>RNT_SALTY (P66684) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T)|
          Length = 215

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = -3

Query: 289 LSAVAAATVQLAERAHLQGDRDVHGYHQEPDAGADTHPQWLAF 161
           L  +AA T+++ E+  L  D  +H +H EP AGA+  P+ LAF
Sbjct: 36  LLEIAAITLKMDEQGWLMPDMTLH-FHVEPFAGANLQPEALAF 77

>RNT_SALTI (P66685) Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T)|
          Length = 215

 Score = 34.3 bits (77), Expect = 0.16
 Identities = 18/43 (41%), Positives = 27/43 (62%)
 Frame = -3

Query: 289 LSAVAAATVQLAERAHLQGDRDVHGYHQEPDAGADTHPQWLAF 161
           L  +AA T+++ E+  L  D  +H +H EP AGA+  P+ LAF
Sbjct: 36  LLEIAAITLKMDEQGWLMPDMTLH-FHVEPFAGANLQPEALAF 77

>GSC_DROME (P54366) Homeobox protein goosecoid|
          Length = 419

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 33/114 (28%), Positives = 44/114 (38%), Gaps = 18/114 (15%)
 Frame = -3

Query: 430 PKSIAQRQRLRSPV-PVRVDFVVRSDHPNDTELHGEAVSPRGSGAHPR------------ 290
           P S +      SP+ P RV  +++  HP     H  A +  G  A P             
Sbjct: 162 PNSNSSSSAAASPIRPQRVPAMLQ--HPGLHLGHLAAAAASGFAASPSDFLVAYPNFYPN 219

Query: 289 -LSAVAAATVQLAE-RAHLQGDR---DVHGYHQEPDAGADTHPQWLAFMHGQQH 143
            + A A A V  A+ +AH+ G       HG+H     G   HP   A  HGQ H
Sbjct: 220 YMHAAAVAHVAAAQMQAHVSGAAAGLSGHGHHPHHPHGHPHHPHLGAHHHGQHH 273

>VP40_ILTVT (P23984) Capsid protein P40 [Contains: Capsid protein VP24|
           (Assemblin) (Protease) (EC 3.4.21.97); Capsid protein
           VP22A; C-terminal peptide]
          Length = 586

 Score = 30.8 bits (68), Expect = 1.8
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
 Frame = -3

Query: 418 AQRQRLRSPVPVRVDFVVRSDHPNDTELHGEAVSPRGSGAHPRLSAVAAATVQLAERAHL 239
           A+R   R PV    +F  RS         G  + PRG   HPRL +     +    R  L
Sbjct: 330 ARRDNDRRPVSPSREFSRRSRDSTHECSPGRDIWPRGFERHPRLESFMGPGMNHTYRPAL 389

Query: 238 QGDRDVHGY-----HQEPDAGADTHPQWLAFMHGQ 149
             D +  G      +Q P +    HP + +   GQ
Sbjct: 390 YEDPNFCGRFPYIPYQSPASTYPVHPNYYSSNFGQ 424

>HOLB_BUCAI (P57435) DNA polymerase III delta' subunit (EC 2.7.7.7)|
          Length = 326

 Score = 30.0 bits (66), Expect = 3.0
 Identities = 19/74 (25%), Positives = 36/74 (48%)
 Frame = +2

Query: 71  KPHTDIIVKFLSSYICIYK*QKKRMLLAMHER*PLGVGISASIWFLMIPMHISISLKMGT 250
           KP+ +I+ ++          QKK+   A+  + P G+G+S  IWF+   +     + + +
Sbjct: 9   KPYNNIVQQY----------QKKKAHHAILIKTPRGIGVSLLIWFISKWLLCLKPIGLNS 58

Query: 251 FCELHGCSRDSAES 292
             + HGC   SA +
Sbjct: 59  CDKCHGCKLMSANN 72

>SYI_DEIRA (Q9RUP8) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA|
           ligase) (IleRS)
          Length = 1078

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 212 IPMHISISLKMGTFCELHGCSRDSAE--SRMCATS 310
           +P+ IS+  K+G     HG SR+  E  +R+C TS
Sbjct: 94  LPVEISVEKKLGWLGRNHGASREELEEFNRLCRTS 128

>PRM2_HORSE (P15342) Sperm histone P2a (Protamine 2a) (ST2a)|
          Length = 62

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
 Frame = -2

Query: 344 YRTARRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSR-CAWVSSRTRCWR 189
           YR  RR   +PR+      +R R   R  RR C      R C  V  R RC R
Sbjct: 8   YRRYRRRCCSPRRLYRLRRRRYRSSRRRRRRPCRRRRHRRVCRRVRRRRRCCR 60

>RESA_PLAFN (P13831) Ring-infected erythrocyte surface antigen (Fragment)|
          Length = 760

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -1

Query: 327 KQYHPAEVAHILDSALSRLQPC----SSQNVPIFREIEMCMG 214
           +QY     AH+ +  L+ LQPC    S  NVPI  ++E   G
Sbjct: 435 EQYQKEREAHVSEYLLNILQPCIAGDSKWNVPIITKLEGLKG 476

>RESA_PLAFF (P13830) Ring-infected erythrocyte surface antigen precursor|
          Length = 1073

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
 Frame = -1

Query: 327 KQYHPAEVAHILDSALSRLQPC----SSQNVPIFREIEMCMG 214
           +QY     AH+ +  L+ LQPC    S  NVPI  ++E   G
Sbjct: 649 EQYQKEREAHVSEYLLNILQPCIAGDSKWNVPIITKLEGLKG 690

