Clone Name | rbastl30e05 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_191989.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2100 Score = 188 bits (95), Expect = 1e-44 Identities = 185/213 (86%), Gaps = 4/213 (1%) Strand = Plus / Minus Query: 245 tcgcagtcgagcaagcgagtgaggaactcctggcagctcggccgatcttggggctctgcc 304 ||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||| Sbjct: 2084 tcgcagtcgagcaagcgggtaaggatctcctgacagctcggccgatcttggggctctgcc 2025 Query: 305 cagcaatctgcaattaacttgccaagaggcccttctggaatttcaagccccgacccttc- 363 || |||||||||||||||||||||||||| ||||| ||||| || |||| || ||||| Sbjct: 2024 caacaatctgcaattaacttgccaagaggtccttcaggaatctcgagccgtgaaccttcg 1965 Query: 364 --agtaactgcatacaccacttgaactggggcgatcccatcccatgggcgtcttaatgtg 421 | ||| | ||| |||||||||||||||| |||||||||||| || || || |||||| Sbjct: 1964 tttgcaacagtatataccacttgaactggggagatcccatcccaaggacgactcaatgtg 1905 Query: 422 cagagctcccacattatcacacc-aggctgaaa 453 || ||||||||||| |||||||| ||||||||| Sbjct: 1904 catagctcccacatgatcacaccaaggctgaaa 1872
>dbj|AK111983.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-H11, full insert sequence Length = 1632 Score = 188 bits (95), Expect = 1e-44 Identities = 185/213 (86%), Gaps = 4/213 (1%) Strand = Plus / Minus Query: 245 tcgcagtcgagcaagcgagtgaggaactcctggcagctcggccgatcttggggctctgcc 304 ||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||| Sbjct: 1270 tcgcagtcgagcaagcgggtaaggatctcctgacagctcggccgatcttggggctctgcc 1211 Query: 305 cagcaatctgcaattaacttgccaagaggcccttctggaatttcaagccccgacccttc- 363 || |||||||||||||||||||||||||| ||||| ||||| || |||| || ||||| Sbjct: 1210 caacaatctgcaattaacttgccaagaggtccttcaggaatctcgagccgtgaaccttcg 1151 Query: 364 --agtaactgcatacaccacttgaactggggcgatcccatcccatgggcgtcttaatgtg 421 | ||| | ||| |||||||||||||||| |||||||||||| || || || |||||| Sbjct: 1150 tttgcaacagtatataccacttgaactggggagatcccatcccaaggacgactcaatgtg 1091 Query: 422 cagagctcccacattatcacacc-aggctgaaa 453 || ||||||||||| |||||||| ||||||||| Sbjct: 1090 catagctcccacatgatcacaccaaggctgaaa 1058
>dbj|AK102209.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087I01, full insert sequence Length = 3442 Score = 180 bits (91), Expect = 3e-42 Identities = 184/213 (86%), Gaps = 4/213 (1%) Strand = Plus / Minus Query: 245 tcgcagtcgagcaagcgagtgaggaactcctggcagctcggccgatcttggggctctgcc 304 ||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||| Sbjct: 3082 tcgcagtcgagcaagcgggtaaggatctcctgacagctcggccgatcttggggctctgcc 3023 Query: 305 cagcaatctgcaattaacttgccaagaggcccttctggaatttcaagccccgacccttc- 363 || |||||||||||||||| ||||||||| ||||| ||||| || |||| || ||||| Sbjct: 3022 caacaatctgcaattaactcgccaagaggtccttcaggaatctcgagccgtgaaccttcg 2963 Query: 364 --agtaactgcatacaccacttgaactggggcgatcccatcccatgggcgtcttaatgtg 421 | ||| | ||| |||||||||||||||| |||||||||||| || || || |||||| Sbjct: 2962 tttgcaacagtatataccacttgaactggggagatcccatcccaaggacgactcaatgtg 2903 Query: 422 cagagctcccacattatcacacc-aggctgaaa 453 || ||||||||||| |||||||| ||||||||| Sbjct: 2902 catagctcccacatgatcacaccaaggctgaaa 2870
