ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30e09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_477026.1| Oryza sativa (japonica cultivar-group), mRNA 186 4e-44
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 186 4e-44
3dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic D... 186 4e-44
4dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic D... 186 4e-44
5dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 4e-44
6gb|BT017026.1| Zea mays clone EK07D2312G12.c mRNA sequence 135 1e-28
7ref|NM_187618.1| Oryza sativa (japonica cultivar-group), predic... 100 7e-18
8gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 100 7e-18
9gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome... 100 7e-18
10dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 100 7e-18
11dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clon... 100 7e-18
12gb|BT017505.1| Zea mays clone EL01N0414H09.c mRNA sequence 86 1e-13
13gb|AY111369.1| Zea mays CL858_1 mRNA sequence 56 1e-04
14dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
15dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
16dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
17gb|AC140272.3| Mus musculus BAC clone RP23-332G6 from 8, complet... 42 1.5
18dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone... 42 1.5
19gb|AC129981.9| Mus musculus chromosome 5, clone RP23-114I13, com... 40 5.7
20gb|AC116324.6| Mus musculus BAC clone RP23-282P1 from 16, comple... 40 5.7
21gb|AC126722.7| Rattus norvegicus 4 BAC CH230-5L13 (Children's Ho... 40 5.7
22emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genom... 40 5.7
23emb|BX294445.10| Zebrafish DNA sequence from clone DKEY-265K11 i... 40 5.7
24gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, comp... 40 5.7
25emb|BX323992.9| Zebrafish DNA sequence from clone DKEY-185B14 in... 40 5.7
26gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, comp... 40 5.7
27dbj|AK031002.1| Mus musculus adult male thymus cDNA, RIKEN full-... 40 5.7
28emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on ch... 40 5.7
29emb|BX248130.8| Zebrafish DNA sequence from clone CH211-236E5 in... 40 5.7
30gb|AC068129.6| Homo sapiens BAC clone RP11-619F9 from 2, complet... 40 5.7
31gb|AC016622.5|AC016622 Homo sapiens chromosome 5 clone CTD-2343F... 40 5.7
32gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O... 40 5.7
33emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 i... 40 5.7
34emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, ... 40 5.7
35emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 i... 40 5.7
36emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chr... 40 5.7
37emb|CR854912.18| Zebrafish DNA sequence from clone DKEY-39O12 in... 40 5.7
38emb|AL935150.10| Mouse DNA sequence from clone RP24-482A24 on ch... 40 5.7
39emb|AL845468.4| Mouse DNA sequence from clone RP23-67E6 on chrom... 40 5.7 
>ref|XM_477026.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3193

 Score =  186 bits (94), Expect = 4e-44
 Identities = 154/174 (88%)
 Strand = Plus / Minus

                                                                        
Query: 254  tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 313
            |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 2841

                                                                        
Query: 314  cagctagcttcatggccacttcttccggcccgctgattccaaatgatagtctcaccaaaa 373
            | |||||||||||||||||||| | ||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 2840 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 2781

                                                                  
Query: 374  ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaat 427
            |||||||||| ||||| |||||||| || |||||||||||||| || |||||||
Sbjct: 2780 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaat 2727



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 63   tgtggttccaaatcaaccaaaaattgtt 90
            |||||||||||||||| |||||||||||
Sbjct: 3098 tgtggttccaaatcaatcaaaaattgtt 3071
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  186 bits (94), Expect = 4e-44
 Identities = 154/174 (88%)
 Strand = Plus / Minus

                                                                           
Query: 254     tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 313
               |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 5491408 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 5491349

                                                                           
Query: 314     cagctagcttcatggccacttcttccggcccgctgattccaaatgatagtctcaccaaaa 373
               | |||||||||||||||||||| | ||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 5491348 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 5491289

                                                                     
Query: 374     ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaat 427
               |||||||||| ||||| |||||||| || |||||||||||||| || |||||||
Sbjct: 5491288 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaat 5491235



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                           
Query: 63      tgtggttccaaatcaaccaaaaattgtt 90
               |||||||||||||||| |||||||||||
Sbjct: 5491606 tgtggttccaaatcaatcaaaaattgtt 5491579
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>dbj|AP005171.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBa0081K20
          Length = 117287

 Score =  186 bits (94), Expect = 4e-44
 Identities = 154/174 (88%)
 Strand = Plus / Minus

