ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbastl30f08 |
|---|---|
| Clone Library Name | barley_pub |
>MSRA_LACSA (Q9SEC2) Peptide methionine sulfoxide reductase (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 259 Score = 77.8 bits (190), Expect = 6e-15 Identities = 33/34 (97%), Positives = 34/34 (100%) Frame = -3 Query: 395 RAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 294 RAEEYHQQYLAKGGRFGF+QSTEKGCNDPIRCYG Sbjct: 226 RAEEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 259
>MSRA_BRANA (P54151) Peptide methionine sulfoxide reductase (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 257 Score = 68.6 bits (166), Expect = 4e-12 Identities = 29/34 (85%), Positives = 29/34 (85%) Frame = -3 Query: 395 RAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 294 RAE YHQQYLAKGGR G QS EKGCNDPIRCYG Sbjct: 224 RAENYHQQYLAKGGRMGLSQSAEKGCNDPIRCYG 257
>MSRA_ARATH (P54150) Peptide methionine sulfoxide reductase (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 258 Score = 67.0 bits (162), Expect = 1e-11 Identities = 28/34 (82%), Positives = 29/34 (85%) Frame = -3 Query: 395 RAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 294 RAE YHQQYLAKGGR G +QS EKGC DPIRCYG Sbjct: 225 RAENYHQQYLAKGGRMGLRQSAEKGCKDPIRCYG 258
>MSRA_LYCES (P54153) Peptide methionine sulfoxide reductase (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) (Fruit-ripening protein E4) (Fragment) Length = 196 Score = 63.5 bits (153), Expect = 1e-10 Identities = 28/34 (82%), Positives = 28/34 (82%) Frame = -3 Query: 395 RAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 294 RAEEYHQQYL KGG G KQS KGCNDPIRCYG Sbjct: 163 RAEEYHQQYLEKGGGRGCKQSAAKGCNDPIRCYG 196
>MSRA_FRAAN (P54152) Peptide methionine sulfoxide reductase (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) (Fruit-ripening protein E4) Length = 191 Score = 63.2 bits (152), Expect = 1e-10 Identities = 27/34 (79%), Positives = 29/34 (85%) Frame = -3 Query: 395 RAEEYHQQYLAKGGRFGFKQSTEKGCNDPIRCYG 294 RAEEYHQQYL KGG G KQS +KGCNDPI+CYG Sbjct: 158 RAEEYHQQYLEKGGGNGNKQSAQKGCNDPIKCYG 191
>CZF1_CANAL (P28875) Zinc finger protein 1| Length = 388 Score = 30.4 bits (67), Expect = 1.1 Identities = 13/38 (34%), Positives = 22/38 (57%) Frame = -2 Query: 306 PLLRMNKPGDLTCKEAHKQQCYSRERCLNNGGCQLNFT 193 P+ + ++ G LTC++ K+ C +R RC +LN T Sbjct: 309 PITKRSRMGCLTCRQRKKRCCETRPRCTECTRLRLNCT 346
>NCAP_IBVDE (Q9J4B0) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 29.6 bits (65), Expect = 1.8 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 393 GGRVPPAVPCEGRSLWLQAVHGEGLQRPHP 304 GG PP V G + W QA+ + L P P Sbjct: 20 GGPKPPKVGSSGNASWFQAIKAKKLNSPQP 49
>NCAP_IBVSA (Q8JMI6) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 393 GGRVPPAVPCEGRSLWLQAVHGEGLQRPHP 304 GG PP V G + W QA+ + L P P Sbjct: 20 GGPRPPKVGSSGNASWFQAIKAKKLNSPQP 49
