>GLT1_SCHPO (Q9C102) Putative glutamate synthase [NADPH] (EC 1.4.1.13)|
            (NADPH-GOGAT)
          Length = 2111

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 21/63 (33%), Positives = 34/63 (53%)
 Frame = +3

Query: 123  QQIAQGTSGVHMYEMTHAKEMKLQPLQMLQPYTGGKHMVEGGEHLSTTIYDT*TIKQKHS 302
            +QIA G  GV  + ++ A E++++  Q  +P  GG+     G  +S +I      K +HS
Sbjct: 998  KQIASGRFGVTSWYLSDADELQIKMAQGAKPGEGGE---LPGNKVSESI-----AKTRHS 1049

Query: 303  TAG 311
            TAG
Sbjct: 1050 TAG 1052

>GLSN_MEDSA (Q03460) Glutamate synthase [NADH], chloroplast precursor (EC|
            1.4.1.14) (NADH-GOGAT)
          Length = 2194

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = +3

Query: 123  QQIAQGTSGVHMYEMTHAKEMKLQPLQMLQPYTGGK 230
            +Q+A G  GV  Y +T+A E++++  Q  +P  GG+
Sbjct: 1052 KQVASGRFGVSSYYLTNADELQIKMAQGAKPGEGGE 1087

>L2AM_DROLE (O96569) Alpha-methyldopa hypersensitive protein (EC 4.1.1.-)|
           (Fragment)
          Length = 439

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -2

Query: 244 PSTMCFPPVYGCNICKG*SFISLAWVISYICTPEVP*AICW**MSLIKFLNL 89
           P+++ +P + G  +  G S I  +W+ S  CT      + W    L KFL L
Sbjct: 10  PTSVSYPSIVGEMLASGFSIIGFSWICSPACTELEVVVMDW----LAKFLKL 57

>ATPA_PROMO (P29706) ATP synthase alpha chain, sodium ion specific (EC|
           3.6.3.15)
          Length = 500

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
 Frame = +3

Query: 195 PLQMLQPYTG---GKHMVEGGEHLSTTIYDT*TIKQKHSTAGESRSL 326
           PLQ + PYTG   G++ ++ GEH+   +YD      KH+ A    SL
Sbjct: 233 PLQYMAPYTGVSMGEYFMDKGEHV-LIVYDD---LSKHAVAYREMSL 275

>ITCH_MOUSE (Q8C863) Itchy E3 ubiquitin protein ligase (EC 6.3.2.-)|
          Length = 864

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 23/88 (26%), Positives = 38/88 (43%)
 Frame = +3

Query: 54  ILLPLVKILKRFKFRNLIKLIHYQQIAQGTSGVHMYEMTHAKEMKLQPLQMLQPYTGGKH 233
           I+ P  K+  R      +K      +  GT+G+ +YE   +  MKL+ + M     G K 
Sbjct: 72  IVTPTSKLCFRVWSHQTLK----SDVLLGTAGLDIYETLKSNNMKLEEVVMTLQLVGDKE 127

Query: 234 MVEGGEHLSTTIYDT*TIKQKHSTAGES 317
             E    LS  + D   ++ +  T GE+
Sbjct: 128 PTETMGDLSVCL-DGLQVEAEVVTNGET 154

>NMD4_YEAST (Q12129) Nonsense-mediated decay protein 4|
          Length = 218

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +3

Query: 45  DSSILLPLVKILKRFKFRNLIKLIHYQQIAQGTSGVHMY---EMTHAKEMKLQ 194
           DSS  + + K+ KR K  NL+K   Y+   +G  G+H +   E    +EM +Q
Sbjct: 98  DSSGKINIAKLPKRLK--NLLKSCIYKCYLEGNEGLHWFLISEDPQIREMAMQ 148

>TMK1_ARATH (P43298) Putative receptor protein kinase TMK1 precursor (EC|
           2.7.11.1)
          Length = 942

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 11/74 (14%)
 Frame = +3

Query: 69  VKILKRFKFRNLI-----------KLIHYQQIAQGTSGVHMYEMTHAKEMKLQPLQMLQP 215
           + +L + + R+L+           KL+ Y+ + QGT   H++E +   E  L+PL   Q 
Sbjct: 635 IAVLTKVRHRHLVTLLGYCLDGNEKLLVYEYMPQGTLSRHLFEWS---EEGLKPLLWKQR 691

Query: 216 YTGGKHMVEGGEHL 257
            T    +  G E+L
Sbjct: 692 LTLALDVARGVEYL 705


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,634,717
Number of Sequences: 219361
Number of extensions: 1143992
Number of successful extensions: 2024
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2024
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)