ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl30e06 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_468773.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3546 Score = 131 bits (66), Expect = 2e-27 Identities = 186/226 (82%) Strand = Plus / Minus Query: 210 ttctcgtcttgagcagcagccggcttggattcctcgttcatcttccggaagacaagcttc 269 |||||||||| ||||||||| || |||||| || |||| || |||| || ||||| Sbjct: 3155 ttctcgtcttcagcagcagctggtgcggattcttcactcattttgtggaaaacgagcttt 3096 Query: 270 tgctgggggagctgtccgttcgacggcaccgtcacctgagtgtcgacggagatgctgtcc 329 ||||| |||||||| || || || ||||| || ||||| ||||| || |||||||||| Sbjct: 3095 tgctgagggagctgaccattagatggcacggtgacctgggtgtctaccaggatgctgtcc 3036 Query: 330 tcgtccttgaactcgcctctgaggatacccttggccagttcattctccacgtactgctgg 389 ||||||||||| || ||||| ||||||||||| ||||| || |||||||| ||||| || Sbjct: 3035 tcgtccttgaaatcacctctcaggatacccttcgccagctcgttctccacatactgttga 2976 Query: 390 agcactcgcttcactggcctggcaccgtagttggggtcgtagccaa 435 | ||||||||||||||||||||||||||| || || ||||| |||| Sbjct: 2975 atcactcgcttcactggcctggcaccgtaattcggatcgtaaccaa 2930
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 131 bits (66), Expect = 2e-27 Identities = 186/226 (82%) Strand = Plus / Minus Query: 210 ttctcgtcttgagcagcagccggcttggattcctcgttcatcttccggaagacaagcttc 269 |||||||||| ||||||||| || |||||| || |||| || |||| || ||||| Sbjct: 17651152 ttctcgtcttcagcagcagctggtgcggattcttcactcattttgtggaaaacgagcttt 17651093 Query: 270 tgctgggggagctgtccgttcgacggcaccgtcacctgagtgtcgacggagatgctgtcc 329 ||||| |||||||| || || || ||||| || ||||| ||||| || |||||||||| Sbjct: 17651092 tgctgagggagctgaccattagatggcacggtgacctgggtgtctaccaggatgctgtcc 17651033 Query: 330 tcgtccttgaactcgcctctgaggatacccttggccagttcattctccacgtactgctgg 389 ||||||||||| || ||||| ||||||||||| ||||| || |||||||| ||||| || Sbjct: 17651032 tcgtccttgaaatcacctctcaggatacccttcgccagctcgttctccacatactgttga 17650973 Query: 390 agcactcgcttcactggcctggcaccgtagttggggtcgtagccaa 435 | ||||||||||||||||||||||||||| || || ||||| |||| Sbjct: 17650972 atcactcgcttcactggcctggcaccgtaattcggatcgtaaccaa 17650927
>gb|AC137999.2| Oryza sativa chromosome 3 BAC OSJNBa0020H02 genomic sequence, complete sequence Length = 97152 Score = 131 bits (66), Expect = 2e-27 Identities = 186/226 (82%) Strand = Plus / Plus Query: 210 ttctcgtcttgagcagcagccggcttggattcctcgttcatcttccggaagacaagcttc 269 |||||||||| ||||||||| || |||||| || |||| || |||| || ||||| Sbjct: 3925 ttctcgtcttcagcagcagctggtgcggattcttcactcattttgtggaaaacgagcttt 3984 Query: 270 tgctgggggagctgtccgttcgacggcaccgtcacctgagtgtcgacggagatgctgtcc 329 ||||| |||||||| || || || ||||| || ||||| ||||| || |||||||||| Sbjct: 3985 tgctgagggagctgaccattagatggcacggtgacctgggtgtctaccaggatgctgtcc 4044 Query: 330 tcgtccttgaactcgcctctgaggatacccttggccagttcattctccacgtactgctgg 389 ||||||||||| || ||||| ||||||||||| ||||| || |||||||| ||||| || Sbjct: 4045 tcgtccttgaaatcacctctcaggatacccttcgccagctcgttctccacatactgttga 4104 Query: 390 agcactcgcttcactggcctggcaccgtagttggggtcgtagccaa 435 | ||||||||||||||||||||||||||| || || ||||| |||| Sbjct: 4105 atcactcgcttcactggcctggcaccgtaattcggatcgtaaccaa 4150
