ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30e03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 106 3e-23
2UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 106 3e-23
3UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3 95 7e-20
4UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment) 41 0.001
5UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1 32 1.0
6Y3064_ERWCT (Q6D2N1) UPF0209 protein ECA3064 30 2.3
7UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Exci... 29 5.0
8ING1_HUMAN (Q9UK53) Inhibitor of growth protein 1 28 8.6

>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2|
          Length = 1051

 Score =  106 bits (264), Expect = 3e-23
 Identities = 55/70 (78%), Positives = 56/70 (80%)
 Frame = -2

Query: 459  AYSISCGTSLLYNSMFPRHKDRLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXX 280
            AYSISCGTSLLYNSMFPRHK+RLDRKVVDVAREVAKMEVPSYRRHL              
Sbjct: 982  AYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDV 1041

Query: 279  DIPLVSVYFR 250
            DIPLVSVYFR
Sbjct: 1042 DIPLVSVYFR 1051



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>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1|
          Length = 1051

 Score =  106 bits (264), Expect = 3e-23
 Identities = 55/70 (78%), Positives = 56/70 (80%)
 Frame = -2

Query: 459  AYSISCGTSLLYNSMFPRHKDRLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXX 280
            AYSISCGTSLLYNSMFPRHK+RLDRKVVDVAREVAKMEVPSYRRHL              
Sbjct: 982  AYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDV 1041

Query: 279  DIPLVSVYFR 250
            DIPLVSVYFR
Sbjct: 1042 DIPLVSVYFR 1051



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>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3|
          Length = 1053

 Score = 95.1 bits (235), Expect = 7e-20
 Identities = 48/70 (68%), Positives = 53/70 (75%)
 Frame = -2

Query: 459  AYSISCGTSLLYNSMFPRHKDRLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXX 280
            AYSISCGTSLLYN+MF RHKDRL +KVVD+AREVAK++VP YRRHL              
Sbjct: 984  AYSISCGTSLLYNNMFARHKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDENDV 1043

Query: 279  DIPLVSVYFR 250
            DIPLVSVYFR
Sbjct: 1044 DIPLVSVYFR 1053



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>UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)|
          Length = 205

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 2/45 (4%)
 Frame = -2

Query: 450 ISCGTSLLYNSMFP--RHKDRLDRKVVDVAREVAKMEVPSYRRHL 322
           +S G SLLY S FP  + KDRL  K+  + +EV+K EVPS+ ++L
Sbjct: 138 LSYGVSLLYASFFPPKKVKDRLGLKLTSLIKEVSKKEVPSHVKNL 182



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>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1|
          Length = 1024

 Score = 31.6 bits (70), Expect = 1.0
 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = -2

Query: 450  ISCGTSLLYNSMFP--RHKDRLDRKVVDVAREVAKMEVPSY 334
            +S G SLLY S FP  + K+RL+  +  + + V K ++P++
Sbjct: 957  LSYGVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAH 997



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>Y3064_ERWCT (Q6D2N1) UPF0209 protein ECA3064|
          Length = 675

 Score = 30.4 bits (67), Expect = 2.3
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = +1

Query: 277 VNVIVIVILTGHHNIQMAPIRGHLHLGHLPGNIDHLPVQPILVPGEH 417
           VN  V+V+  GHH I   P   HL    + G + H+P  P+L   +H
Sbjct: 456 VNHAVVVLANGHH-ITDWPQTRHLPGYAVRGQVSHIPTNPVLGQLKH 501



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>UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 654

 Score = 29.3 bits (64), Expect = 5.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 214 TRDDVNSEGSLSTEVDRYEWDVNVIVIVILTGHHNIQMAPIRGHLHLG 357
           TR  V   G  S        D++++ + I  GH  + +A +RG  HLG
Sbjct: 256 TRQSVEEVGQAS--------DIDILAVAIKGGHACVNLAMVRGGRHLG 295



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>ING1_HUMAN (Q9UK53) Inhibitor of growth protein 1|
          Length = 422

 Score = 28.5 bits (62), Expect = 8.6
 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 13/57 (22%)
 Frame = -3

Query: 434 RCCTTPCSPGTRIGWTGRW-----SMLP--------GRWPRWRCPRIGAIWMLWWPV 303
           RC   PCS   R GW   W     S +P        GR  RW  P     W+  W V
Sbjct: 70  RCWGGPCSSALRCGWFSSWPPPSKSAIPIGGGSRGAGRVSRWPPPH----WLEAWRV 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,916,375
Number of Sequences: 219361
Number of extensions: 1072743
Number of successful extensions: 3441
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3439
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2909956200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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