>gb|BT017362.1| Zea mays clone EL01N0324E06.c mRNA sequence Length = 1337 Score = 163 bits (82), Expect = 6e-37 Identities = 174/204 (85%), Gaps = 3/204 (1%) Strand = Plus / Plus Query: 245 tcgcagtcgagcaagcgagtgaggaactcctggcagctcggccgatcttggggctctgcc 304 |||||||| ||||| || || |||| |||||||||||||||||||| | ||||||||| Sbjct: 202 tcgcagtccagcaaacgggttaggatctcctggcagctcggccgattctcaggctctgcc 261 Query: 305 cagcaatctgcaattaacttgccaagaggcccttctggaatttcaagccccgacccttc- 363 |||||||||||||||||| |||| ||||| ||||| ||||| ||||||| || ||||| Sbjct: 262 cagcaatctgcaattaacctgccgagaggtccttcaggaatctcaagccgtgaaccttca 321 Query: 364 --agtaactgcatacaccacttgaactggggcgatcccatcccatgggcgtcttaatgtg 421 || |||||| ||||||||||||||||||| ||| || ||||||||||| || |||||| Sbjct: 322 ttagcaactgcgtacaccacttgaactggggagatgccttcccatgggcgactcaatgtg 381 Query: 422 cagagctcccacattatcacacca 445 || ||||||||||| || |||||| Sbjct: 382 cacagctcccacatgataacacca 405
>gb|BT024072.1| Zea mays clone EL01N0506A08 mRNA sequence Length = 2265 Score = 163 bits (82), Expect = 6e-37 Identities = 174/204 (85%), Gaps = 3/204 (1%) Strand = Plus / Minus Query: 245 tcgcagtcgagcaagcgagtgaggaactcctggcagctcggccgatcttggggctctgcc 304 |||||||| ||||| || || |||| |||||||||||||||||||| | ||||||||| Sbjct: 1980 tcgcagtccagcaaacgggttaggatctcctggcagctcggccgattctcaggctctgcc 1921 Query: 305 cagcaatctgcaattaacttgccaagaggcccttctggaatttcaagccccgacccttc- 363 |||||||||||||||||| |||| ||||| ||||| ||||| ||||||| || ||||| Sbjct: 1920 cagcaatctgcaattaacctgccgagaggtccttcaggaatctcaagccgtgaaccttca 1861 Query: 364 --agtaactgcatacaccacttgaactggggcgatcccatcccatgggcgtcttaatgtg 421 || |||||| ||||||||||||||||||| ||| || ||||||||||| || |||||| Sbjct: 1860 ttagcaactgcgtacaccacttgaactggggagatgccttcccatgggcgactcaatgtg 1801 Query: 422 cagagctcccacattatcacacca 445 || ||||||||||| || |||||| Sbjct: 1800 cacagctcccacatgataacacca 1777
>gb|AY106604.1| Zea mays PCO086088 mRNA sequence Length = 1648 Score = 163 bits (82), Expect = 6e-37 Identities = 174/204 (85%), Gaps = 3/204 (1%) Strand = Plus / Minus Query: 245 tcgcagtcgagcaagcgagtgaggaactcctggcagctcggccgatcttggggctctgcc 304 |||||||| ||||| || || |||| |||||||||||||||||||| | ||||||||| Sbjct: 1425 tcgcagtccagcaaacgggttaggatctcctggcagctcggccgattctcaggctctgcc 1366 Query: 305 cagcaatctgcaattaacttgccaagaggcccttctggaatttcaagccccgacccttc- 363 |||||||||||||| ||| |||| ||||| ||||| ||||| ||||||| ||| ||||| Sbjct: 1365 cagcaatctgcaatcaacctgccgagaggtccttcaggaatctcaagccgcgaaccttca 1306 Query: 364 --agtaactgcatacaccacttgaactggggcgatcccatcccatgggcgtcttaatgtg 421 || |||||| ||||||||||||||||||| ||| || ||||||||||| || |||||| Sbjct: 1305 ttagcaactgcgtacaccacttgaactggggagatgccttcccatgggcgactcaatgtg 1246 Query: 422 cagagctcccacattatcacacca 445 || ||||||||||| || |||||| Sbjct: 1245 cacagctcccacatgataacacca 1222
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 103 bits (52), Expect = 5e-19 Identities = 67/72 (93%) Strand = Plus / Plus Query: 245 tcgcagtcgagcaagcgagtgaggaactcctggcagctcggccgatcttggggctctgcc 304 ||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||| Sbjct: 27686541 tcgcagtcgagcaagcgggtaaggatctcctgacagctcggccgatcttggggctctgcc 27686600 Query: 305 cagcaatctgca 316 || ||||||||| Sbjct: 27686601 caacaatctgca 27686612 Score = 77.8 bits (39), Expect = 3e-11 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand = Plus / Plus Query: 380 acttgaactggggcgatcccatcccatgggcgtcttaatgtgcagagctcccacattatc 439 ||||||||||||| |||||||||||| || || || |||||||| ||||||||||| ||| Sbjct: 27687025 acttgaactggggagatcccatcccaaggacgactcaatgtgcatagctcccacatgatc 27687084 Query: 440 acacc-aggctgaaa 453 ||||| ||||||||| Sbjct: 27687085 acaccaaggctgaaa 27687099 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 312 ctgcaattaacttgccaagaggcccttctggaat 345 |||||||||||||||||||||| ||||| ||||| Sbjct: 27686731 ctgcaattaacttgccaagaggtccttcaggaat 27686764
