ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl30f05 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 98.6 bits (244), Expect = 6e-21 Identities = 47/62 (75%), Positives = 51/62 (82%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 KRF +L IE +VV MN DP+LKNR GPAKFPYMLLYPNTSDH G A GLTA+GIPNSI Sbjct: 801 KRFSDRLVEIESKVVGMNHDPELKNRNGPAKFPYMLLYPNTSDHKGAAAGLTAKGIPNSI 860 Query: 261 SI 256 SI Sbjct: 861 SI 862
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 92.4 bits (228), Expect = 4e-19 Identities = 45/62 (72%), Positives = 48/62 (77%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 KRFGA+L IE +VVAMN DP KNR GP FPY LLYPNTSD G A GL+ARGIPNSI Sbjct: 809 KRFGARLTEIESRVVAMNKDPHRKNRVGPTNFPYTLLYPNTSDLKGDAAGLSARGIPNSI 868 Query: 261 SI 256 SI Sbjct: 869 SI 870
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 89.0 bits (219), Expect = 5e-18 Identities = 42/62 (67%), Positives = 49/62 (79%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 KRF +L IE +V+ MN DP LKNR GPA FPY L++PNTSD+ G AEG+TARGIPNSI Sbjct: 802 KRFSRQLVEIESKVLNMNKDPLLKNRVGPANFPYTLMFPNTSDNKGAAEGITARGIPNSI 861 Query: 261 SI 256 SI Sbjct: 862 SI 863
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 88.2 bits (217), Expect = 8e-18 Identities = 43/62 (69%), Positives = 49/62 (79%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 +RF +L IE +VV MN D LKNR GPA+FPYMLLYPNTSD TG A G+TA+GIPNSI Sbjct: 805 RRFSDRLVEIEGKVVGMNGDAGLKNRNGPAEFPYMLLYPNTSDVTGAAAGITAKGIPNSI 864 Query: 261 SI 256 SI Sbjct: 865 SI 866
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 79.3 bits (194), Expect = 4e-15 Identities = 40/63 (63%), Positives = 47/63 (74%), Gaps = 1/63 (1%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQ-AEGLTARGIPNS 265 KRFG++L IE ++ MN + LKNR GP K PYMLLYPNTSD T + +GLTA GIPNS Sbjct: 815 KRFGSRLVDIENRIKDMNGNSALKNRNGPVKMPYMLLYPNTSDVTKEKGQGLTAMGIPNS 874 Query: 264 ISI 256 ISI Sbjct: 875 ISI 877
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 73.6 bits (179), Expect = 2e-13 Identities = 38/62 (61%), Positives = 44/62 (70%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 KRFG KLE IEK+++ N D L+NR GPAK PY LLYP++ EGLT RGIPNSI Sbjct: 798 KRFGKKLEEIEKKLIEKNKDETLRNRYGPAKMPYTLLYPSSE------EGLTFRGIPNSI 851 Query: 261 SI 256 SI Sbjct: 852 SI 853
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 72.4 bits (176), Expect = 5e-13 Identities = 37/62 (59%), Positives = 43/62 (69%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 KRFG+KL GIE ++ A NSDP L+NRTGP + PY LL H EGLT +GIPNSI Sbjct: 809 KRFGSKLTGIEGKINARNSDPSLRNRTGPVQLPYTLL------HRSSEEGLTFKGIPNSI 862 Query: 261 SI 256 SI Sbjct: 863 SI 864
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 68.6 bits (166), Expect = 7e-12 Identities = 35/62 (56%), Positives = 42/62 (67%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 KRFG KL IE+++ N+D L+NR GP K PY LLYP++ EGLT RGIPNSI Sbjct: 811 KRFGKKLAEIEEKLTQRNNDESLRNRYGPVKMPYTLLYPSSE------EGLTCRGIPNSI 864 Query: 261 SI 256 SI Sbjct: 865 SI 866
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 67.8 bits (164), Expect = 1e-11 Identities = 34/62 (54%), Positives = 41/62 (66%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 KRFG KL+ IE++++ N D L+NR GP K PY +L P D EGLT RGIPNSI Sbjct: 806 KRFGQKLKEIEEKIMGRNKDSSLRNRNGPVKMPYTVLLPTCED-----EGLTFRGIPNSI 860 Query: 261 SI 256 SI Sbjct: 861 SI 862
