ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30e07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, ... 690 0.0
2gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic prote... 396 e-107
3gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 240 3e-60
4gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retr... 50 0.006
5gb|AY375391.1| Triticum monococcum clone pTm4-P1 A-genome repeti... 48 0.025
6gb|CP000316.1| Polaromonas sp. JS666, complete genome 44 0.40
7gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones B... 42 1.6
8gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, comple... 42 1.6
9gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC cl... 42 1.6
10gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotra... 42 1.6
11gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long term... 42 1.6
12dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 42 1.6
13gb|AC084200.22| Homo sapiens 12q BAC RP11-654D12 (Roswell Park C... 42 1.6
14emb|AL591911.8| Mouse DNA sequence from clone RP23-216D20 on chr... 42 1.6
15gb|AC113590.11| Mus musculus chromosome 5, clone RP23-277L17, co... 40 6.2
16emb|AL445487.8| Human DNA sequence from clone RP11-417L14 on chr... 40 6.2
17emb|CR543861.1| Acinetobacter sp. ADP1 complete genome 40 6.2
18emb|BX927149.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 6.2
19gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A1... 40 6.2
20gb|AC158126.7| Mus musculus chromosome 5, clone RP24-220P21, com... 40 6.2
21dbj|AK084327.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN ... 40 6.2
22dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.2
23dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 6.2
24gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.2
25emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb... 40 6.2 
>gb|AY661558.1| Hordeum vulgare subsp. vulgare eIF4E gene locus, complete sequence
          Length = 439641

 Score =  690 bits (348), Expect = 0.0
 Identities = 424/448 (94%), Gaps = 1/448 (0%)
 Strand = Plus / Minus

                                                                         
Query: 7     aactgtctccttattaaagatacagagtacaacgcagatacaaacaaggtagttccggta 66
             |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 74910 aactgtcttcttattaaaaatacagagtacaacgcagatacaaacaaggtagttccggta 74851

                                                                         
Query: 67    cggactacaaaacaagggaaatgctatgctacccgctgcaggcccacgatcacgaccacg 126
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 74850 cggactacaaaacaagggaaatgctatgctacccgctgcaggcccacgatcacaaccacg 74791

                                                                         
Query: 127   gctcagtcctctggatagttcacgtaaaggcgatctgtctcctcgtcgtactgccacgcc 186
             ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 74790 gctcagtcctctggatagttcacataaaggcgatctgtctcctcgtcgtactgccacgcc 74731

                                                                         
Query: 187   agctgggtgccgtcgggatcctctgcctctggggtacctgtacctgctggaagtttcgga 246
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 74730 agctgggtgccgtcgggatcctctgcctctggggtacctgtgcctgctggaagtttcgga 74671

                                                                         
Query: 247   ggaatccgtgagccacgggaactcagcaatctaagaccttggtgccagacctagtcatgt 306
             ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 74670 ggaatccgtgagccacggggactcagcaatctaaggccttggtgccagatctagtcatgt 74611

                                                                         
Query: 307   taatgggtaaggaagggatgaagtgtttccggctgctgcatcctaagattgaataagtgg 366
             ||||||| ||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 74610 taatgggcaaggaaggggtgaagtgtttcaggctgctgcatcctaaggttgaataagtgg 74551

                                                                         
Query: 367   ctagcttacgcaaaggggataatgacaatggtataagctaacgatcgagaacacttgatc 426
             |||||||||||||||| || | ||||| || | ||  |||||||||| ||| |||||| |
Sbjct: 74550 ctagcttacgcaaaggaga-agtgacagtgttctatactaacgatcgtgaatacttgaac 74492

                                         
Query: 427   agaaagtgatcctggacacctacctacg 454
             |||||||||||||| |||||||||||||
Sbjct: 74491 agaaagtgatcctgaacacctacctacg 74464



 Score =  690 bits (348), Expect = 0.0
 Identities = 424/448 (94%), Gaps = 1/448 (0%)
 Strand = Plus / Minus

                                                                         
Query: 7     aactgtctccttattaaagatacagagtacaacgcagatacaaacaaggtagttccggta 66
             |||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 64105 aactgtcttcttattaaaaatacagagtacaacgcagatacaaacaaggtagttccggta 64046

                                                                         
Query: 67    cggactacaaaacaagggaaatgctatgctacccgctgcaggcccacgatcacgaccacg 126
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64045 cggactacaaaacaagggaaatgctatgctacccgctgcaggcccacgatcacgaccacg 63986