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0485G01 Length = 167203 Score = 103 bits (52), Expect = 5e-19 Identities = 67/72 (93%) Strand = Plus / Plus Query: 245 tcgcagtcgagcaagcgagtgaggaactcctggcagctcggccgatcttggggctctgcc 304 ||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||| Sbjct: 95107 tcgcagtcgagcaagcgggtaaggatctcctgacagctcggccgatcttggggctctgcc 95166 Query: 305 cagcaatctgca 316 || ||||||||| Sbjct: 95167 caacaatctgca 95178 Score = 77.8 bits (39), Expect = 3e-11 Identities = 67/75 (89%), Gaps = 1/75 (1%) Strand = Plus / Plus Query: 380 acttgaactggggcgatcccatcccatgggcgtcttaatgtgcagagctcccacattatc 439 ||||||||||||| |||||||||||| || || || |||||||| ||||||||||| ||| Sbjct: 95591 acttgaactggggagatcccatcccaaggacgactcaatgtgcatagctcccacatgatc 95650 Query: 440 acacc-aggctgaaa 453 ||||| ||||||||| Sbjct: 95651 acaccaaggctgaaa 95665 Score = 52.0 bits (26), Expect = 0.002 Identities = 32/34 (94%) Strand = Plus / Plus Query: 312 ctgcaattaacttgccaagaggcccttctggaat 345 |||||||||||||||||||||| ||||| ||||| Sbjct: 95297 ctgcaattaacttgccaagaggtccttcaggaat 95330
>gb|BT016744.1| Zea mays clone Contig577 mRNA sequence Length = 1564 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Minus Query: 299 tctgcccagcaatctgcaattaacttgccaagaggcccttctggaatttc 348 ||||||||||||||||| || || | ||||||||||| ||||| ||||| Sbjct: 1310 tctgcccagcaatctgctatcaagcttccaagaggcccatctggtatttc 1261
>gb|AF361487.1| Campoletis sonorensis ichnovirus segment Q, complete sequence Length = 12098 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 133 gctagatttttacaagttttat 154 |||||||||||||||||||||| Sbjct: 6797 gctagatttttacaagttttat 6776
>gb|AY110292.1| Zea mays CL24928_1 mRNA sequence Length = 626 Score = 44.1 bits (22), Expect = 0.40 Identities = 43/50 (86%) Strand = Plus / Plus Query: 299 tctgcccagcaatctgcaattaacttgccaagaggcccttctggaatttc 348 ||||||||||||||||| || || | ||||||||||| ||||| ||||| Sbjct: 228 tctgcccagcaatctgctatcaagcttccaagaggcccatctggtatttc 277
>ref|NM_128655.3| Arabidopsis thaliana ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein-tyrosine kinase AT2G31010 mRNA, complete cds Length = 3023 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 296 ggctctgcccagcaatctgcaatta 320 ||||||||||| ||||||||||||| Sbjct: 2470 ggctctgcccaacaatctgcaatta 2446
>gb|AC102923.10| Mus musculus chromosome 1, clone RP24-262J2, complete sequence Length = 159541 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 87 aagagtttaatatatgtatat 107 ||||||||||||||||||||| Sbjct: 79596 aagagtttaatatatgtatat 79616
>gb|AY813802.1| Schistosoma japonicum SJCHGC03550 protein mRNA, complete cds Length = 454 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 87 aagagtttaatatatgtatatcctt 111 ||||||||||||||| ||||||||| Sbjct: 427 aagagtttaatatatatatatcctt 451
>emb|BX004784.9| Zebrafish DNA sequence from clone DKEY-82I7 in linkage group 25, complete sequence Length = 160429 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 135 tagatttttacaagttttata 155 ||||||||||||||||||||| Sbjct: 63509 tagatttttacaagttttata 63529