                                                                        
Query: 254  tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 313
            |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 4493 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 4434

                                                                        
Query: 314  cagctagcttcatggccacttcttccggcccgctgattccaaatgatagtctcaccaaaa 373
            | |||||||||||||||||||| | ||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 4433 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 4374

                                                                  
Query: 374  ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaat 427
            |||||||||| ||||| |||||||| || |||||||||||||| || |||||||
Sbjct: 4373 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaat 4320



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 63   tgtggttccaaatcaaccaaaaattgtt 90
            |||||||||||||||| |||||||||||
Sbjct: 4691 tgtggttccaaatcaatcaaaaattgtt 4664
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>dbj|AP005259.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0519E02
          Length = 139321

 Score =  186 bits (94), Expect = 4e-44
 Identities = 154/174 (88%)
 Strand = Plus / Minus

                                                                          
Query: 254    tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 313
              |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 125389 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 125330

                                                                          
Query: 314    cagctagcttcatggccacttcttccggcccgctgattccaaatgatagtctcaccaaaa 373
              | |||||||||||||||||||| | ||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 125329 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 125270

                                                                    
Query: 374    ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaat 427
              |||||||||| ||||| |||||||| || |||||||||||||| || |||||||
Sbjct: 125269 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaat 125216



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                          
Query: 63     tgtggttccaaatcaaccaaaaattgtt 90
              |||||||||||||||| |||||||||||
Sbjct: 125587 tgtggttccaaatcaatcaaaaattgtt 125560
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>dbj|AK100095.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004B12, full
            insert sequence
          Length = 3193

 Score =  186 bits (94), Expect = 4e-44
 Identities = 154/174 (88%)
 Strand = Plus / Minus

                                                                        
Query: 254  tttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatctga 313
            |||||||||||||||| |||||||||||| ||||||||| ||| ||||||||||||||||
Sbjct: 2900 tttagccatttgcaacgatttcatggatcttgtcactgatctcaggatcatctgatctga 2841

                                                                        
Query: 314  cagctagcttcatggccacttcttccggcccgctgattccaaatgatagtctcaccaaaa 373
            | |||||||||||||||||||| | ||| ||||| | ||| ||||| || ||||| ||||
Sbjct: 2840 ctgctagcttcatggccacttccttcggtccgctaagtccgaatgacagcctcactaaaa 2781

                                                                  
Query: 374  ctttcacattaccgatgaacacacctgaaagcaggcaagtgtgcgatctcgaat 427
            |||||||||| ||||| |||||||| || |||||||||||||| || |||||||
Sbjct: 2780 ctttcacattgccgataaacacaccagatagcaggcaagtgtgtgacctcgaat 2727



 Score = 48.1 bits (24), Expect = 0.024
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                        
Query: 63   tgtggttccaaatcaaccaaaaattgtt 90
            |||||||||||||||| |||||||||||
Sbjct: 3098 tgtggttccaaatcaatcaaaaattgtt 3071
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>gb|BT017026.1| Zea mays clone EK07D2312G12.c mRNA sequence
          Length = 1125

 Score =  135 bits (68), Expect = 1e-28
 Identities = 143/168 (85%)
 Strand = Plus / Minus

                                                                       
Query: 252 gttttagccatttgcaacaatttcatggatcctgtcactgacctccggatcatctgatct 311
           |||||||||||| || |||||||| |||||||||||||||| ||| |||||||| |||||
Sbjct: 960 gttttagccattagcgacaatttcgtggatcctgtcactgatctctggatcatcagatct 901

                                                                       
Query: 312 gacagctagcttcatggccacttcttccggcccgctgattccaaatgatagtctcaccaa 371
            || || |||||||||||||| || | |||  | || ||||||||||| |||||||||||
Sbjct: 900 aactgccagcttcatggccacctccttcggtgcactaattccaaatgacagtctcaccaa 841

                                                           
Query: 372 aactttcacattaccgatgaacacacctgaaagcaggcaagtgtgcga 419
            |||||||| || || || |||||||| || ||||| |||||||||||
Sbjct: 840 gactttcacgttgccaataaacacaccagagagcagacaagtgtgcga 793
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>ref|NM_187618.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2481

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 131/158 (82%)
 Strand = Plus / Minus