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 66.6 bits (161), Expect = 3e-11 Identities = 34/62 (54%), Positives = 43/62 (69%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 K+FG KL IEK++ N+D +L+NR GP + PY LLYP++ EGLT RGIPNSI Sbjct: 806 KKFGNKLAEIEKKLTQRNNDEKLRNRHGPVEMPYTLLYPSSK------EGLTFRGIPNSI 859 Query: 261 SI 256 SI Sbjct: 860 SI 861
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 63.9 bits (154), Expect = 2e-10 Identities = 32/62 (51%), Positives = 42/62 (67%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 ++FG KL+ IE+++ N+D L NR GP + PY LL+PN +EGLT RGIPNSI Sbjct: 811 QKFGNKLKEIEEKLARKNNDQSLSNRLGPVQLPYTLLHPN-------SEGLTCRGIPNSI 863 Query: 261 SI 256 SI Sbjct: 864 SI 865
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 63.9 bits (154), Expect = 2e-10 Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 1/63 (1%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLK-NRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNS 265 ++FG KL+ IE+++V N+DP L+ NR GP + PY LLYP++ EGLT RGIPNS Sbjct: 783 QKFGNKLKEIEEKLVRRNNDPSLQGNRLGPVQLPYTLLYPSSE------EGLTFRGIPNS 836 Query: 264 ISI 256 ISI Sbjct: 837 ISI 839
>LOXB_PHAVU (P27481) Lipoxygenase (EC 1.13.11.12) (Fragment)| Length = 741 Score = 63.5 bits (153), Expect = 2e-10 Identities = 33/56 (58%), Positives = 39/56 (69%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGI 274 KRFG KL IEK++V N+D L+NRTGPAK PY LLYP++ EGLT RGI Sbjct: 692 KRFGKKLAEIEKKLVQKNNDETLRNRTGPAKMPYTLLYPSSE------EGLTFRGI 741
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 62.4 bits (150), Expect = 5e-10 Identities = 33/62 (53%), Positives = 41/62 (66%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 KRFG KL IE ++ N+D +L+NR GP + PY LL P++ EGLT RGIPNSI Sbjct: 802 KRFGNKLAQIENKLSERNNDEKLRNRCGPVQMPYTLLLPSSK------EGLTFRGIPNSI 855 Query: 261 SI 256 SI Sbjct: 856 SI 857
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 61.6 bits (148), Expect = 8e-10 Identities = 31/61 (50%), Positives = 38/61 (62%) Frame = -3 Query: 438 RFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSIS 259 RFG KL IEKQ++ N D L NR+GP PY LL+P + GLT +GIPNS+S Sbjct: 807 RFGKKLTDIEKQIIQRNGDNILTNRSGPVNAPYTLLFPTSEG------GLTGKGIPNSVS 860 Query: 258 I 256 I Sbjct: 861 I 861
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 61.2 bits (147), Expect = 1e-09 Identities = 30/62 (48%), Positives = 39/62 (62%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 +RFG L IE +++ MNS KNR+GP PY LL+P + EGLT +GIPNS+ Sbjct: 804 ERFGKMLSDIENRIMIMNSHKSWKNRSGPVNVPYTLLFPTSE------EGLTGKGIPNSV 857 Query: 261 SI 256 SI Sbjct: 858 SI 859
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 60.5 bits (145), Expect = 2e-09 Identities = 31/62 (50%), Positives = 41/62 (66%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 ++FG KL IE ++ N+DP L +R GP + PY LL+P++ EGLT RGIPNSI Sbjct: 809 QKFGNKLAEIEAKLTNKNNDPSLYHRVGPVQLPYTLLHPSSK------EGLTFRGIPNSI 862 Query: 261 SI 256 SI Sbjct: 863 SI 864