>emb|AL929172.6| Zebrafish DNA sequence from clone DKEYP-46C10 in linkage group 25, complete sequence Length = 182666 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 135 tagatttttacaagttttata 155 ||||||||||||||||||||| Sbjct: 25957 tagatttttacaagttttata 25937
>ref|NM_148600.1| Arabidopsis thaliana ATP binding AT1G58602 mRNA, complete cds Length = 4299 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 aagagtttaatatatgtata 106 |||||||||||||||||||| Sbjct: 4180 aagagtttaatatatgtata 4161
>ref|XM_632416.1| Dictyostelium discoideum hypothetical protein (DDB0187177), partial mRNA Length = 3546 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 135 tagatttttacaagttttat 154 |||||||||||||||||||| Sbjct: 1083 tagatttttacaagttttat 1102
>ref|XM_871103.1| PREDICTED: Bos taurus similar to cardiomyopathy associated 1 (LOC509670), mRNA Length = 5463 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 tcaggctctcagctctcagc 240 |||||||||||||||||||| Sbjct: 4223 tcaggctctcagctctcagc 4242
>ref|XM_876994.1| PREDICTED: Bos taurus similar to ubiquitin specific protease 52, transcript variant 9 (LOC538820), mRNA Length = 4508 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 gaaacggttccacctctgaa 179 |||||||||||||||||||| Sbjct: 1684 gaaacggttccacctctgaa 1665
>ref|XM_876943.1| PREDICTED: Bos taurus similar to ubiquitin specific protease 52, transcript variant 8 (LOC538820), mRNA Length = 4881 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 gaaacggttccacctctgaa 179 |||||||||||||||||||| Sbjct: 2063 gaaacggttccacctctgaa 2044
>ref|XM_582990.2| PREDICTED: Bos taurus similar to ubiquitin specific protease 52, transcript variant 1 (LOC538820), mRNA Length = 5012 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 gaaacggttccacctctgaa 179 |||||||||||||||||||| Sbjct: 2063 gaaacggttccacctctgaa 2044
>ref|XM_865640.1| PREDICTED: Bos taurus similar to ubiquitin specific protease 52, transcript variant 3 (LOC538820), mRNA Length = 4887 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 160 gaaacggttccacctctgaa 179 |||||||||||||||||||| Sbjct: 2063 gaaacggttccacctctgaa 2044
>ref|XM_862063.1| PREDICTED: Canis familiaris similar to SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin A5) (Sucrose nonfermenting protein 2 homolog) (hSNF2H)..., transcript variant 6 (LOC475451), mRNA Length = 3969 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 agagtttaatatatgtatatcctt 111 |||||||||||||| ||||||||| Sbjct: 1500 agagtttaatatatctatatcctt 1477
>ref|XM_862054.1| PREDICTED: Canis familiaris similar to SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin A5) (Sucrose nonfermenting protein 2 homolog) (hSNF2H)..., transcript variant 5 (LOC475451), mRNA Length = 3969 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 agagtttaatatatgtatatcctt 111 |||||||||||||| ||||||||| Sbjct: 1500 agagtttaatatatctatatcctt 1477
>ref|XM_862045.1| PREDICTED: Canis familiaris similar to SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin A5) (Sucrose nonfermenting protein 2 homolog) (hSNF2H)..., transcript variant 4 (LOC475451), mRNA Length = 3921 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 agagtttaatatatgtatatcctt 111 |||||||||||||| ||||||||| Sbjct: 1500 agagtttaatatatctatatcctt 1477