                                                                        
Query: 265  gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 324
            |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 2471 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 2412

                                                                        
Query: 325  atggccacttcttccggcccgctgattccaaatgatagtctcaccaaaactttcacatta 384
            || |||||||| |  |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 2411 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 2352

                                                  
Query: 385  ccgatgaacacacctgaaagcaggcaagtgtgcgatct 422
            |||||||||||||| || ||||||||||||||||||||
Sbjct: 2351 ccgatgaacacaccagacagcaggcaagtgtgcgatct 2314
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 131/158 (82%)
 Strand = Plus / Minus

                                                                           
Query: 265     gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 324
               |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 6651732 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 6651673

                                                                           
Query: 325     atggccacttcttccggcccgctgattccaaatgatagtctcaccaaaactttcacatta 384
               || |||||||| |  |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 6651672 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 6651613

                                                     
Query: 385     ccgatgaacacacctgaaagcaggcaagtgtgcgatct 422
               |||||||||||||| || ||||||||||||||||||||
Sbjct: 6651612 ccgatgaacacaccagacagcaggcaagtgtgcgatct 6651575
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>gb|AC104473.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1626B05,
             complete sequence
          Length = 127946

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 131/158 (82%)
 Strand = Plus / Minus

                                                                         
Query: 265   gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 324
             |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 37280 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 37221

                                                                         
Query: 325   atggccacttcttccggcccgctgattccaaatgatagtctcaccaaaactttcacatta 384
             || |||||||| |  |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 37220 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 37161

                                                   
Query: 385   ccgatgaacacacctgaaagcaggcaagtgtgcgatct 422
             |||||||||||||| || ||||||||||||||||||||
Sbjct: 37160 ccgatgaacacaccagacagcaggcaagtgtgcgatct 37123
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 131/158 (82%)
 Strand = Plus / Minus

                                                                           
Query: 265     gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 324
               |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 6650945 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 6650886

                                                                           
Query: 325     atggccacttcttccggcccgctgattccaaatgatagtctcaccaaaactttcacatta 384
               || |||||||| |  |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 6650885 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 6650826

                                                     
Query: 385     ccgatgaacacacctgaaagcaggcaagtgtgcgatct 422
               |||||||||||||| || ||||||||||||||||||||
Sbjct: 6650825 ccgatgaacacaccagacagcaggcaagtgtgcgatct 6650788
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>dbj|AK068454.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155G01, full
            insert sequence
          Length = 3214

 Score = 99.6 bits (50), Expect = 7e-18
 Identities = 131/158 (82%)
 Strand = Plus / Minus

                                                                        
Query: 265  gcaacaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttc 324
            |||||||| || |||||| |||||||||| || ||||||||||| ||||| || ||||||
Sbjct: 2825 gcaacaatctcgtggatcttgtcactgacttcgggatcatctgacctgacggcaagcttc 2766

                                                                        
Query: 325  atggccacttcttccggcccgctgattccaaatgatagtctcaccaaaactttcacatta 384
            || |||||||| |  |||||||| | |||||| ||||| || || | ||| ||  | |  
Sbjct: 2765 atcgccacttccttgggcccgctcagtccaaacgatagcctgacaagaaccttggcgtcg 2706

                                                  
Query: 385  ccgatgaacacacctgaaagcaggcaagtgtgcgatct 422
            |||||||||||||| || ||||||||||||||||||||
Sbjct: 2705 ccgatgaacacaccagacagcaggcaagtgtgcgatct 2668
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>gb|BT017505.1| Zea mays clone EL01N0414H09.c mRNA sequence
          Length = 886

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 124/151 (82%)
 Strand = Plus / Minus

                                                                       
Query: 269 caatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttcatgg 328
           ||||||| |||||| ||||||||| ||| |||||||| ||||| || || || |||||||
Sbjct: 679 caatttcgtggatcttgtcactgagctctggatcatcagatctaactgccaggttcatgg 620

                                                                       
Query: 329 ccacttcttccggcccgctgattccaaatgatagtctcaccaaaactttcacattaccga 388
           |||| || | |||  | ||||||||||| || ||||||||||| |||||||| || || |
Sbjct: 619 ccacctccttcggggcactgattccaaaggaaagtctcaccaagactttcacgttgccaa 560