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 60.5 bits (145), Expect = 2e-09 Identities = 31/62 (50%), Positives = 39/62 (62%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 +RFG KL IEKQ++ N + L NRTGP PY LL+P + GLT +GIPNS+ Sbjct: 805 ERFGNKLTDIEKQIMQRNGNNILTNRTGPVNAPYTLLFPTSEG------GLTGKGIPNSV 858 Query: 261 SI 256 SI Sbjct: 859 SI 860
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 60.1 bits (144), Expect = 2e-09 Identities = 30/62 (48%), Positives = 40/62 (64%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 ++FG K++ IEK + N D LKNRTG K PY LL+P++ G+T RGIPNS+ Sbjct: 804 EKFGEKVKEIEKNIDERNDDETLKNRTGLVKMPYTLLFPSSEG------GVTGRGIPNSV 857 Query: 261 SI 256 SI Sbjct: 858 SI 859
>LOX5_ORYSA (Q7XV13) Putative lipoxygenase 5 (EC 1.13.11.12)| Length = 899 Score = 46.2 bits (108), Expect = 4e-05 Identities = 21/62 (33%), Positives = 35/62 (56%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 + F A + E+++ N+DP +NR G PY L+ P++ G+T RG+PNS+ Sbjct: 844 REFAADVRRAEEEIERRNADPSRRNRCGAGVLPYELMAPSS------GPGITCRGVPNSV 897 Query: 261 SI 256 +I Sbjct: 898 TI 899
>LOX23_HORVU (Q8GSM2) Lipoxygenase 2.3, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:3) Length = 896 Score = 44.7 bits (104), Expect = 1e-04 Identities = 25/62 (40%), Positives = 35/62 (56%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 ++F +L+ E + N++P+ KNR G PY LL P + G+T RGIPNSI Sbjct: 841 EKFSGRLKEAEGTIDMRNNNPENKNRCGAGIVPYELLKPFSE------PGVTGRGIPNSI 894 Query: 261 SI 256 SI Sbjct: 895 SI 896
>LOXC1_ORYSA (P38419) Lipoxygenase 7, chloroplast precursor (EC 1.13.11.12)| Length = 924 Score = 43.9 bits (102), Expect = 2e-04 Identities = 25/60 (41%), Positives = 32/60 (53%) Frame = -3 Query: 435 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 F A+L+ IE + N D +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 871 FAARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSD------SGVTGMGIPNSTSI 924
>LOXC2_ORYSA (Q84YK8) Probable lipoxygenase 8, chloroplast precursor (EC| 1.13.11.12) Length = 941 Score = 42.7 bits (99), Expect = 4e-04 Identities = 25/60 (41%), Positives = 32/60 (53%) Frame = -3 Query: 435 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 F A+L+ IE + N D +LKNR G PY L+ P + G+T GIPNS SI Sbjct: 888 FTARLKEIEGVIDGRNKDRKLKNRCGAGILPYQLMKPFSD------AGVTGMGIPNSTSI 941
>LOX6_ORYSA (Q8H016) Probable lipoxygenase 6 (EC 1.13.11.12)| Length = 918 Score = 42.7 bits (99), Expect = 4e-04 Identities = 24/60 (40%), Positives = 32/60 (53%) Frame = -3 Query: 435 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 F A + E+ + N+D KNR G PY LL P++ G+T RG+PNSISI Sbjct: 865 FAADVRRAEETIERRNADHGRKNRCGAGVLPYELLAPSS------PPGVTCRGVPNSISI 918
>LOX21_HORVU (P93184) Lipoxygenase 2.1, chloroplast precursor (EC 1.13.11.12)| (LOX-100) (LOX2:Hv:1) Length = 936 Score = 42.4 bits (98), Expect = 5e-04 Identities = 26/66 (39%), Positives = 33/66 (50%), Gaps = 4/66 (6%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTG----QAEGLTARGI 274 + F I +QV N+DP KNR G PY+LL P+ D T + + GI Sbjct: 871 EEFKESTRKIVEQVDEWNNDPDRKNRHGAGMVPYVLLRPSDGDPTDGDPTDEKMVMEMGI 930 Query: 273 PNSISI 256 PNSISI Sbjct: 931 PNSISI 936
