ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl30e04 |
|---|---|
| Clone Library Name | barley_pub |
>NALDL_HUMAN (Q9UQQ1) N-acetylated-alpha-linked acidic dipeptidase-like protein| (EC 3.4.17.21) (NAALADase L) (Ileal dipeptidylpeptidase) (100 kDa ileum brush border membrane protein) (I100) Length = 740 Score = 31.2 bits (69), Expect = 1.1 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Frame = +1 Query: 265 RPVQNSTIIPHPRPSWHLIW--HHQAGSHRPTIRPPCSVALRDHGGSQGWMETQ 420 R N P R H++W H SH P + CS A GS+ W E Q Sbjct: 664 RTFLNPRAFPEERYYSHVLWAPSHGLRSHIPGLSNACSRARDTASGSEAWAEVQ 717
>ULK2_HUMAN (Q8IYT8) Serine/threonine-protein kinase ULK2 (EC 2.7.11.1)| (Unc-51-like kinase 2) Length = 1036 Score = 30.8 bits (68), Expect = 1.4 Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 1/67 (1%) Frame = +3 Query: 204 PSDSFVRHCWNLEQMGTAGVSTGAKFHNNSTSAPFLASDLAPSGWLSPADDPPTMFGRS- 380 P + +R+ +EQ T+ S+G H + SA S+ +P G+L P P + Sbjct: 402 PVPTQIRNYQRIEQNLTSTASSGTNVHGSPRSAVVRRSNTSPMGFLRPGSCSPVPADTAQ 461 Query: 381 TRSRRIS 401 T RR+S Sbjct: 462 TVGRRLS 468
>UROL1_HUMAN (Q5DID0) Uromodulin-like 1 precursor (Olfactorin)| Length = 1318 Score = 30.0 bits (66), Expect = 2.4 Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 7/80 (8%) Frame = +3 Query: 177 FTRSPGPRFPSDS-FVRHCWNLEQMGTAGVSTGAKFHNNSTSAPFLA-----SDLAPSGW 338 FT SP P +P + W E G S + N+T S + P W Sbjct: 586 FTLSPSPGYPQGTPAAGQAWTPEPSPRRGGSNVVGYDRNNTGKGVEQELQGNSIMEPPSW 645 Query: 339 LSPADDPPTMF-GRSTRSRR 395 SP +DP F +TRS R Sbjct: 646 PSPTEDPTGHFLWHATRSTR 665
>GP156_HUMAN (Q8NFN8) Probable G-protein coupled receptor 156 (GABAB-related| G-protein coupled receptor) (G-protein coupled receptor PGR28) Length = 814 Score = 30.0 bits (66), Expect = 2.4 Identities = 19/63 (30%), Positives = 29/63 (46%) Frame = -1 Query: 424 KPGSPSTPEIRRDRVERPNMVGGSSAGESQPDGAKSDAKKGADVELLWNFAPVDTPAVPI 245 KP PS P+ +RP + GS +++P+GA+ K A + +PA P Sbjct: 661 KPSLPSDPQ------DRPGTLEGSKQSQTEPEGAR--GSKAAFLRQPSGSGRAPSPAAPC 712 Query: 244 CSK 236 SK Sbjct: 713 LSK 715
>RING1_RAT (Q6MGB6) Polycomb complex protein RING1 (RING finger protein 1)| Length = 406 Score = 29.6 bits (65), Expect = 3.1 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = -1 Query: 388 DRVERPNMVGGSSAGESQPDGAKSDAKKGADVELLWNFAPVDTPAVPICSKFQQCLTK 215 D +R +GG + G P GA S + G ++EL++ P+ + K + C T+ Sbjct: 231 DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPL------LVEKGEYCQTR 282
>RING1_MOUSE (O35730) Polycomb complex protein RING1 (RING finger protein 1)| (Transcription repressor Ring1A) Length = 406 Score = 29.6 bits (65), Expect = 3.1 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = -1 Query: 388 DRVERPNMVGGSSAGESQPDGAKSDAKKGADVELLWNFAPVDTPAVPICSKFQQCLTK 215 D +R +GG + G P GA S + G ++EL++ P+ + K + C T+ Sbjct: 231 DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPL------LVEKGEYCQTR 282