                                                                         
Query: 127   gctcagtcctctggatagttcacgtaaaggcgatctgtctcctcgtcgtactgccacgcc 186
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63985 gctcagtcctatggatagttcacgtaaaggcgatctgtctcctcgtcgtactgccacgcc 63926

                                                                         
Query: 187   agctgggtgccgtcgggatcctctgcctctggggtacctgtacctgctggaagtttcgga 246
             ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 63925 agctgggtgccgtcgggatcctctgcctctggggtacctgtgcctgctggaagtttcgga 63866

                                                                         
Query: 247   ggaatccgtgagccacgggaactcagcaatctaagaccttggtgccagacctagtcatgt 306
             ||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||||||
Sbjct: 63865 ggaatccgtgagccacggggactcagcaatctaaggccttggtgccagatctagtcatgt 63806

                                                                         
Query: 307   taatgggtaaggaagggatgaagtgtttccggctgctgcatcctaagattgaataagtgg 366
             ||||||| ||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||
Sbjct: 63805 taatgggcaaggaaggggtgaagtgtttcaggctgttgcatcctaaggttgaataagtgg 63746

                                                                         
Query: 367   ctagcttacgcaaaggggataatgacaatggtataagctaacgatcgagaacacttgatc 426
             |||||||||||||||| || | ||||| || | ||  |||||||||| ||| |||||| |
Sbjct: 63745 ctagcttacgcaaaggaga-agtgacagtgttctatactaacgatcgtgaatacttgaac 63687

                                         
Query: 427   agaaagtgatcctggacacctacctacg 454
             |||||||||||||| |||||||||||||
Sbjct: 63686 agaaagtgatcctgaacacctacctacg 63659



 Score =  157 bits (79), Expect = 4e-35
 Identities = 172/202 (85%), Gaps = 2/202 (0%)
 Strand = Plus / Plus

                                                                          
Query: 107    ggcccacgatcacgaccacggctcagtcctctggatagttcacgtaaaggcgatctgtct 166
              |||||| ||||||||||| | || | || ||||||||| ||||||| ||| | || ||||
Sbjct: 158877 ggcccatgatcacgaccatgcctgaatcgtctggatagctcacgtacaggtggtcggtct 158936

                                                                          
Query: 167    cctcgtcgtactgccacgccagctgggtgccgtcgggatcctctgcctctggggtacctg 226
              ||||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||||
Sbjct: 158937 cctcgtcgtactgccacgccagctgcgtgccgtcgggatcaactgcctctggggtacctg 158996

                                                                          
Query: 227    tacctgctggaagtttcggaggaatccgtgagccacgggaactcagcaatctaagacctt 286
               |||||  ||  |||  | || |||| |||||||||||| ||||||||||||| ||||| 
Sbjct: 158997 aacctgtggg--gttgtgaagtaatctgtgagccacggggactcagcaatctatgacctc 159054

                                    
Query: 287    ggtgccagacctagtcatgtta 308
              ||||||| | ||||||| ||||
Sbjct: 159055 ggtgccaaaactagtcaagtta 159076



 Score =  153 bits (77), Expect = 6e-34
 Identities = 225/268 (83%), Gaps = 6/268 (2%)
 Strand = Plus / Plus

                                                                          
Query: 44     atacaaacaaggtagttccggtacggactacaaaacaagggaaa-tgctatgctacccg- 101
              |||||| ||| ||||||| | ||||||||||||| || | |||| |||||||||||||  
Sbjct: 162075 atacaaccaaagtagttctgctacggactacaaa-catgagaaaatgctatgctaccctg 162133

                                                                          
Query: 102    -ctgcaggcccacgatcacgaccacggctcagtcctctggatagttcacgtaaaggcgat 160
               |||| |||||| ||||||||||||| |||| || | ||||||| ||||||| ||||| |
Sbjct: 162134 cctgctggcccatgatcacgaccacgcctcaatcatgtggatagctcacgtacaggcggt 162193

                                                                          
Query: 161    ctgtctcctcgtcgtactgccacgccagctgggtgccgtcgggatcctctgcctctgggg 220
              |||||||||| |||||||||||||||||||| ||||| ||| ||||  ||| |||| | |
Sbjct: 162194 ctgtctcctcatcgtactgccacgccagctgcgtgccatcgcgatcaactgtctctcgag 162253