>ref|XM_862038.1| PREDICTED: Canis familiaris similar to SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin A5) (Sucrose nonfermenting protein 2 homolog) (hSNF2H)..., transcript variant 3 (LOC475451), mRNA Length = 3903 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 agagtttaatatatgtatatcctt 111 |||||||||||||| ||||||||| Sbjct: 1500 agagtttaatatatctatatcctt 1477
>ref|XM_862026.1| PREDICTED: Canis familiaris similar to SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin A5) (Sucrose nonfermenting protein 2 homolog) (hSNF2H)..., transcript variant 2 (LOC475451), mRNA Length = 3939 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 agagtttaatatatgtatatcctt 111 |||||||||||||| ||||||||| Sbjct: 1482 agagtttaatatatctatatcctt 1459
>ref|XM_532676.2| PREDICTED: Canis familiaris similar to SWI/SNF related matrix associated actin dependent regulator of chromatin subfamily A member 5 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin A5) (Sucrose nonfermenting protein 2 homolog) (hSNF2H)..., transcript variant 1 (LOC475451), mRNA Length = 4220 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 88 agagtttaatatatgtatatcctt 111 |||||||||||||| ||||||||| Sbjct: 1763 agagtttaatatatctatatcctt 1740
>gb|AC129213.4| Mus musculus BAC clone RP24-391M2 from chromosome 6, complete sequence Length = 154613 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 cttctggaatttcaagcccc 355 |||||||||||||||||||| Sbjct: 9701 cttctggaatttcaagcccc 9682
>gb|AC083946.5| Mus musculus strain C57BL6/J chromosome 6 clone RP23-132J21, complete sequence Length = 200910 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 cttctggaatttcaagcccc 355 |||||||||||||||||||| Sbjct: 99266 cttctggaatttcaagcccc 99247
>gb|AC004929.2| Homo sapiens PAC clone RP5-917G4 from 7, complete sequence Length = 106827 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 435 ttatcacaccaggctgaaat 454 |||||||||||||||||||| Sbjct: 71538 ttatcacaccaggctgaaat 71519
>gb|AC107761.9| Mus musculus chromosome 7, clone RP23-184M3, complete sequence Length = 216757 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 138 atttttacaagttttataca 157 |||||||||||||||||||| Sbjct: 144501 atttttacaagttttataca 144520
>emb|BX511036.18| Zebrafish DNA sequence from clone DKEY-279D7 in linkage group 6, complete sequence Length = 164653 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 cgtcttaatgtgcagagctc 429 |||||||||||||||||||| Sbjct: 126318 cgtcttaatgtgcagagctc 126299
>emb|AL358034.18| Human DNA sequence from clone RP11-51K14 on chromosome 10, complete sequence Length = 108373 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 184 ctgggaggttgggagtgaag 203 |||||||||||||||||||| Sbjct: 21022 ctgggaggttgggagtgaag 21003
>emb|AL158214.33| Human DNA sequence from clone RP11-543E8 on chromosome 1q42.2-43 Contains a novel gene, a ribosomal protein S24 (RPS24) pseudogene, the COG2 gene for component of oligomeric golgi complex 2, the 3' end of the AGT gene for angiotensinogen (serine (or cysteine) proteinase inhibitor,clade A (alpha-1 antiproteinase, antitrypsin), member 8) and a CpG island, complete sequence Length = 181175 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 agaatttttcctttacaaat 50 |||||||||||||||||||| Sbjct: 73771 agaatttttcctttacaaat 73752