>gb|AC133398.4| Oryza sativa chromosome 3 BAC OSJNBa0083F15 genomic sequence, complete sequence Length = 136916 Score = 131 bits (66), Expect = 2e-27 Identities = 186/226 (82%) Strand = Plus / Plus Query: 210 ttctcgtcttgagcagcagccggcttggattcctcgttcatcttccggaagacaagcttc 269 |||||||||| ||||||||| || |||||| || |||| || |||| || ||||| Sbjct: 132855 ttctcgtcttcagcagcagctggtgcggattcttcactcattttgtggaaaacgagcttt 132914 Query: 270 tgctgggggagctgtccgttcgacggcaccgtcacctgagtgtcgacggagatgctgtcc 329 ||||| |||||||| || || || ||||| || ||||| ||||| || |||||||||| Sbjct: 132915 tgctgagggagctgaccattagatggcacggtgacctgggtgtctaccaggatgctgtcc 132974 Query: 330 tcgtccttgaactcgcctctgaggatacccttggccagttcattctccacgtactgctgg 389 ||||||||||| || ||||| ||||||||||| ||||| || |||||||| ||||| || Sbjct: 132975 tcgtccttgaaatcacctctcaggatacccttcgccagctcgttctccacatactgttga 133034 Query: 390 agcactcgcttcactggcctggcaccgtagttggggtcgtagccaa 435 | ||||||||||||||||||||||||||| || || ||||| |||| Sbjct: 133035 atcactcgcttcactggcctggcaccgtaattcggatcgtaaccaa 133080
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 131 bits (66), Expect = 2e-27 Identities = 186/226 (82%) Strand = Plus / Minus Query: 210 ttctcgtcttgagcagcagccggcttggattcctcgttcatcttccggaagacaagcttc 269 |||||||||| ||||||||| || |||||| || |||| || |||| || ||||| Sbjct: 17644693 ttctcgtcttcagcagcagctggtgcggattcttcactcattttgtggaaaacgagcttt 17644634 Query: 270 tgctgggggagctgtccgttcgacggcaccgtcacctgagtgtcgacggagatgctgtcc 329 ||||| |||||||| || || || ||||| || ||||| ||||| || |||||||||| Sbjct: 17644633 tgctgagggagctgaccattagatggcacggtgacctgggtgtctaccaggatgctgtcc 17644574 Query: 330 tcgtccttgaactcgcctctgaggatacccttggccagttcattctccacgtactgctgg 389 ||||||||||| || ||||| ||||||||||| ||||| || |||||||| ||||| || Sbjct: 17644573 tcgtccttgaaatcacctctcaggatacccttcgccagctcgttctccacatactgttga 17644514 Query: 390 agcactcgcttcactggcctggcaccgtagttggggtcgtagccaa 435 | ||||||||||||||||||||||||||| || || ||||| |||| Sbjct: 17644513 atcactcgcttcactggcctggcaccgtaattcggatcgtaaccaa 17644468
>dbj|AK069123.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007C17, full insert sequence Length = 3303 Score = 131 bits (66), Expect = 2e-27 Identities = 186/226 (82%) Strand = Plus / Minus Query: 210 ttctcgtcttgagcagcagccggcttggattcctcgttcatcttccggaagacaagcttc 269 |||||||||| ||||||||| || |||||| || |||| || |||| || ||||| Sbjct: 3155 ttctcgtcttcagcagcagctggtgcggattcttcactcattttgtggaaaacgagcttt 3096 Query: 270 tgctgggggagctgtccgttcgacggcaccgtcacctgagtgtcgacggagatgctgtcc 329 ||||| |||||||| || || || ||||| || ||||| ||||| || |||||||||| Sbjct: 3095 tgctgagggagctgaccattagatggcacggtgacctgggtgtctaccaggatgctgtcc 3036 Query: 330 tcgtccttgaactcgcctctgaggatacccttggccagttcattctccacgtactgctgg 389 ||||||||||| || ||||| ||||||||||| ||||| || |||||||| ||||| || Sbjct: 3035 tcgtccttgaaatcacctctcaggatacccttcgccagctcgttctccacatactgttga 2976 Query: 390 agcactcgcttcactggcctggcaccgtagttggggtcgtagccaa 435 | ||||||||||||||||||||||||||| || || ||||| |||| Sbjct: 2975 atcactcgcttcactggcctggcaccgtaattcggatcgtaaccaa 2930