                                                                          
Query: 221    tacctgtacctgctggaagtttcggaggaatccgtgagccacgggaactcagcaatctaa 280
              |||||| ||||| |||  |||  | ||||||| |||||||||||| ||||||||||||| 
Sbjct: 162254 tacctgaacctg-tgg-tgttgtgaaggaatctgtgagccacggggactcagcaatctac 162311

                                          
Query: 281    gaccttggtgccagacctagtcatgtta 308
              |||||  |||||||| ||||||| ||||
Sbjct: 162312 gacctctgtgccagaactagtcaagtta 162339



 Score =  141 bits (71), Expect = 2e-30
 Identities = 170/202 (84%), Gaps = 2/202 (0%)
 Strand = Plus / Plus

                                                                          
Query: 107    ggcccacgatcacgaccacggctcagtcctctggatagttcacgtaaaggcgatctgtct 166
              |||||| ||||||||||| | || | || ||||||||| ||||||| ||| | || ||||
Sbjct: 181937 ggcccatgatcacgaccatgcctgaatcgtctggatagctcacgtacaggtggtcggtct 181996

                                                                          
Query: 167    cctcgtcgtactgccacgccagctgggtgccgtcgggatcctctgcctctggggtacctg 226
              |||||||||||||||||||||| || ||||| ||||||||  ||||||||||||||||||
Sbjct: 181997 cctcgtcgtactgccacgccagttgtgtgccatcgggatcaactgcctctggggtacctg 182056

                                                                          
Query: 227    tacctgctggaagtttcggaggaatccgtgagccacgggaactcagcaatctaagacctt 286
               |||||  ||  |||  | || |||| |||||||||||| ||||||||||||| ||||| 
Sbjct: 182057 aacctgtggg--gttgtgaagtaatctgtgagccacggggactcagcaatctatgacctc 182114

                                    
Query: 287    ggtgccagacctagtcatgtta 308
              ||||||| | ||||||| ||||
Sbjct: 182115 ggtgccaaaactagtcaagtta 182136



 Score =  131 bits (66), Expect = 2e-27
 Identities = 170/202 (84%), Gaps = 2/202 (0%)
 Strand = Plus / Plus

                                                                          
Query: 102    ctgcaggcccacgatcacgaccacggctcagtcctctggatagttcacgtaaaggcgatc 161
              |||| |||||| ||||| ||||||| |||| || | ||||||| ||||||| ||||| ||
Sbjct: 114358 ctgctggcccatgatcaggaccacgcctcaatcgtgtggatagctcacgtacaggcggtc 114417

                                                                          
Query: 162    tgtctcctcgtcgtactgccacgccagctgggtgccgtcgggatcctctgcctctggggt 221
              ||||||||| |||||||||||||||||||| ||||| ||| ||||  ||| |||| | ||
Sbjct: 114418 tgtctcctcatcgtactgccacgccagctgcgtgccatcgcgatcaactgtctctcgagt 114477

                                                                          
Query: 222    acctgtacctgctggaagtttcggaggaatccgtgagccacgggaactcagcaatctaag 281
              ||||| ||||| |||  |||  | ||||||| |||||||||||| ||||||||||||| |
Sbjct: 114478 acctgaacctg-tgg-tgttgtgaaggaatctgtgagccacggggactcagcaatctacg 114535

                                    
Query: 282    accttggtgccagacctagtca 303
              ||||  |||||||| |||||||
Sbjct: 114536 acctctgtgccagaactagtca 114557



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                     
Query: 419    acttgatcagaaagtgatcctggacacctacctacgtca 457
              |||||||||  ||||||||||| ||||||||||||||||
Sbjct: 182245 acttgatcactaagtgatcctgaacacctacctacgtca 182283



 Score = 48.1 bits (24), Expect = 0.025
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                          
Query: 430    aagtgatcctggacacctacctacgtca 457
              ||||||||||| ||||||||||||||||
Sbjct: 159196 aagtgatcctgaacacctacctacgtca 159223



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 433    tgatcctggacacctacctacgtca 457
              |||||||| ||||||||||||||||
Sbjct: 326703 tgatcctgaacacctacctacgtca 326679



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 433    tgatcctggacacctacctacgtca 457
              |||||||| ||||||||||||||||
Sbjct: 178463 tgatcctgaacacctacctacgtca 178439