>RING1_HUMAN (Q06587) Polycomb complex protein RING1 (RING finger protein 1)| Length = 406 Score = 29.6 bits (65), Expect = 3.1 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = -1 Query: 388 DRVERPNMVGGSSAGESQPDGAKSDAKKGADVELLWNFAPVDTPAVPICSKFQQCLTK 215 D +R +GG + G P GA S + G ++EL++ P+ + K + C T+ Sbjct: 231 DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPL------LVEKGEYCQTR 282
>RING1_CANFA (Q5TJF3) Ubiquitin ligase protein RING1 (EC 6.3.2.-) (RING finger| protein 1) (RING1a) Length = 406 Score = 29.6 bits (65), Expect = 3.1 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = -1 Query: 388 DRVERPNMVGGSSAGESQPDGAKSDAKKGADVELLWNFAPVDTPAVPICSKFQQCLTK 215 D +R +GG + G P GA S + G ++EL++ P+ + K + C T+ Sbjct: 231 DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPL------LVEKGEYCQTR 282
>KDC1_DROME (P16911) Protein kinase DC1 (EC 2.7.11.1)| Length = 376 Score = 29.6 bits (65), Expect = 3.1 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +1 Query: 274 QNSTIIPHPRPSWHLIWHHQAGSHRP 351 + S+++P R L+WH Q GSHRP Sbjct: 294 EESSVVPGRR----LVWHSQPGSHRP 315
>RING1_MACMU (Q8WMN5) Polycomb complex protein RING1 (RING finger protein 1)| Length = 377 Score = 29.6 bits (65), Expect = 3.1 Identities = 16/58 (27%), Positives = 28/58 (48%) Frame = -1 Query: 388 DRVERPNMVGGSSAGESQPDGAKSDAKKGADVELLWNFAPVDTPAVPICSKFQQCLTK 215 D +R +GG + G P GA S + G ++EL++ P+ + K + C T+ Sbjct: 202 DSGDRGGTLGGGTLGPPSPPGAPSPPEPGGEIELVFRPHPL------LVEKGEYCQTR 253
>GUN4_THEFU (P26221) Endoglucanase E-4 precursor (EC 3.2.1.4)| (Endo-1,4-beta-glucanase E-4) (Cellulase E-4) (Cellulase E4) Length = 880 Score = 29.3 bits (64), Expect = 4.0 Identities = 17/57 (29%), Positives = 24/57 (42%) Frame = +3 Query: 201 FPSDSFVRHCWNLEQMGTAGVSTGAKFHNNSTSAPFLASDLAPSGWLSPADDPPTMF 371 FP+ V H WN T NS+ AP ++ +G S ++ PPT F Sbjct: 814 FPAGQQVTHGWNATWRQDGAAVTATPMSWNSSLAPGATVEVGFNGSWSGSNTPPTDF 870
>HPSE2_ARATH (Q8L608) Heparanase-like protein 2 precursor (EC 3.2.-.-)| Length = 539 Score = 25.8 bits (55), Expect(2) = 6.7 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 4/40 (10%) Frame = +3 Query: 144 QAHGQWKFAHIFTR----SPGPRFPSDSFVRHCWNLEQMG 251 Q HG W A + + G R S++F+ W L+Q+G Sbjct: 304 QEHGPWAAAWVGEAGGAFNSGGRQVSETFINSFWYLDQLG 343 Score = 21.2 bits (43), Expect(2) = 6.7 Identities = 10/38 (26%), Positives = 17/38 (44%) Frame = +1 Query: 271 VQNSTIIPHPRPSWHLIWHHQAGSHRPTIRPPCSVALR 384 ++ T +P+P L+WH G ++ S LR Sbjct: 366 LEKETFVPNPDYYSALLWHRLMGKGILGVQTTASEYLR 403
>CYB_PICCA (P48877) Cytochrome b| Length = 386 Score = 28.5 bits (62), Expect = 6.9 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = +3 Query: 213 SFVRHCWNLEQMGTAGVSTGAKFHNNSTSAPFLASDLAPSGWLSPADDPPTM 368 +F+ +CW QM G + N ++ PF+ DL P W S + PT+ Sbjct: 128 AFLGYCWVYGQMSHWGATV---ITNLFSAIPFIGKDLVPFIWGSFSVSNPTI 176
