ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30e12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX294162.23| Zebrafish DNA sequence from clone CH211-270C5 i... 42 0.47
2emb|BX548076.6| Zebrafish DNA sequence from clone CH211-154A22 i... 42 0.47
3emb|BX294165.10| Zebrafish DNA sequence from clone DKEYP-20E4 in... 42 0.47
4gb|AC104881.9| Mus musculus chromosome 18, clone RP23-244A24, co... 40 1.8
5gb|AC090095.7| Homo sapiens, clone RP11-296C13, complete sequence 40 1.8
6gb|AC018443.9|AC018443 Homo sapiens chromosome 8, clone RP11-674... 40 1.8
7emb|AL935290.10| Zebrafish DNA sequence from clone CH211-270H11,... 40 1.8
8gb|AC158772.5| Mus musculus chromosome 18, clone RP23-291M14, co... 40 1.8
9gb|AC163620.4| Mus musculus BAC clone RP23-117D22 from chromosom... 38 7.3
10gb|AC150577.4| Bos taurus BAC CH240-268P24 (Children's Hospital... 38 7.3
11gb|AC138084.4| Mus musculus BAC clone RP23-353F23 from chromosom... 38 7.3
12gb|AC093483.6| Mus musculus chromosome 9, clone RP23-79K5, compl... 38 7.3
13gb|AC107662.9| Mus musculus chromosome 9, clone RP23-99B22, comp... 38 7.3
14gb|AC027118.9| Homo sapiens chromosome 10 clone RP11-573I11, com... 38 7.3
15emb|BX571757.8| Zebrafish DNA sequence from clone CH211-273J9 in... 38 7.3
16emb|BX294661.14| Zebrafish DNA sequence from clone CH211-199I18 ... 38 7.3
17emb|BX470188.11| Zebrafish DNA sequence from clone DKEY-206F10 i... 38 7.3
18emb|AL844491.14| Mouse DNA sequence from clone RP23-173A8 on chr... 38 7.3
19emb|CR383674.8| Zebrafish DNA sequence from clone DKEY-17G17 in ... 38 7.3
20dbj|AP006351.1| Lotus japonicus genomic DNA, chromosome 6, clone... 38 7.3
21emb|AL831738.4| Mouse DNA sequence from clone RP23-451K12 on chr... 38 7.3
22emb|AL833798.8| Mouse DNA sequence from clone RP23-130L21 on chr... 38 7.3

>emb|BX294162.23| Zebrafish DNA sequence from clone CH211-270C5 in linkage group 10,
             complete sequence
          Length = 150791

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 64    cttacaatgaacaagtaaaacataa 88
             |||||||||||||| ||||||||||
Sbjct: 92299 cttacaatgaacaaataaaacataa 92323



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>emb|BX548076.6| Zebrafish DNA sequence from clone CH211-154A22 in linkage group 15,
             complete sequence
          Length = 175161

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 64    cttacaatgaacaagtaaaacataa 88
             |||||||||||||||||||| ||||
Sbjct: 71620 cttacaatgaacaagtaaaaaataa 71596



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>emb|BX294165.10| Zebrafish DNA sequence from clone DKEYP-20E4 in linkage group 22,
             complete sequence
          Length = 125073

 Score = 42.1 bits (21), Expect = 0.47
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 64    cttacaatgaacaagtaaaacataa 88
             |||||||||||||||||||| ||||
Sbjct: 70680 cttacaatgaacaagtaaaaaataa 70656



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>gb|AC104881.9| Mus musculus chromosome 18, clone RP23-244A24, complete sequence
          Length = 184796

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 79     taaaacataacttattatcttttg 102
              |||||| |||||||||||||||||
Sbjct: 140955 taaaacttaacttattatcttttg 140978



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>gb|AC090095.7| Homo sapiens, clone RP11-296C13, complete sequence
          Length = 194074

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 69    aatgaacaagtaaaacataa 88
             ||||||||||||||||||||
Sbjct: 94450 aatgaacaagtaaaacataa 94431



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>gb|AC018443.9|AC018443 Homo sapiens chromosome 8, clone RP11-674A24, complete sequence
          Length = 199810

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 69     aatgaacaagtaaaacataa 88
              ||||||||||||||||||||
Sbjct: 127445 aatgaacaagtaaaacataa 127426



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>emb|AL935290.10| Zebrafish DNA sequence from clone CH211-270H11, complete sequence
          Length = 129665

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 84   cataacttattatcttttgg 103
            ||||||||||||||||||||
Sbjct: 1812 cataacttattatcttttgg 1831