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 433    tgatcctggacacctacctacgtca 457
              |||||||| ||||||||||||||||
Sbjct: 131105 tgatcctgaacacctacctacgtca 131081
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>gb|AF254799.1|AF254799 Hordeum vulgare tonoplast intrinsic protein 1 (TIP1), tonoplast
             intrinsic protein 2 (TIP2), and Rar1 (Rar1) genes,
             complete cds
          Length = 65979

 Score =  396 bits (200), Expect = e-107
 Identities = 315/351 (89%), Gaps = 3/351 (0%)
 Strand = Plus / Minus

                                                                         
Query: 29    cagagtacaacgcagatacaaacaaggtagttccggtacggactacaaaacaagggaaat 88
             ||||||||| | ||||||||| ||||||||||||| |||||||||||||||| || ||||
Sbjct: 27418 cagagtacatcacagatacaatcaaggtagttccgctacggactacaaaacatgg-aaat 27360

                                                                         
Query: 89    gctatgctacccg--ctgcaggcccacgatcacgaccacggctcagtcctctggatagtt 146
             |||||||||||    ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 27359 gctatgctaccgtgcctgcaggcccacgatcacgaccacgcctcagtcctctggatagtt 27300

                                                                         
Query: 147   cacgtaaaggcgatctgtctcctcgtcgtactgccacgccagctgggtgccgtcgggatc 206
             |||||  ||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 27299 cacgtcgaggcggtctgtctcctcgtcgtactgccacgccagctgagtgccgtcgggatc 27240

                                                                         
Query: 207   ctctgcctctggggtacctgtacctgctggaagtttcggaggaatccgtgagccacggga 266
              |||| ||||||||||||||||| || ||| |||||||||||||||||||||||||||| 
Sbjct: 27239 atctgtctctggggtacctgtacttgttgggagtttcggaggaatccgtgagccacgggg 27180

                                                                         
Query: 267   actcagcaatctaagaccttggtgccagacctagtcatgttaatgggtaaggaagggatg 326
             ||||||||||||||||||||||||||||| |||||||||||| | |||| || | || ||
Sbjct: 27179 actcagcaatctaagaccttggtgccagaactagtcatgttattaggtagggtaagggtg 27120

                                                                
Query: 327   aagtgtttccggctgctgcatcctaagattgaataagtggctagcttacgc 377
             |||||| |  ||||||  ||||||||| |||| |||||||||| |||||||
Sbjct: 27119 aagtgtataaggctgcatcatcctaagcttgattaagtggctatcttacgc 27069



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 39/43 (90%)
 Strand = Plus / Minus

                                                        
Query: 419   acttgatcagaaagtgatcctggacacctacctacgtcattca 461
             |||||||||  ||||||||||| ||||||||||||| ||||||
Sbjct: 27028 acttgatcactaagtgatcctgaacacctacctacggcattca 26986



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 433   tgatcctggacacctacctacgtca 457
             |||||||| ||||||||||||||||
Sbjct: 10618 tgatcctgaacacctacctacgtca 10594
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>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score =  240 bits (121), Expect = 3e-60
 Identities = 225/256 (87%), Gaps = 4/256 (1%)
 Strand = Plus / Plus

                                                                          
Query: 55     gtagttccggtacggactacaaaacaagggaaatgctatgctacccg--ctgcaggccca 112
              ||||||||| ||||||||||||||||  | ||| ||||||||||||   |||||||||||
Sbjct: 110543 gtagttccgctacggactacaaaacatag-aaaggctatgctaccctgcctgcaggccca 110601

                                                                          
Query: 113    cgatcacgaccacggctcagtcctctggatagttcacgtaaaggcgatctgtctcctcgt 172
              |||||||||||||| |||| || ||||||||||||||||| | ||| ||||||||||| |
Sbjct: 110602 cgatcacgaccacgcctcaatcttctggatagttcacgtacatgcggtctgtctcctcat 110661

                                                                          
Query: 173    cgtactgccacgccagctgggtgccgtcgggatcctctgcctctggggtacctgtacctg 232
              ||||||||||||||||||| |||||||||||||| |||| |||||||||||||| |||| 
Sbjct: 110662 cgtactgccacgccagctgcgtgccgtcgggatcatctgtctctggggtacctgaaccta 110721

                                                                          
Query: 233    ctggaagtttcggaggaatccgtgagccacgggaactcagcaatctaagaccttggtgcc 292
               ||| | ||  | ||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 110722 ttggta-ttgtgaaggaatccgtgagccgcggggactcaacaatctaagaccttggtgcc 110780

