgcagaggaagtcatggaaggag 274
              ||||||||||||||| ||||||||
Sbjct: 214779 ttgcagaggaagtcaaggaaggag 214756



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>gb|AC073834.6| Homo sapiens BAC clone RP11-250N10 from 2, complete sequence
          Length = 172415

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 148   gaccacccagttgttcttcc 167
             ||||||||||||||||||||
Sbjct: 77514 gaccacccagttgttcttcc 77533



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>gb|AC008170.2| Homo sapiens BAC clone RP11-257N21 from 2, complete sequence
          Length = 192341

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   agtgctgaaattcagccagt 208
             ||||||||||||||||||||
Sbjct: 31540 agtgctgaaattcagccagt 31521



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>dbj|AP006272.1| Pan troglodytes genomic DNA, BAC clone: RPCI43-100O24, chromosome 22,
              complete sequence
          Length = 175178

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 7      agaaagctgagacggcgcag 26
              ||||||||||||||||||||
Sbjct: 149021 agaaagctgagacggcgcag 149040



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>gb|AC149887.2| Xenopus tropicalis clone ISB-146F11, complete sequence
          Length = 91514

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 188  cagtgctgaaattcagccagtgtg 211
            ||||||| ||||||||||||||||
Sbjct: 4714 cagtgcttaaattcagccagtgtg 4691



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>gb|AC172026.3| Gallus gallus BAC clone CH261-126J23 from chromosome ul, complete
              sequence
          Length = 179661

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 190    gtgctgaaattcagccagtg 209
              ||||||||||||||||||||
Sbjct: 172631 gtgctgaaattcagccagtg 172612



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>emb|AL773604.1|HS225L15 Homo sapiens chromosome 21 from PAC RP1-225L15, map 21q22.3
          Length = 146350

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     agaaagctgagacggcgcag 26
             ||||||||||||||||||||
Sbjct: 29961 agaaagctgagacggcgcag 29980



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>emb|AL117258.4|CNS01DRI Human chromosome 14 DNA sequence BAC R-244E17 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 157827

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 98    atatacattcattcagcaat 117
             ||||||||||||||||||||
Sbjct: 47993 atatacattcattcagcaat 48012



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>dbj|AP001068.1| Homo sapiens genomic DNA, chromosome 21, clone:KB877C8, MX1-D21S171
             region, complete sequence
          Length = 120832

 Score = 40.1 bits (20), Expect = 4.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     agaaagctgagacggcgcag 26
             ||||||||||||||||||||
Sbjct: 91087 agaaagctgagacggcgcag 91106


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,486,181
Number of Sequences: 3902068
Number of extensions: 3486181
Number of successful extensions: 57881
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 57850
Number of HSP's gapped (non-prelim): 31
length of query: 364
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 342
effective length of database: 17,147,199,772
effective search space: 5864342322024
effective search space used: 5864342322024
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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