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>gb|AC158772.5| Mus musculus chromosome 18, clone RP23-291M14, complete sequence
          Length = 198851

 Score = 40.1 bits (20), Expect = 1.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 79    taaaacataacttattatcttttg 102
             |||||| |||||||||||||||||
Sbjct: 24305 taaaacttaacttattatcttttg 24328



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>gb|AC163620.4| Mus musculus BAC clone RP23-117D22 from chromosome 18, complete sequence
          Length = 201850

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 45     cttacactcttacagccat 63
              |||||||||||||||||||
Sbjct: 136941 cttacactcttacagccat 136959



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>gb|AC150577.4| Bos taurus  BAC CH240-268P24 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 167618

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 79     taaaacataacttattatctttt 101
              |||||||||||||||| ||||||
Sbjct: 131489 taaaacataacttattttctttt 131511



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>gb|AC138084.4| Mus musculus BAC clone RP23-353F23 from chromosome 18, complete
             sequence
          Length = 186489

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 45    cttacactcttacagccat 63
             |||||||||||||||||||
Sbjct: 64311 cttacactcttacagccat 64329



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>gb|AC093483.6| Mus musculus chromosome 9, clone RP23-79K5, complete sequence
          Length = 262048

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 76    aagtaaaacataacttatt 94
             |||||||||||||||||||
Sbjct: 52530 aagtaaaacataacttatt 52512



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>gb|AC107662.9| Mus musculus chromosome 9, clone RP23-99B22, complete sequence
          Length = 233476

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 76     aagtaaaacataacttatt 94
              |||||||||||||||||||
Sbjct: 139023 aagtaaaacataacttatt 139005



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>gb|AC027118.9| Homo sapiens chromosome 10 clone RP11-573I11, complete sequence
          Length = 170255

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 99     tttggcaaggtatatgatt 117
              |||||||||||||||||||
Sbjct: 161999 tttggcaaggtatatgatt 161981



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>emb|BX571757.8| Zebrafish DNA sequence from clone CH211-273J9 in linkage group 16,
             complete sequence
          Length = 167101

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 69    aatgaacaagtaaaacata 87
             |||||||||||||||||||
Sbjct: 85679 aatgaacaagtaaaacata 85661



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>emb|BX294661.14| Zebrafish DNA sequence from clone CH211-199I18 in linkage group 20,
            complete sequence
          Length = 197237

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 75   caagtaaaacataacttat 93
            |||||||||||||||||||
Sbjct: 8279 caagtaaaacataacttat 8297



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>emb|BX470188.11| Zebrafish DNA sequence from clone DKEY-206F10 in linkage group 20,
             complete sequence
          Length = 167082

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 81    aaacataacttattatctt 99
             |||||||||||||||||||
Sbjct: 59283 aaacataacttattatctt 59301



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>emb|AL844491.14| Mouse DNA sequence from clone RP23-173A8 on chromosome 11, complete
              sequence
          Length = 180637

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 37     atccataacttacactctt 55
              |||||||||||||||||||
Sbjct: 104796 atccataacttacactctt 104814



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>emb|CR383674.8| Zebrafish DNA sequence from clone DKEY-17G17 in linkage group 25,
              complete sequence
          Length = 212086

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 77     agtaaaacataacttattatctt 99
              ||||||||||| |||||||||||
Sbjct: 200686 agtaaaacatatcttattatctt 200708



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>dbj|AP006351.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT04E21, TM0336,
             complete sequence
          Length = 113233

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 37    atccataacttacactcttacag 59
             |||||| ||||||||||||||||
Sbjct: 12284 atccatcacttacactcttacag 12306



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>emb|AL831738.4| Mouse DNA sequence from clone RP23-451K12 on chromosome 4, complete
             sequence
          Length = 188894

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 105   aaggtatatgattggaaag 123
             |||||||||||||||||||
Sbjct: 84213 aaggtatatgattggaaag 84231



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>emb|AL833798.8| Mouse DNA sequence from clone RP23-130L21 on chromosome 4, complete
             sequence
          Length = 214799

 Score = 38.2 bits (19), Expect = 7.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 74    acaagtaaaacataacttattat 96
             |||| ||||||||||||||||||
Sbjct: 61201 acaactaaaacataacttattat 61179


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,417,659
Number of Sequences: 3902068
Number of extensions: 1417659
Number of successful extensions: 98885
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98830
Number of HSP's gapped (non-prelim): 55
length of query: 151
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 130
effective length of database: 17,151,101,840
effective search space: 2229643239200
effective search space used: 2229643239200
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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