                              
Query: 293    agacctagtcatgtta 308
              ||| ||||||| ||||
Sbjct: 110781 agaactagtcaagtta 110796



 Score =  240 bits (121), Expect = 3e-60
 Identities = 225/256 (87%), Gaps = 4/256 (1%)
 Strand = Plus / Plus

                                                                         
Query: 55    gtagttccggtacggactacaaaacaagggaaatgctatgctacccg--ctgcaggccca 112
             ||||||||| ||||||||||||||||  | ||| ||||||||||||   |||||||||||
Sbjct: 70828 gtagttccgctacggactacaaaacatag-aaaggctatgctaccctgcctgcaggccca 70886

                                                                         
Query: 113   cgatcacgaccacggctcagtcctctggatagttcacgtaaaggcgatctgtctcctcgt 172
             |||||||||||||| |||| || ||||||||||||||||| | ||| ||||||||||| |
Sbjct: 70887 cgatcacgaccacgcctcaatcttctggatagttcacgtacatgcggtctgtctcctcat 70946

                                                                         
Query: 173   cgtactgccacgccagctgggtgccgtcgggatcctctgcctctggggtacctgtacctg 232
             ||||||||||||||||||| |||||||||||||| |||| |||||||||||||| |||| 
Sbjct: 70947 cgtactgccacgccagctgcgtgccgtcgggatcatctgtctctggggtacctgaaccta 71006

                                                                         
Query: 233   ctggaagtttcggaggaatccgtgagccacgggaactcagcaatctaagaccttggtgcc 292
              ||| | ||  | ||||||||||||||| |||| ||||| ||||||||||||||||||||
Sbjct: 71007 ttggta-ttgtgaaggaatccgtgagccgcggggactcaacaatctaagaccttggtgcc 71065

                             
Query: 293   agacctagtcatgtta 308
             ||| ||||||| ||||
Sbjct: 71066 agaactagtcaagtta 71081



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                              
Query: 430    aagtgatcctggacacctacctacgtcattca 461
              ||||||||||| ||||||||||||||||||||
Sbjct: 110916 aagtgatcctgaacacctacctacgtcattca 110947



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 31/32 (96%)
 Strand = Plus / Plus

                                             
Query: 430   aagtgatcctggacacctacctacgtcattca 461
             ||||||||||| ||||||||||||||||||||
Sbjct: 71201 aagtgatcctgaacacctacctacgtcattca 71232
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>gb|AY054380.1| Hordeum patagonicum clone HpaLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7731

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 246  aggaatccgtgagccacgggaactcagcaatct 278
            ||||||| |||||||||||| ||||||||||||
Sbjct: 4052 aggaatctgtgagccacggggactcagcaatct 4020
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>gb|AY375391.1| Triticum monococcum clone pTm4-P1 A-genome repetitive DNA sequence
          Length = 3244

 Score = 48.1 bits (24), Expect = 0.025
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 239  gtttcggaggaatccgtgagccacgggaactcagcaatct 278
            |||||||| | ||| |||||||||||| ||||||||||||
Sbjct: 2268 gtttcggaagtatctgtgagccacggggactcagcaatct 2229
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>gb|CP000316.1| Polaromonas sp. JS666, complete genome
          Length = 5200264

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 105     caggcccacgatcacgaccacg 126
               ||||||||||||||||||||||
Sbjct: 3726256 caggcccacgatcacgaccacg 3726277
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>gb|AY643843.1|AY643842S2 Hordeum vulgare subsp. vulgare clones BAC 519K7 and 799C8 hardness
             locus region
          Length = 129099

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 433   tgatcctggacacctacctacgtca 457
             |||||||| ||||||||||||||||
Sbjct: 68603 tgatcctgaacacctacctacgtca 68627
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>gb|AF474373.1| Hordeum vulgare subsp. vulgare BAC 259I16, complete sequence
          Length = 124050

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 433   tgatcctggacacctacctacgtca 457
             |||||||| ||||||||||||||||
Sbjct: 65305 tgatcctgaacacctacctacgtca 65329
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>gb|AF474072.1| Hordeum vulgare sp. vulgare cultivar Morex BAC clone 773k14, complete
             sequence
          Length = 113510

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 433   tgatcctggacacctacctacgtca 457
             |||||||| ||||||||||||||||
Sbjct: 16834 tgatcctgaacacctacctacgtca 16858
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>gb|AY054379.1| Hordeum murinum clone HmuLTR-INS Sukkula retrotransposon long
            terminal repeat, complete sequence
          Length = 7586

