ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl30e09 |
|---|---|
| Clone Library Name | barley_pub |
>COPG_CAEEL (Q22498) Probable coatomer subunit gamma (Gamma-coat protein)| (Gamma-COP) Length = 870 Score = 33.5 bits (75), Expect = 0.21 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%) Frame = -3 Query: 416 HTCLLSGVFIGNVKVLVRLSFGIS-GPEEVAMKLAVRSDDPEVSDRI 279 HT LSGVF G VL + + + +AM + ++S++P V+D + Sbjct: 819 HTVFLSGVFRGGYDVLSKATVAVDPNDNSIAMNIIIKSNEPLVADLV 865
>NUGC_WHEAT (Q95H60) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 32.0 bits (71), Expect = 0.62 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 398 GVFIGNVKVLVRLSFGISGPEEVAMKLAVRSDDPEV 291 G + +V L R+ +GI PEEV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACOF (Q6ENW0) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 32.0 bits (71), Expect = 0.62 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 398 GVFIGNVKVLVRLSFGISGPEEVAMKLAVRSDDPEV 291 G + +V L R+ +GI PEEV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SACHY (Q6L396) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 32.0 bits (71), Expect = 0.62 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 398 GVFIGNVKVLVRLSFGISGPEEVAMKLAVRSDDPEV 291 G + +V L R+ +GI PEEV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYSA (P12200) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 32.0 bits (71), Expect = 0.62 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 398 GVFIGNVKVLVRLSFGISGPEEVAMKLAVRSDDPEV 291 G + +V L R+ +GI PEEV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_ORYNI (Q6ENH1) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 32.0 bits (71), Expect = 0.62 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 398 GVFIGNVKVLVRLSFGISGPEEVAMKLAVRSDDPEV 291 G + +V L R+ +GI PEEV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_MAIZE (P19124) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 159 Score = 32.0 bits (71), Expect = 0.62 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -3 Query: 398 GVFIGNVKVLVRLSFGISGPEEVAMKLAVRSDDPEV 291 G + +V L R+ +GI PEEV +K+ + D+P + Sbjct: 63 GGSLASVYHLTRIQYGIDNPEEVCIKVFAQKDNPRI 98
>NUGC_SOYBN (P31174) NAD(P)H-quinone oxidoreductase chain J, chloroplast (EC| 1.6.5.-) (NAD(P)H dehydrogenase, chain J) (NADH-plastoquinone oxidoreductase subunit J) Length = 158 Score = 30.8 bits (68), Expect = 1.4 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = -3 Query: 398 GVFIGNVKVLVRLSFGISGPEEVAMKLAVRSDDPEV 291 G + +V L RL +GI PEEV +K+ V +P + Sbjct: 62 GGLLASVYHLTRLEYGIDQPEEVCIKIFVARKNPRI 97
>TRPA_THETN (Q8R9N0) Tryptophan synthase alpha chain (EC 4.2.1.20)| Length = 262 Score = 28.9 bits (63), Expect = 5.3 Identities = 19/37 (51%), Positives = 21/37 (56%) Frame = -3 Query: 362 LSFGISGPEEVAMKLAVRSDDPEVSDRIHEIVANG*N 252 L FGISGP E+A KL SD V I E +A G N Sbjct: 208 LGFGISGP-EMARKLKSLSDGIVVGSAIVERIAKGYN 243
>SYS_STAES (Q8CU95) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 428 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = -3 Query: 341 PEEVAMKLAVRSDDPEVSDRIHEI 270 PE+V K+ +R DDP+V D++ E+ Sbjct: 11 PEKVKSKIELRGDDPKVVDQVLEL 34
>SYS_STAEQ (Q5HK07) Seryl-tRNA synthetase (EC 6.1.1.11) (Serine--tRNA ligase)| (SerRS) Length = 428 Score = 28.9 bits (63), Expect = 5.3 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = -3 Query: 341 PEEVAMKLAVRSDDPEVSDRIHEI 270 PE+V K+ +R DDP+V D++ E+ Sbjct: 11 PEKVKSKIELRGDDPKVVDQVLEL 34
>REXO3_YARLI (Q6CFE7) RNA exonuclease 3 (EC 3.1.-.-)| Length = 757 Score = 28.5 bits (62), Expect = 6.9 Identities = 18/56 (32%), Positives = 28/56 (50%) Frame = +1 Query: 259 PFATISWILSLTSGSSDLTASFMATSSGPLIPNDSLTKTFTLPMNTPESRQVCDLE 426 PF T+S SL + +S T++ TS+ P+ TKT + P +TP L+ Sbjct: 466 PFRTVSTSESLDTSTSTSTSTSATTSA----PSAKSTKTASRPASTPTKSLTSSLD 517
>T2R46_PAPHA (Q646G0) Taste receptor type 2 member 46 (T2R46)| Length = 309 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/37 (35%), Positives = 22/37 (59%) Frame = -1 Query: 214 LAFHLVKAQGISINYSIWLCVSWFSRWNPTVVAASFL 104 LAFH V+ + S Y++W+ + FS W T ++ +L Sbjct: 73 LAFHSVEVR--STAYNVWVVTNHFSNWLSTSLSMFYL 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,990,968 Number of Sequences: 219361 Number of extensions: 973960 Number of successful extensions: 2216 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 2187 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2215 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