                                          
Query: 389 tgaacacacctgaaagcaggcaagtgtgcga 419
           | | ||| || || ||||| |||||||||||
Sbjct: 559 taaccaccccagagagcagacaagtgtgcga 529
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>gb|AY111369.1| Zea mays CL858_1 mRNA sequence
          Length = 1437

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 76/92 (82%)
 Strand = Plus / Minus

                                                                        
Query: 268  acaatttcatggatcctgtcactgacctccggatcatctgatctgacagctagcttcatg 327
            ||||| ||||| ||| | |||||||| || || ||||||||||| |||||||  ||||| 
Sbjct: 1194 acaatctcatgaatcttatcactgacttcagggtcatctgatctcacagctaatttcatt 1135

                                            
Query: 328  gccacttcttccggcccgctgattccaaatga 359
            |||||||| |  |||||||| | |||||||||
Sbjct: 1134 gccacttcgttgggcccgctcagtccaaatga 1103
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 204      tggaaagccaaaacaacaaaa 224
                |||||||||||||||||||||
Sbjct: 21750132 tggaaagccaaaacaacaaaa 21750112
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>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0429B05
          Length = 155024

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 204   tggaaagccaaaacaacaaaa 224
             |||||||||||||||||||||
Sbjct: 29715 tggaaagccaaaacaacaaaa 29695
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>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
              clone:P0479C12
          Length = 136799

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 204    tggaaagccaaaacaacaaaa 224
              |||||||||||||||||||||
Sbjct: 117702 tggaaagccaaaacaacaaaa 117682
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>gb|AC140272.3| Mus musculus BAC clone RP23-332G6 from 8, complete sequence
          Length = 228667

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 26     atgtactattgaagtcaaggaggatataa 54
              |||| |||||||||| |||||||||||||
Sbjct: 142350 atgtgctattgaagtaaaggaggatataa 142378
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>dbj|AP006864.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT18I21, TM1144,
             complete sequence
          Length = 135217

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 213   aaaacaacaaaaaggtcaaccaaaa 237
             |||||||||||||||||||| ||||
Sbjct: 66692 aaaacaacaaaaaggtcaacaaaaa 66716
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>gb|AC129981.9| Mus musculus chromosome 5, clone RP23-114I13, complete sequence
          Length = 198469

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 353    caaatgatagtctcaccaaa 372
              ||||||||||||||||||||
Sbjct: 134144 caaatgatagtctcaccaaa 134163
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>gb|AC116324.6| Mus musculus BAC clone RP23-282P1 from 16, complete sequence
          Length = 200774

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 362    gtctcaccaaaactttcaca 381
              ||||||||||||||||||||
Sbjct: 141172 gtctcaccaaaactttcaca 141153
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>gb|AC126722.7| Rattus norvegicus 4 BAC CH230-5L13 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 217690

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aaaacaacaaaaaggtcaac 232
             ||||||||||||||||||||
Sbjct: 30996 aaaacaacaaaaaggtcaac 31015
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>emb|BX321857.1| Nitrosomonas europaea ATCC 19718, complete genome; segment 2/10
          Length = 313050

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 208 aagccaaaacaacaaaaagg 227
           ||||||||||||||||||||
Sbjct: 565 aagccaaaacaacaaaaagg 584
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>emb|BX294445.10| Zebrafish DNA sequence from clone DKEY-265K11 in linkage group 1,
             complete sequence
          Length = 159780

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 392   acacacctgaaagcaggcaa 411
             ||||||||||||||||||||
Sbjct: 98857 acacacctgaaagcaggcaa 98876
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>gb|AC099065.2| Homo sapiens chromosome 1 clone RP11-105I12, complete sequence
          Length = 181253

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 203    atggaaagccaaaacaacaaaaaggtcaaccaaaaa 238
              ||||||||| |||| || |||||||||||| |||||
Sbjct: 156807 atggaaagcaaaaaaaaaaaaaaggtcaactaaaaa 156842
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>emb|BX323992.9| Zebrafish DNA sequence from clone DKEY-185B14 in linkage group 12,
             complete sequence
          Length = 153572

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 71    caaatcaaccaaaaattgtt 90
             ||||||||||||||||||||
Sbjct: 48507 caaatcaaccaaaaattgtt 48488
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>gb|AC008829.7| Homo sapiens chromosome 5 clone CTD-2140K22, complete sequence
          Length = 159145