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 246  aggaatccgtgagccacgggaactcagcaatct 278
            ||||||| |||||||||||| ||||| ||||||
Sbjct: 3850 aggaatctgtgagccacggggactcaacaatct 3818
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>gb|AY054376.1| Hordeum vulgare Sukkula retrotransposon long terminal repeat, partial
             and complete sequences
          Length = 11820

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 433   tgatcctggacacctacctacgtca 457
             |||||||| ||||||||||||||||
Sbjct: 11276 tgatcctgaacacctacctacgtca 11252
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 182    acgccagctgggtgccgtcgg 202
              |||||||||||||||||||||
Sbjct: 689425 acgccagctgggtgccgtcgg 689405
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>gb|AC084200.22| Homo sapiens 12q BAC RP11-654D12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 191886

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 304   tgttaatgggtaaggaaggga 324
             |||||||||||||||||||||
Sbjct: 17340 tgttaatgggtaaggaaggga 17360
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>emb|AL591911.8| Mouse DNA sequence from clone RP23-216D20 on chromosome 2, complete
             sequence
          Length = 120937

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 206   cctctgcctctggggtacctg 226
             |||||||||||||||||||||
Sbjct: 50589 cctctgcctctggggtacctg 50569
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>gb|AC113590.11| Mus musculus chromosome 5, clone RP23-277L17, complete sequence
          Length = 171727

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     ttaaagatacagagtacaac 39
              ||||||||||||||||||||
Sbjct: 157361 ttaaagatacagagtacaac 157380
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>emb|AL445487.8| Human DNA sequence from clone RP11-417L14 on chromosome 9 Contains a
             karyopherin alpha 2 (RAG cohort 1, importin alpha 1)
             (KPNA2) pseudogene, complete sequence
          Length = 112031

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 419   acttgatcagaaagtgatcc 438
             ||||||||||||||||||||
Sbjct: 80168 acttgatcagaaagtgatcc 80149
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>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome
          Length = 3598621

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 221    tacctgtacctgctggaagt 240
              ||||||||||||||||||||
Sbjct: 300479 tacctgtacctgctggaagt 300460
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>emb|BX927149.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5,
             complete genome; segment 2/10
          Length = 349887

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 123   cacggctcagtcctctggat 142
             ||||||||||||||||||||
Sbjct: 44954 cacggctcagtcctctggat 44973
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>gb|AY188331.1| Triticum monococcum DV92 chromosome 5AL BAC 231A16, complete sequence
          Length = 133625

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 255   tgagccacgggaactcagcaatct 278
             ||||||||||| ||||||||||||
Sbjct: 84546 tgagccacggggactcagcaatct 84569
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>gb|AC158126.7| Mus musculus chromosome 5, clone RP24-220P21, complete sequence
          Length = 166888

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     ttaaagatacagagtacaac 39
              ||||||||||||||||||||
Sbjct: 107603 ttaaagatacagagtacaac 107622
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>dbj|AK084327.1| Mus musculus 12 days embryo eyeball cDNA, RIKEN full-length
           enriched library, clone:D230023O03
           product:unclassifiable, full insert sequence
          Length = 2378

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 20  ttaaagatacagagtacaac 39
           ||||||||||||||||||||
Sbjct: 208 ttaaagatacagagtacaac 189
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 164      tctcctcgtcgtactgccacgcca 187
                ||||||||||||||| ||||||||
Sbjct: 18406303 tctcctcgtcgtactcccacgcca 18406326
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>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 123    cacggctcagtcctctggat 142
              ||||||||||||||||||||
Sbjct: 392975 cacggctcagtcctctggat 392994
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 164      tctcctcgtcgtactgccacgcca 187
                ||||||||||||||| ||||||||
Sbjct: 18332529 tctcctcgtcgtactcccacgcca 18332552
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>emb|AL845344.4|CNS08CB6 Oryza sativa chromosome 12, . BAC OSJNBb0108O14 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 138585

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 164   tctcctcgtcgtactgccacgcca 187
             ||||||||||||||| ||||||||
Sbjct: 58202 tctcctcgtcgtactcccacgcca 58225


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,216,696
Number of Sequences: 3902068
Number of extensions: 3216696
Number of successful extensions: 51825
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 51653
Number of HSP's gapped (non-prelim): 164
length of query: 461
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 439
effective length of database: 17,147,199,772
effective search space: 7527620699908
effective search space used: 7527620699908
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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