>dbj|AK060637.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-D01, full insert sequence Length = 2290 Score = 131 bits (66), Expect = 2e-27 Identities = 186/226 (82%) Strand = Plus / Minus Query: 210 ttctcgtcttgagcagcagccggcttggattcctcgttcatcttccggaagacaagcttc 269 |||||||||| ||||||||| || |||||| || |||| || |||| || ||||| Sbjct: 2109 ttctcgtcttcagcagcagctggtgcggattcttcactcattttgtggaaaacgagcttt 2050 Query: 270 tgctgggggagctgtccgttcgacggcaccgtcacctgagtgtcgacggagatgctgtcc 329 ||||| |||||||| || || || ||||| || ||||| ||||| || |||||||||| Sbjct: 2049 tgctgagggagctgaccattagatggcacggtgacctgggtgtctaccaggatgctgtcc 1990 Query: 330 tcgtccttgaactcgcctctgaggatacccttggccagttcattctccacgtactgctgg 389 ||||||||||| || ||||| ||||||||||| ||||| || |||||||| ||||| || Sbjct: 1989 tcgtccttgaaatcacctctcaggatacccttcgccagctcgttctccacatactgttga 1930 Query: 390 agcactcgcttcactggcctggcaccgtagttggggtcgtagccaa 435 | ||||||||||||||||||||||||||| || || ||||| |||| Sbjct: 1929 atcactcgcttcactggcctggcaccgtaattcggatcgtaaccaa 1884
>gb|AY107812.1| Zea mays PCO119122 mRNA sequence Length = 696 Score = 121 bits (61), Expect = 2e-24 Identities = 195/239 (81%), Gaps = 3/239 (1%) Strand = Plus / Plus Query: 189 catcagactgtcggcaggaacttctcgtcttgagcagcagccggcttggattcctcgttc 248 |||||||| | ||||| |||||||||| ||| ||||||| ||||| |||| ||| | Sbjct: 368 catcagacagccggcaagaacttctcgcctt---cagcagcgggcttcgattgctcaccc 424 Query: 249 atcttccggaagacaagcttctgctgggggagctgtccgttcgacggcaccgtcacctga 308 | |||||||| || |||||||| || || ||||| ||||| || |||||||| ||||| Sbjct: 425 actttccggaaaactagcttctgttgcggaagctggccgttagagggcaccgtgacctgg 484 Query: 309 gtgtcgacggagatgctgtcctcgtccttgaactcgcctctgaggatacccttggccagt 368 ||||| || |||||||||||||||||||||| || ||||||||||| ||||| || ||| Sbjct: 485 gtgtccacaaagatgctgtcctcgtccttgaaatcacctctgaggatgcccttcgcgagt 544 Query: 369 tcattctccacgtactgctggagcactcgcttcactggcctggcaccgtagttggggtc 427 || |||||||||| ||| || | ||||| |||||| ||||| || || ||||| ||||| Sbjct: 545 tcgttctccacgtgctgttgaatcactctcttcaccggcctcgcgccatagttcgggtc 603
>dbj|AB219939.1| Lycopersicon esculentum LeHSP110/ClpB mRNA for heat shock protein, complete cds Length = 3144 Score = 50.1 bits (25), Expect = 0.006 Identities = 82/101 (81%) Strand = Plus / Minus Query: 327 tcctcgtccttgaactcgcctctgaggatacccttggccagttcattctccacgtactgc 386 ||||| |||||||| || ||||| | || || ||||||| ||| ||||| || | |||| Sbjct: 2831 tcctcatccttgaattctcctcttaatattcctttggccaattcgttctcaacattctgc 2772 Query: 387 tggagcactcgcttcactggcctggcaccgtagttggggtc 427 |||| ||| ||||||||||||| || || ||||||||||| Sbjct: 2771 tggatcacccgcttcactggccgtgctccatagttggggtc 2731
>emb|BX015981.1|CNS08KHT Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA24AA05 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 567 Score = 44.1 bits (22), Expect = 0.37 Identities = 28/30 (93%) Strand = Plus / Minus Query: 102 atatgcccaaagagatacactaccagttcg 131 ||||||||||||| |||||| ||||||||| Sbjct: 219 atatgcccaaagacatacacgaccagttcg 190
>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7 Length = 348764 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 374 ctccacgtactgctggagcac 394 ||||||||||||||||||||| Sbjct: 23702 ctccacgtactgctggagcac 23722
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 383 ctgctggagcactcgcttcactggcctggcaccgtagttggggtc 427 |||||||| ||| | |||||| ||||| ||||||||||| ||||| Sbjct: 4568010 ctgctggatcaccctcttcacaggcctagcaccgtagttagggtc 4568054