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 76     caaccaaaaattgttttact 95
              ||||||||||||||||||||
Sbjct: 143015 caaccaaaaattgttttact 143034
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>dbj|AK031002.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830485N12 product:similar to Protein
           C20orf24 (Rab5-interacting protein) (RIP5) (PNAS-11)
           [Homo sapiens], full insert sequence
          Length = 2005

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 211 ccaaaacaacaaaaaggtca 230
           ||||||||||||||||||||
Sbjct: 906 ccaaaacaacaaaaaggtca 887
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>emb|AL929238.22| Mouse DNA sequence from clone RP23-480I16 on chromosome 2, complete
             sequence
          Length = 174226

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 140   agaaaaccaacttacacata 159
             ||||||||||||||||||||
Sbjct: 14949 agaaaaccaacttacacata 14968
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>emb|BX248130.8| Zebrafish DNA sequence from clone CH211-236E5 in linkage group 1,
              complete sequence
          Length = 183058

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 392    acacacctgaaagcaggcaa 411
              ||||||||||||||||||||
Sbjct: 145464 acacacctgaaagcaggcaa 145483
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>gb|AC068129.6| Homo sapiens BAC clone RP11-619F9 from 2, complete sequence
          Length = 150646

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 215   aacaacaaaaaggtcaacca 234
             ||||||||||||||||||||
Sbjct: 44400 aacaacaaaaaggtcaacca 44419
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>gb|AC016622.5|AC016622 Homo sapiens chromosome 5 clone CTD-2343F18, complete sequence
          Length = 110085

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    caaccaaaaattgttttact 95
             ||||||||||||||||||||
Sbjct: 74126 caaccaaaaattgttttact 74107
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>gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O16, complete sequence
          Length = 141894

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    caaccaaaaattgttttact 95
             ||||||||||||||||||||
Sbjct: 98121 caaccaaaaattgttttact 98102
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>emb|AL953916.14| Zebrafish DNA sequence from clone CH211-246I7 in linkage group 12,
              complete sequence
          Length = 177468

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 71     caaatcaaccaaaaattgtt 90
              ||||||||||||||||||||
Sbjct: 107923 caaatcaaccaaaaattgtt 107942
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>emb|BX005450.9| Zebrafish DNA sequence from clone CH211-150O23, complete sequence
          Length = 164218

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 170    ataattaatcgaaatccctt 189
              ||||||||||||||||||||
Sbjct: 160378 ataattaatcgaaatccctt 160359
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>emb|BX119907.8| Zebrafish DNA sequence from clone CH211-208D14 in linkage group 6,
             complete sequence
          Length = 181060

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   aaaacaacaaaaaggtcaac 232
             ||||||||||||||||||||
Sbjct: 24478 aaaacaacaaaaaggtcaac 24459
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>emb|AL806515.7| Mouse DNA sequence from clone RP23-434M18 on chromosome X, complete
              sequence
          Length = 125394

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 104    caagaatgatgctgcaacaa 123
              ||||||||||||||||||||
Sbjct: 115520 caagaatgatgctgcaacaa 115539
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>emb|CR854912.18| Zebrafish DNA sequence from clone DKEY-39O12 in linkage group 6,
             complete sequence
          Length = 170067

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   aaaacaacaaaaaggtcaac 232
             ||||||||||||||||||||
Sbjct: 11246 aaaacaacaaaaaggtcaac 11265
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>emb|AL935150.10| Mouse DNA sequence from clone RP24-482A24 on chromosome 2, complete
             sequence
          Length = 163240

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   ccaaaacaacaaaaaggtca 230
             ||||||||||||||||||||
Sbjct: 91724 ccaaaacaacaaaaaggtca 91705
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>emb|AL845468.4| Mouse DNA sequence from clone RP23-67E6 on chromosome 2, complete
             sequence
          Length = 217609

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 104   caagaatgatgctgcaacaa 123
             ||||||||||||||||||||
Sbjct: 48422 caagaatgatgctgcaacaa 48441


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,912,178
Number of Sequences: 3902068
Number of extensions: 4912178
Number of successful extensions: 99527
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99313
Number of HSP's gapped (non-prelim): 213
length of query: 427
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 405
effective length of database: 17,147,199,772
effective search space: 6944615907660
effective search space used: 6944615907660
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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