>FBX42_PONPY (Q5RDA9) F-box only protein 42| Length = 717 Score = 28.5 bits (62), Expect = 6.9 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 6/84 (7%) Frame = -3 Query: 371 EHGGRIVGR*EPA*WCQIRCQEGRGCGIIVEFCTGRHPCCPHLFQVP----AVPDKTI-- 210 EHG P WC C+ G+ + + +GR P P L P A P + Sbjct: 333 EHGA-------PELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPE 385 Query: 209 TRKARPWTPGEDVGEFPLSMGLAG 138 TR+ R +P + E P G G Sbjct: 386 TREYRSQSPVRSMDEAPCVNGRWG 409
>FBX42_HUMAN (Q6P3S6) F-box only protein 42| Length = 717 Score = 28.5 bits (62), Expect = 6.9 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 6/84 (7%) Frame = -3 Query: 371 EHGGRIVGR*EPA*WCQIRCQEGRGCGIIVEFCTGRHPCCPHLFQVP----AVPDKTI-- 210 EHG P WC C+ G+ + + +GR P P L P A P + Sbjct: 333 EHGA-------PELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPE 385 Query: 209 TRKARPWTPGEDVGEFPLSMGLAG 138 TR+ R +P + E P G G Sbjct: 386 TREYRSQSPVRSMDEAPCVNGRWG 409
>NK3R_CAVPO (P30098) Neuromedin K receptor (NKR) (Neurokinin B receptor) (NK-3| receptor) (NK-3R) (Tachykinin receptor 3) Length = 440 Score = 28.1 bits (61), Expect = 9.0 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Frame = +1 Query: 220 SGTAGTWNRWGQQGCRPVQN------STIIPHPRPSWHLIWHHQAGSHRPTIRPPCSVAL 381 +G W WG ++N T P P PSW + G P ++PP +VAL Sbjct: 5 AGNLSAWPGWGWPPPAALRNLTSSPAPTASPSPAPSW--TPSPRPGPAHPFLQPPWAVAL 62
>NHS_HUMAN (Q6T4R5) Nance-Horan syndrome protein (Congenital cataracts and| dental anomalies protein) Length = 1630 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/46 (32%), Positives = 17/46 (36%) Frame = +1 Query: 253 QQGCRPVQNSTIIPHPRPSWHLIWHHQAGSHRPTIRPPCSVALRDH 390 +Q PV N I + WH Q P RPPC L H Sbjct: 184 KQEAVPVSNLDIESKLSVYYRAPWHQQRNIFLPATRPPCVEELHRH 229
>POL_SIVMK (P05897) Pol polyprotein [Contains: Protease (Retropepsin) (EC| 3.4.23.-); Reverse transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1054 Score = 28.1 bits (61), Expect = 9.0 Identities = 11/34 (32%), Positives = 16/34 (47%) Frame = +3 Query: 132 FFSSQAHGQWKFAHIFTRSPGPRFPSDSFVRHCW 233 +F + G+W + HI+T S G F S W Sbjct: 859 YFLLKLAGRWPYLHIYTHSNGANFASQEVKMVTW 892
>FBX42_MOUSE (Q6PDJ6) F-box only protein 42| Length = 717 Score = 28.1 bits (61), Expect = 9.0 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 6/73 (8%) Frame = -3 Query: 338 PA*WCQIRCQEGRGCGIIVEFCTGRHPCCPHLFQVP----AVPDKTI--TRKARPWTPGE 177 P WC C+ G+ + + +GR P P L P A P + TR+ R +P Sbjct: 337 PELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQSPVR 396 Query: 176 DVGEFPLSMGLAG 138 + E P G G Sbjct: 397 SMDEAPCVNGRWG 409
>VG430_BPPF1 (P25130) 49.2 kDa protein (ORF 430)| Length = 430 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/26 (50%), Positives = 16/26 (61%) Frame = +3 Query: 333 GWLSPADDPPTMFGRSTRSRRISGVD 410 GW PAD M RS R R+ISG++ Sbjct: 168 GWTPPADLVDRMHCRSRRVRQISGIE 193 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,493,493 Number of Sequences: 219361 Number of extensions: 1705539 Number of successful extensions: 4962 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 4747 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4957 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