>dbj|AP004087.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1297_C09 Length = 163378 Score = 42.1 bits (21), Expect = 1.5 Identities = 39/45 (86%) Strand = Plus / Plus Query: 383 ctgctggagcactcgcttcactggcctggcaccgtagttggggtc 427 |||||||| ||| | |||||| ||||| ||||||||||| ||||| Sbjct: 103389 ctgctggatcaccctcttcacaggcctagcaccgtagttagggtc 103433
>ref|NM_128071.2| Arabidopsis thaliana ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding AT2G25140 mRNA, complete cds Length = 3223 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 392 cactcgcttcactggcctggcaccgtagttggggtc 427 |||||||||||| ||||| || |||||||| ||||| Sbjct: 2887 cactcgcttcaccggccttgccccgtagttagggtc 2852
>ref|XM_747822.1| Aspergillus fumigatus Af293 C6 transcription factor UaY (Afu1g15470) partial mRNA Length = 3267 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 gacaagcttctgctggggga 279 |||||||||||||||||||| Sbjct: 2437 gacaagcttctgctggggga 2418
>ref|XM_947841.1| Theileria annulata strain Ankara DEAD-box family helicase (TA07525) partial mRNA Length = 2274 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 97 ctatgatatgcccaaagagataca 120 |||||||||||||||||| ||||| Sbjct: 2046 ctatgatatgcccaaagacataca 2069
>gb|AY070722.1| Arabidopsis thaliana At2g25140/F13D4.100 mRNA, complete cds Length = 3223 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 392 cactcgcttcactggcctggcaccgtagttggggtc 427 |||||||||||| ||||| || |||||||| ||||| Sbjct: 2887 cactcgcttcaccggccttgccccgtagttagggtc 2852
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 gcaccgtcacctgagtgtcg 314 |||||||||||||||||||| Sbjct: 5414972 gcaccgtcacctgagtgtcg 5414953
>gb|AC096533.3| Homo sapiens chromosome 1 clone RP11-6B6, complete sequence Length = 163339 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 66 tggagcaaagaattctggct 85 |||||||||||||||||||| Sbjct: 98840 tggagcaaagaattctggct 98859
>gb|BT002223.1| Arabidopsis thaliana At2g25140/F13D4.100 mRNA, complete cds Length = 2895 Score = 40.1 bits (20), Expect = 5.8 Identities = 32/36 (88%) Strand = Plus / Minus Query: 392 cactcgcttcactggcctggcaccgtagttggggtc 427 |||||||||||| ||||| || |||||||| ||||| Sbjct: 2733 cactcgcttcaccggccttgccccgtagttagggtc 2698
>emb|CR759840.6| Zebrafish DNA sequence from clone DKEY-239O7 in linkage group 25, complete sequence Length = 110071 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 gggttgtcctgctgctaataatgt 60 ||||||| |||||||||||||||| Sbjct: 56225 gggttgttctgctgctaataatgt 56248
>emb|AL929309.6| Zebrafish DNA sequence from clone CH211-51L3 in linkage group 25, complete sequence Length = 191745 Score = 40.1 bits (20), Expect = 5.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 37 gggttgtcctgctgctaataatgt 60 ||||||| |||||||||||||||| Sbjct: 80560 gggttgttctgctgctaataatgt 80583 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,214,413 Number of Sequences: 3902068 Number of extensions: 3214413 Number of successful extensions: 54522 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54428 Number of HSP's gapped (non-prelim): 94 length of query: 435 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 413 effective length of database: 17,147,199,772 effective search space: 7081793505836 effective search space used: 7081793505836 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
