>RUVB_SYNSC (Q3AND8) Holliday junction ATP-dependent DNA helicase ruvB (EC|
           3.6.1.-)
          Length = 348

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 7/70 (10%)
 Frame = -2

Query: 355 PDARRSFSDTSMHVP--ASGLDRR-----PARGRGGRSTDWHAVGRTVSMHACMHRSASS 197
           P AR S + +    P  A+ L RR       RG GG + +   VG  +S+H   HR   +
Sbjct: 220 PQARSSIAASCRGTPRIANRLLRRVRDVASVRGGGGGAINQALVGEALSLHRVDHRGLDA 279

Query: 196 TCRRALMLFI 167
           + RR L L I
Sbjct: 280 SDRRLLQLLI 289

>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)|
          Length = 999

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 13/24 (54%), Positives = 19/24 (79%)
 Frame = -1

Query: 443  VVCTSQIPSNRPSMAEVVQILQVI 372
            ++CTS +P NRPSM +VV +LQ +
Sbjct: 944  LLCTSPLPLNRPSMRKVVIMLQEV 967

>KIN31_CAEEL (P34265) Probable tyrosine-protein kinase kin-31 (EC 2.7.10.2)|
          Length = 437

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -1

Query: 437 CTSQIPSNRPSMAEVVQILQVIRAPSLPGCTA 342
           C ++ P++RP+M++V QILQ +     P   A
Sbjct: 358 CCAENPNDRPTMSDVAQILQRVTGQGRPNFAA 389

>FBLN1_CAEEL (O77469) Fibulin-1 precursor|
          Length = 728

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +3

Query: 207 DLCMHACMDTVRPTACQSVDLPPLPLAGRRSSPLAGTCIDVSE 335
           DLCM  C++T     CQ    PP    G +  P   TC+DV E
Sbjct: 528 DLCMGGCINTKGSYLCQ---CPP----GYKIQPDGRTCVDVDE 563

>YJDA_ECOLI (P16694) Hypothetical protein yjdA|
          Length = 742

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 327 VSEKLRRASGQRWGPDDLQDLDHLRH 404
           V +    A G+RW   DL DL+H+RH
Sbjct: 363 VEDFAHAALGRRWRHADLADLEHIRH 388

>HUPK_RHOCA (P30797) Hydrogenase expression/formation protein hupK|
          Length = 294

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 292 RPARGRGGRSTDWHAVGRTVSMHA-CMHRSASSTCRRALML 173
           R A  R GR   W A+GR V +HA  +   A++T R  L L
Sbjct: 180 RQAEARFGRGPFWRALGRIVDLHAFALAPPAAATPRPGLAL 220

>PTPA2_ASPFU (Q4WSA8) Serine/threonine-protein phosphatase 2A activator 2 (EC|
           5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-2)
           (PPIase PTPA-2) (Rotamase PTPA-2) (Phosphotyrosyl
           phosphatase activator 2)
          Length = 422

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 15/71 (21%)
 Frame = +3

Query: 276 LPLAGRRSSPLAGTCIDVSEK---LRRASGQRWGPDDLQ------------DLDHLRHGR 410
           +P     SSP AGT +D+S+K   LR +     GP   +            DL    + R
Sbjct: 2   MPSHATMSSPPAGTKLDLSKKLSELRASRRSHSGPSPREPTPVTPPLPSPPDLSTHTYTR 61

Query: 411 PVRRDLRRAYH 443
           PVRR L R  H
Sbjct: 62  PVRRILSRKDH 72

>METH_SYNY3 (Q55786) Methionine synthase (EC 2.1.1.13)|
           (5-methyltetrahydrofolate--homocysteine
           methyltransferase) (Methionine synthase, vitamin-B12
           dependent isozyme) (MS)
          Length = 1195

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 23/83 (27%), Positives = 34/83 (40%)
 Frame = +3

Query: 177 INARRHVLLADLCMHACMDTVRPTACQSVDLPPLPLAGRRSSPLAGTCIDVSEKLRRASG 356
           +N     +L  + +H CM      A  S +   LPLA +        C+D+    R   G
Sbjct: 549 LNPAARQVLNSIFLHECMQVGMDAAIVSAN-KILPLA-KIDPEQQQVCLDLIYDRREFEG 606

Query: 357 QRWGPDDLQDLDHLRHGRPVRRD 425
           +R   D L  L  L  G+  +RD
Sbjct: 607 ERCTYDPLTKLTTLFEGKTTKRD 629

>SLBP_HUMAN (Q14493) Histone RNA hairpin-binding protein (Histone|
           stem-loop-binding protein)
          Length = 270

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +3

Query: 342 RRASGQRWGPDDLQDLDH 395
           RRA G+RW P+D ++ +H
Sbjct: 33  RRADGRRWRPEDAEEAEH 50

>DPOLA_TRYBB (P27727) DNA polymerase alpha catalytic subunit (EC 2.7.7.7) (DNA|
           polymerase I)
          Length = 1339

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 240 VPCPCMHACIDPRVVR 193
           +P PC+H CI P+V+R
Sbjct: 796 LPSPCLHKCILPKVIR 811


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,255,213
Number of Sequences: 219361
Number of extensions: 1127002
Number of successful extensions: 3008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3006
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)