>NCAP_IBVG (P32923) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 29.3 bits (64), Expect = 2.4 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 393 GGRVPPAVPCEGRSLWLQAVHGEGLQRPHP 304 GG PP V G + W QA+ + L P P Sbjct: 20 GGPRPPKVGSSGNASWFQAIKAKKLNSPQP 49
>NCAP_IBVBU (P69598) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 393 GGRVPPAVPCEGRSLWLQAVHGEGLQRPHP 304 GG PP V G + W QA+ + L P P Sbjct: 20 GGPKPPKVGSSGNASWFQAIKAKKLNTPPP 49
>NCAP_IBVBC (P69597) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 393 GGRVPPAVPCEGRSLWLQAVHGEGLQRPHP 304 GG PP V G + W QA+ + L P P Sbjct: 20 GGPKPPKVGSSGNASWFQAIKAKKLNTPPP 49
>NCAP_IBVB (P69596) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 393 GGRVPPAVPCEGRSLWLQAVHGEGLQRPHP 304 GG PP V G + W QA+ + L P P Sbjct: 20 GGPKPPKVGSSGNASWFQAIKAKKLNTPPP 49
>NCAP_CVTMI (Q9PZ50) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 393 GGRVPPAVPCEGRSLWLQAVHGEGLQRPHP 304 GG PP V G + W QA+ + L P P Sbjct: 20 GGPKPPKVGSSGNASWFQAIKAKKLNSPPP 49
>FA12_CAVPO (Q04962) Coagulation factor XII precursor (EC 3.4.21.38) (Hageman| factor) (HAF) [Contains: Coagulation factor XIIa heavy chain; Coagulation factor XIIa light chain] (Fragment) Length = 603 Score = 28.5 bits (62), Expect = 4.0 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -2 Query: 288 KPGDLTCKEAHKQQCYSRERCLNNGGC 208 K D CK+ H Q+C + CLN G C Sbjct: 163 KGPDAHCKQMHSQECQTNP-CLNGGRC 188
>NCAP_IBVVI (Q96598) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = -2 Query: 393 GGRVPPAVPCEGRSLWLQAVHGEGLQRPHP 304 GG PP + G + W QA+ + L P P Sbjct: 20 GGPKPPKIGSSGNASWFQAIKAKKLNVPQP 49
>NCAP_CVTNC (Q9PZ49) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = -2 Query: 393 GGRVPPAVPCEGRSLWLQAVHGEGLQRPHP 304 GG PP V G + W Q++ + L P P Sbjct: 20 GGPKPPKVGSSGNASWFQSIKAKKLNSPQP 49
>DNAJ_BUCBP (Q89AU7) Chaperone protein dnaJ| Length = 383 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/42 (33%), Positives = 23/42 (54%) Frame = -2 Query: 390 GRVPPAVPCEGRSLWLQAVHGEGLQRPHPLLRMNKPGDLTCK 265 G+V +PCE +S L + G G++ + N+ GDL C+ Sbjct: 293 GKVKLKIPCETQSGKLLRIRGRGVK---SIRNNNRQGDLLCR 331
>EPHB6_RAT (P0C0K7) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) Length = 1013 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/44 (36%), Positives = 19/44 (43%) Frame = -2 Query: 396 QGGRVPPAVPCEGRSLWLQAVHGEGLQRPHPLLRMNKPGDLTCK 265 Q G PP + C G W+ AV G Q H R GD C+ Sbjct: 270 QAGGSPPRLHCNGEGRWMVAVGGCRCQPGHQPAR----GDKLCQ 309
>EPHB6_MOUSE (O08644) Ephrin type-B receptor 6 precursor (Tyrosine-protein| kinase-defective receptor EPH-6) (MEP) Length = 1014 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/44 (36%), Positives = 19/44 (43%) Frame = -2 Query: 396 QGGRVPPAVPCEGRSLWLQAVHGEGLQRPHPLLRMNKPGDLTCK 265 Q G PP + C G W+ AV G Q H R GD C+ Sbjct: 271 QAGGSPPRLHCNGEGRWMVAVGGCRCQPGHQPAR----GDKLCQ 310
>NCAP_IBVM (Q82616) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/55 (29%), Positives = 23/55 (41%) Frame = -2 Query: 393 GGRVPPAVPCEGRSLWLQAVHGEGLQRPHPLLRMNKPGDLTCKEAHKQQCYSRER 229 GG PP V G + W QA+ L P P + D ++ +Q Y R + Sbjct: 20 GGPKPPKVGSSGNASWFQAIKANKLNIPPPKFEGSGVPDNENLKSSQQHGYWRRQ 74