>gb|CP000091.1| Ralstonia eutropha JMP134 chromosome 2, complete sequence Length = 2726152 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 tcctggcagctcggccgatc 291 |||||||||||||||||||| Sbjct: 2476477 tcctggcagctcggccgatc 2476496
>emb|CR318645.2| Zebrafish DNA sequence from clone CH211-161F7 in linkage group 11, complete sequence Length = 138050 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 308 caatctgcaattaacttgcc 327 |||||||||||||||||||| Sbjct: 111983 caatctgcaattaacttgcc 111964
>gb|AY091139.1| Arabidopsis thaliana Length = 4316 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 aagagtttaatatatgtata 106 |||||||||||||||||||| Sbjct: 4180 aagagtttaatatatgtata 4161
>gb|AC155716.7| Mus musculus 10 BAC RP24-177O15 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 154016 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 ttcctttacaaatttgaaagaaag 61 |||||||||||| ||||||||||| Sbjct: 83797 ttcctttacaaaattgaaagaaag 83774
>emb|BX322565.11| Zebrafish DNA sequence from clone CH211-262K18 in linkage group 24, complete sequence Length = 158981 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 ttctattaaaaggagagaattttt 39 |||||||||||||||||| ||||| Sbjct: 155386 ttctattaaaaggagagatttttt 155363
>emb|BX294098.11| Zebrafish DNA sequence from clone CH211-254P12 in linkage group 24, complete sequence Length = 152545 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 16 ttctattaaaaggagagaattttt 39 |||||||||||||||||| ||||| Sbjct: 36610 ttctattaaaaggagagatttttt 36633
>emb|BX510349.5| Zebrafish DNA sequence from clone CH211-69E13 in linkage group 7, complete sequence Length = 152064 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 166 gttccacctctgaaggcactggga 189 |||||||||||||| ||||||||| Sbjct: 50266 gttccacctctgaatgcactggga 50243
>gb|AC016153.21| Homo sapiens 12 BAC RP11-1022D13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 11001 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ttttcctttacaaatttgaa 55 |||||||||||||||||||| Sbjct: 1407 ttttcctttacaaatttgaa 1426
>gb|AC025263.22| Homo sapiens 12 BAC RP11-588G21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 182226 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 36 ttttcctttacaaatttgaa 55 |||||||||||||||||||| Sbjct: 181621 ttttcctttacaaatttgaa 181640
>gb|AC183495.1| Brassica oleracea Contig A, complete sequence Length = 356505 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 tcgagcaagcgagtgaggaa 270 |||||||||||||||||||| Sbjct: 149764 tcgagcaagcgagtgaggaa 149745
>dbj|AB078516.1| Arabidopsis thaliana genomic DNA, chromosome 1, P1 clone:R18I, complete sequence Length = 83408 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 aagagtttaatatatgtata 106 |||||||||||||||||||| Sbjct: 29378 aagagtttaatatatgtata 29359
>gb|AC005386.1|AC005386 citb_57_l_21, complete sequence Length = 196361 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 31 agaatttttcctttacaaat 50 |||||||||||||||||||| Sbjct: 166878 agaatttttcctttacaaat 166859
>emb|BX255913.8| Zebrafish DNA sequence from clone DKEY-85N7 in linkage group 20, complete sequence Length = 248581 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 32 gaatttttcctttacaaatt 51 |||||||||||||||||||| Sbjct: 75147 gaatttttcctttacaaatt 75166
