>VAMP2_RAT (P63045) Vesicle-associated membrane protein 2 (VAMP-2)|
           (Synaptobrevin-2)
          Length = 115

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = -1

Query: 269 SSRGSRIPPKLPAGTGTPEAEDPDGT------QLAWQYDEETDRLYVN 144
           S+  + +PP  PAG G P A  P+ T      Q   Q DE  D + VN
Sbjct: 1   SATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVN 48

>VAMP2_MOUSE (P63044) Vesicle-associated membrane protein 2 (VAMP-2)|
           (Synaptobrevin-2)
          Length = 115

 Score = 29.6 bits (65), Expect = 3.9
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = -1

Query: 269 SSRGSRIPPKLPAGTGTPEAEDPDGT------QLAWQYDEETDRLYVN 144
           S+  + +PP  PAG G P A  P+ T      Q   Q DE  D + VN
Sbjct: 1   SATAATVPPAAPAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVN 48

>HIS2_BACTN (Q8A7Z7) Histidine biosynthesis bifunctional protein hisIE|
           [Includes: Phosphoribosyl-AMP cyclohydrolase (EC
           3.5.4.19) (PRA-CH); Phosphoribosyl-ATP pyrophosphatase
           (EC 3.6.1.31) (PRA-PH)]
          Length = 203

 Score = 29.3 bits (64), Expect = 5.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 120 DHGSVLWIVHVKAICLLVVLPRQLGAVGILCLWGTCTCW 236
           + G+ L +V +KA C    L  Q    G +C  GT TCW
Sbjct: 60  ESGNFLHVVSIKADCDNDTLLIQADPAGPVCHTGTDTCW 98

>NEF_SIVML (P11262) Nef protein (Negative factor) (F-protein) (3'ORF)|
          Length = 262

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -1

Query: 221 TPEAEDPDGTQLAWQYDEE---TDRLYVNYPED 132
           T + +DP G  LAW++D     T   YV YPE+
Sbjct: 199 TSKWDDPWGEVLAWKFDPTPAYTYEAYVRYPEE 231

>NEF_SIVM1 (P05862) Nef protein (Negative factor) (F-protein) (3'ORF)|
          Length = 261

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = -1

Query: 221 TPEAEDPDGTQLAWQYDEE---TDRLYVNYPED 132
           T + +DP G  LAW++D     T   Y+ YPE+
Sbjct: 198 TSQWDDPWGEVLAWKFDPTLAYTYEAYIRYPEE 230


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,494,339
Number of Sequences: 219361
Number of extensions: 1112291
Number of successful extensions: 2626
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2625
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)