>LOX22_HORVU (Q8GSM3) Lipoxygenase 2.2, chloroplast precursor (EC 1.13.11.12)| (LOX2:Hv:2) Length = 932 Score = 40.0 bits (92), Expect = 0.003 Identities = 24/60 (40%), Positives = 32/60 (53%) Frame = -3 Query: 435 FGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSISI 256 F K+ I +QV N D +NR G PY+LL P + + A+ + GIPNSISI Sbjct: 874 FQKKMRDIAEQVEEWNKDDSRRNRHGAGVVPYVLLRP-LNGNPMDAKTVMEMGIPNSISI 932
>LOXC_ARATH (P38418) Lipoxygenase, chloroplast precursor (EC 1.13.11.12)| Length = 896 Score = 39.7 bits (91), Expect = 0.003 Identities = 26/62 (41%), Positives = 34/62 (54%) Frame = -3 Query: 441 KRFGAKLEGIEKQVVAMNSDPQLKNRTGPAKFPYMLLYPNTSDHTGQAEGLTARGIPNSI 262 +RF KL+ +E + N + LKNR G Y LL P TS+H G+T G+P SI Sbjct: 841 ERFKGKLQYLEGVIDERNVNITLKNRAGAGVVKYELLKP-TSEH-----GVTGMGVPYSI 894 Query: 261 SI 256 SI Sbjct: 895 SI 896
>SYP_MYCTU (O05814) Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA| ligase) (ProRS) Length = 582 Score = 31.2 bits (69), Expect = 1.2 Identities = 20/40 (50%), Positives = 23/40 (57%) Frame = +1 Query: 235 TTDVLRSDGYAVRDAPGGEPLGLSRVVGGVWVEQHVWELG 354 T DVL DG VR G +G+SR+V V EQH ELG Sbjct: 438 TADVLGEDGKPVRLTMGSYGIGVSRLV-AVVAEQHHDELG 476
>SEPP1_PONPY (Q5R8W9) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -2 Query: 358 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 269 A P H A P L H +G HRQGHPE Sbjct: 231 APDAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>SEPP1_HUMAN (P49908) Selenoprotein P precursor (SeP)| Length = 381 Score = 30.4 bits (67), Expect = 2.0 Identities = 15/30 (50%), Positives = 16/30 (53%) Frame = -2 Query: 358 AGQVPIHAALPKHLRPHGTGRGAHRQGHPE 269 A P H A P L H +G HRQGHPE Sbjct: 231 APNAPTHPA-PPGLHHHHKHKGQHRQGHPE 259
>UD12_MOUSE (P70691) UDP-glucuronosyltransferase 1-2 precursor (EC 2.4.1.17)| (UDPGT) (UGT1*0) (UGT1-02) (UGT1.2) (UGT1A2) (Bilirubin specific) Length = 533 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/27 (55%), Positives = 18/27 (66%) Frame = +2 Query: 362 VRFLSCGSEFMATTCFSMPSSFAPNRL 442 +R LSCG E+ AT C PSS+ PN L Sbjct: 172 LRSLSCGIEYEATQC-PNPSSYIPNLL 197
>FOXJ3_MOUSE (Q8BUR3) Forkhead box protein J3| Length = 623 Score = 29.3 bits (64), Expect = 4.5 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 4/47 (8%) Frame = -2 Query: 382 PAAQEPHRAGQVPIHAALPKHLRPHGTGRG----AHRQGHPEQHIHL 254 P+ PHR +P H P+H PH H Q HP H H+ Sbjct: 380 PSPHTPHRPHGLPQHPQRPQHPAPHPQQHSQLQPPHSQ-HPPPHQHI 425
>FRIZ3_DROME (O77438) Protein frizzled-3 precursor (dFz3)| Length = 581 Score = 28.9 bits (63), Expect = 5.9 Identities = 24/72 (33%), Positives = 30/72 (41%), Gaps = 5/72 (6%) Frame = -3 Query: 339 MLLYPNTSDHTGQ--AEGLTARGIPNSISI*SEHVRR---RDLMLLCYPCLLTPELACVC 175 M PN + HT Q AE A+ +P S S R L LC P + P AC Sbjct: 55 MTALPNLAGHTNQLEAELQIAKLVPLIESGCSRRARFLLCSSLFPLCTPDVPRPVAACKL 114 Query: 174 VCDRELCRCMNN 139 +C+ CM N Sbjct: 115 LCETVRGECMEN 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,995,349 Number of Sequences: 219361 Number of extensions: 1295985 Number of successful extensions: 3566 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3421 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3536 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2618960580 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