>emb|BX294095.13| Zebrafish DNA sequence from clone CH211-248L17 in linkage group 24, complete sequence Length = 147604 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 ttctattaaaaggagagaattttt 39 |||||||||||||||||| ||||| Sbjct: 134174 ttctattaaaaggagagatttttt 134151
>emb|Z36028.1|SCYBR159W S.cerevisiae chromosome II reading frame ORF YBR159w Length = 1882 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ggcccttctggaatttcaag 351 |||||||||||||||||||| Sbjct: 184 ggcccttctggaatttcaag 165
>emb|Z36027.1|SCYBR158W S.cerevisiae chromosome II reading frame ORF YBR158w Length = 4374 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 332 ggcccttctggaatttcaag 351 |||||||||||||||||||| Sbjct: 4069 ggcccttctggaatttcaag 4050
>gb|DQ332743.1| Synthetic construct Saccharomyces cerevisiae clone FLH113412.01X YHL039W gene, complete sequence Length = 1758 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 ggagagaatttttcctttacaaat 50 |||||||||||||| ||||||||| Sbjct: 134 ggagagaatttttcgtttacaaat 111
>dbj|AP008242.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT22D23, TM0409, complete sequence Length = 93754 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 33 aatttttcctttacaaattt 52 |||||||||||||||||||| Sbjct: 85750 aatttttcctttacaaattt 85731
>gb|AC159462.6| Mus musculus BAC clone RP23-177D16 from chromosome 10, complete sequence Length = 200663 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 38 ttcctttacaaatttgaaagaaag 61 |||||||||||| ||||||||||| Sbjct: 110010 ttcctttacaaaattgaaagaaag 109987
>gb|AC161238.7| Mus musculus chromosome 19, clone RP24-288C19, complete sequence Length = 193445 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 226 ctctcagctctcagcgtact 245 |||||||||||||||||||| Sbjct: 126997 ctctcagctctcagcgtact 126978
>emb|AL808120.9| Mouse DNA sequence from clone RP23-418E2 on chromosome X, complete sequence Length = 148328 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 26 aggagagaatttttccttta 45 |||||||||||||||||||| Sbjct: 4302 aggagagaatttttccttta 4321
>gb|U11583.2|YSCH9196 Saccharomyces cerevisiae chromosome VIII cosmid 9196 Length = 55070 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 ggagagaatttttcctttacaaat 50 |||||||||||||| ||||||||| Sbjct: 21913 ggagagaatttttcgtttacaaat 21890
>gb|AY067301.1| Schmidtea mediterranea clone H.34.10f unknown mRNA sequence Length = 640 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 136 agatttttacaagttttata 155 |||||||||||||||||||| Sbjct: 199 agatttttacaagttttata 218
>gb|AC133964.2| Homo sapiens BAC clone RP11-288B20 from 4, complete sequence Length = 32393 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 ttttacaagttttatacaga 159 |||||||||||||||||||| Sbjct: 8405 ttttacaagttttatacaga 8386 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,871,687 Number of Sequences: 3902068 Number of extensions: 4871687 Number of successful extensions: 99404 Number of sequences better than 10.0: 60 Number of HSP's better than 10.0 without gapping: 60 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 99258 Number of HSP's gapped (non-prelim): 143 length of query: 459 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 437 effective length of database: 17,147,199,772 effective search space: 7493326300364 effective search space used: 7493326300364 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)