>SDC3_CHICK (P26261) Syndecan-3 precursor|
          Length = 405

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
 Frame = -1

Query: 435 SSPRVLPNGSDSEAQFPSELISSCVATILMIQNCTEKQYHPAEVAHILDSALSRLQPCS- 259
           + PR LP  S S    P+E  ++  ++   +      Q  P E+  +LDS L    P S 
Sbjct: 223 AKPRSLPKPSTSRTAEPTEKSTALPSSPTTLPPTEAPQVEPGELTTVLDSDLE--VPTSS 280

Query: 258 --SQNVPIFREIEMCMGIIKNQMLALIPTPS 172
             S +  I  E E     + N+++A++  P+
Sbjct: 281 GPSGDFEIQEEEETTRPELGNEVVAVVTPPA 311

>TET5_ENTFA (P11131) Tetracycline resistance protein tetM from transposon|
           Tn1545 (TetM(1545))
          Length = 639

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = +3

Query: 300 APLPRGDTASPCSSVSLGWSLRTTKSTLTGTGLRSRCRWAILLGWNV 440
           APLP G      SSVSLG+ L  +       G+R  C    L GWNV
Sbjct: 450 APLPLGSGVQYESSVSLGY-LNQSFQNAVMEGIRYGCEQG-LYGWNV 494

>NETB_DROME (Q24568) Netrin-B precursor|
          Length = 793

 Score = 28.9 bits (63), Expect = 6.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +1

Query: 190 RQHLVLDDTHAHLDLPEDG 246
           ++HL LDD H HLD   DG
Sbjct: 312 KKHLELDDDHLHLDYASDG 330

>PRM2_HYLLA (P35314) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 102

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 332 RRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSRCAWVSSRTRCWR 189
           RR   + R+      Q+ R C R  RR+C    R R    + R RC R
Sbjct: 54  RRRHCSRRRLHRIHRQQHRSCGRRRRRSCRQRRRHRRGCRTRRRRCRR 101

>PRM2_ERYPA (Q9GKM0) Protamine-2 (Protamine-P2) (Sperm histone P2)|
          Length = 103

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 16/48 (33%), Positives = 21/48 (43%)
 Frame = -2

Query: 332 RRSSITPRKWRTSSTQRCRGCNRAARRTCPSSGRSRCAWVSSRTRCWR 189
           RR   + R+      +R R C R  RR+C    R R    + R RC R
Sbjct: 55  RRRRCSQRRLHRIHRRRHRSCRRRRRRSCRHRRRHRRGCRTRRRRCRR 102

>Y2976_XANAC (Q8PIC2) UPF0042 protein XAC2976|
          Length = 282

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -3

Query: 430 PKSIAQRQRLRSPVPVRVDFVVRSDHPNDTELHGEAVSPRGSGAHPRLS 284
           P++I + ++L  P+  + D V+ +   N  +L    V+    G+H RLS
Sbjct: 114 PEAITRERQLTEPLRTQADAVIDTSTLNVHQLRRRVVTEFALGSHDRLS 162

>UPL2_ARATH (Q8H0T4) E3 ubiquitin protein ligase UPL2 (EC 6.3.2.-)|
           (Ubiquitin-protein ligase 2)
          Length = 3658

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -1

Query: 426 RVLPNGSDSEAQFPSELISSCVATI-LMIQNCTEKQYHPAEVAHI 295
           R+     +S+  FP + +   +  I L+++NCT KQ++ +   H+
Sbjct: 71  RIEEEFDESDPPFPKDAVLQVLRVIRLVLENCTNKQFYTSYEQHL 115

>ATL1R_ARATH (Q8LC69) RING-H2 finger protein ATL1R (RING-H2 finger protein ATL8)|
          Length = 185

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 3/27 (11%)
 Frame = -2

Query: 230 SRCAW---VSSRTRCWR*YPPPVASVH 159
           SRCAW   ++SR R  + +PPPVA+ +
Sbjct: 49  SRCAWLRRIASRNRSDQTHPPPVAAAN 75

>ATC9_YEAST (Q12697) Probable cation-transporting ATPase 2 (EC 3.6.3.-)|
          Length = 1472

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
 Frame = -3

Query: 373 FVVRSDHPNDTELHGEAVSPRGSGAHPRLSAVAAATVQLAERAHLQGDRDVHGYHQE--- 203
           +  R   P + E   + +    S  H   S+ +  +     R    G  DVH  H E   
Sbjct: 222 YTTRERIPIELESQTDEILEDESSTHSLESSDSRRSASENNRGSFSGHDDVHNQHSEYLK 281

Query: 202 PDAGADTHPQWLAFMHGQQHSL----LLLFIYTYVGRK--KLDNDICMWLVF 65
           PD     +PQ+   +H Q+  +    L++ I  Y   K   +  ++C +L F
Sbjct: 282 PDYHEKFYPQYAPNLHYQRFYIAEEDLVIGIAAYQTSKFWYIIYNLCCFLTF 333

>HXA1_HUMAN (P49639) Homeobox protein Hox-A1 (Hox-1F)|
          Length = 335

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 220 HGYHQEPDAGADTHPQWLAFMHGQQHSLLLLFIY 119
           H +HQ    GA   PQ++   +GQ+H  L L  Y
Sbjct: 143 HHHHQGYAGGAVGSPQYIHHSYGQEHQSLALATY 176

>HEMH_MYCAV (O07401) Ferrochelatase (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme|
           synthetase)
          Length = 335

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = -2

Query: 311 RKWRTS-STQRCRGCNRAARRTCPSSGR 231
           R WRTS     CRG +R  RRT P+  R
Sbjct: 22  RSWRTSPGAAACRGTSRPRRRTLPAFRR 49


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,959,027
Number of Sequences: 219361
Number of extensions: 1467066
Number of successful extensions: 4723
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 4571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4721
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)