>NCAP_IBVH1 (Q98WJ7) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 393 GGRVPPAVPCEGRSLWLQAVHGEGLQRPHP 304 GG PP V G + W QA+ + L P P Sbjct: 20 GGPKPPKVGSSGNASWFQALKAKKLNSPPP 49
>NCAP_IBVD1 (Q9J4A3) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/30 (40%), Positives = 15/30 (50%) Frame = -2 Query: 393 GGRVPPAVPCEGRSLWLQAVHGEGLQRPHP 304 GG PP V G + W QA+ + L P P Sbjct: 20 GGPKPPKVGSSGNASWFQALKAKKLNSPPP 49
>NCAP_CVTIN (Q9PZ51) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = -2 Query: 393 GGRVPPAVPCEGRSLWLQAVHGEGLQRPHP 304 GG PP V G W QA+ + L P P Sbjct: 20 GGPKPPKVGSSGSVSWFQAIKAKKLNSPQP 49
>YJ23_SCHPO (Q9USJ3) Hypothetical protein C4B3.03c in chromosome III precursor| Length = 679 Score = 27.7 bits (60), Expect = 6.9 Identities = 15/34 (44%), Positives = 22/34 (64%) Frame = +2 Query: 266 LQVRSPGLFIRSSGWGRCSPSPWTA*SQSDRPSQ 367 ++V+SP L S+G+G S SP S+SD PS+ Sbjct: 458 VKVKSPSLIQSSTGYGSMSQSP----SRSDLPSK 487
>DDH_CORGL (P04964) Meso-diaminopimelate D-dehydrogenase (EC 1.4.1.16)| Length = 320 Score = 27.7 bits (60), Expect = 6.9 Identities = 10/19 (52%), Positives = 14/19 (73%) Frame = -2 Query: 297 RMNKPGDLTCKEAHKQQCY 241 R + GDLT K+ HK+QC+ Sbjct: 180 RRGEAGDLTGKQTHKRQCF 198
>NCAP_IBVH5 (Q98Y32) Nucleocapsid protein (N structural protein) (NC)| Length = 409 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = -2 Query: 393 GGRVPPAVPCEGRSLWLQAVHGEGLQRPHP 304 GG PP V G W QA+ + L P P Sbjct: 20 GGPKPPKVGSSGNVSWFQAIKAKKLNSPPP 49
>MSRA_BRUSU (Q8FUZ0) Peptide methionine sulfoxide reductase msrA (EC 1.8.4.6)| (Protein-methionine-S-oxide reductase) (Peptide Met(O) reductase) Length = 218 Score = 27.3 bits (59), Expect = 9.0 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 2/31 (6%) Frame = -3 Query: 392 AEEYHQQYLAKG--GRFGFKQSTEKGCNDPI 306 AE+YHQQYLAK G G + T+ C P+ Sbjct: 187 AEDYHQQYLAKNPDGYCGLR-GTDVSCPIPL 216
>LIN12_CAEEL (P14585) Protein lin-12 precursor (Abnormal cell lineage protein| 12) Length = 1429 Score = 27.3 bits (59), Expect = 9.0 Identities = 10/19 (52%), Positives = 11/19 (57%) Frame = -2 Query: 264 EAHKQQCYSRERCLNNGGC 208 E K +C S CLNNG C Sbjct: 363 EQDKNECLSENMCLNNGTC 381
>ISPE_PROAC (Q6AAD6) 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC| 2.7.1.148) (CMK) (4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase) Length = 310 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = -2 Query: 396 QGGRVPPAVPCEGRSLWLQAVHGEGLQRPHPLLRMNKPG 280 +G R+ P + C GR W+ A +GL P R ++ G Sbjct: 159 RGDRLAPVI-CRGRHRWVFATSNQGLSTPAVYRRFDELG 196 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 54,619,597 Number of Sequences: 219361 Number of extensions: 1046594 Number of successful extensions: 2729 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 2635 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2729 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 1370455656 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
