Clone Name | rbastl30e03 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2 | 106 | 3e-23 | 2 | UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1 | 106 | 3e-23 | 3 | UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3 | 95 | 7e-20 | 4 | UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment) | 41 | 0.001 | 5 | UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1 | 32 | 1.0 | 6 | Y3064_ERWCT (Q6D2N1) UPF0209 protein ECA3064 | 30 | 2.3 | 7 | UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Exci... | 29 | 5.0 | 8 | ING1_HUMAN (Q9UK53) Inhibitor of growth protein 1 | 28 | 8.6 |
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>UBE12_WHEAT (P31251) Ubiquitin-activating enzyme E1 2| Length = 1051 Score = 106 bits (264), Expect = 3e-23 Identities = 55/70 (78%), Positives = 56/70 (80%) Frame = -2 Query: 459 AYSISCGTSLLYNSMFPRHKDRLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXX 280 AYSISCGTSLLYNSMFPRHK+RLDRKVVDVAREVAKMEVPSYRRHL Sbjct: 982 AYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDV 1041 Query: 279 DIPLVSVYFR 250 DIPLVSVYFR Sbjct: 1042 DIPLVSVYFR 1051
>UBE11_WHEAT (P20973) Ubiquitin-activating enzyme E1 1| Length = 1051 Score = 106 bits (264), Expect = 3e-23 Identities = 55/70 (78%), Positives = 56/70 (80%) Frame = -2 Query: 459 AYSISCGTSLLYNSMFPRHKDRLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXX 280 AYSISCGTSLLYNSMFPRHK+RLDRKVVDVAREVAKMEVPSYRRHL Sbjct: 982 AYSISCGTSLLYNSMFPRHKERLDRKVVDVAREVAKMEVPSYRRHLDVVVACEDDDDNDV 1041 Query: 279 DIPLVSVYFR 250 DIPLVSVYFR Sbjct: 1042 DIPLVSVYFR 1051
>UBE13_WHEAT (P31252) Ubiquitin-activating enzyme E1 3| Length = 1053 Score = 95.1 bits (235), Expect = 7e-20 Identities = 48/70 (68%), Positives = 53/70 (75%) Frame = -2 Query: 459 AYSISCGTSLLYNSMFPRHKDRLDRKVVDVAREVAKMEVPSYRRHLXXXXXXXXXXXXXX 280 AYSISCGTSLLYN+MF RHKDRL +KVVD+AREVAK++VP YRRHL Sbjct: 984 AYSISCGTSLLYNNMFARHKDRLTKKVVDIAREVAKVDVPEYRRHLDIGVACEDEDENDV 1043 Query: 279 DIPLVSVYFR 250 DIPLVSVYFR Sbjct: 1044 DIPLVSVYFR 1053
>UBA1_CANAL (P52495) Ubiquitin-activating enzyme E1 1 (Fragment)| Length = 205 Score = 41.2 bits (95), Expect = 0.001 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 2/45 (4%) Frame = -2 Query: 450 ISCGTSLLYNSMFP--RHKDRLDRKVVDVAREVAKMEVPSYRRHL 322 +S G SLLY S FP + KDRL K+ + +EV+K EVPS+ ++L Sbjct: 138 LSYGVSLLYASFFPPKKVKDRLGLKLTSLIKEVSKKEVPSHVKNL 182
>UBA1_YEAST (P22515) Ubiquitin-activating enzyme E1 1| Length = 1024 Score = 31.6 bits (70), Expect = 1.0 Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 2/41 (4%) Frame = -2 Query: 450 ISCGTSLLYNSMFP--RHKDRLDRKVVDVAREVAKMEVPSY 334 +S G SLLY S FP + K+RL+ + + + V K ++P++ Sbjct: 957 LSYGVSLLYASFFPPKKLKERLNLPITQLVKLVTKKDIPAH 997
>Y3064_ERWCT (Q6D2N1) UPF0209 protein ECA3064| Length = 675 Score = 30.4 bits (67), Expect = 2.3 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 277 VNVIVIVILTGHHNIQMAPIRGHLHLGHLPGNIDHLPVQPILVPGEH 417 VN V+V+ GHH I P HL + G + H+P P+L +H Sbjct: 456 VNHAVVVLANGHH-ITDWPQTRHLPGYAVRGQVSHIPTNPVLGQLKH 501
>UVRC_RALSO (Q8Y0H3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC| subunit C) Length = 654 Score = 29.3 bits (64), Expect = 5.0 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = +1 Query: 214 TRDDVNSEGSLSTEVDRYEWDVNVIVIVILTGHHNIQMAPIRGHLHLG 357 TR V G S D++++ + I GH + +A +RG HLG Sbjct: 256 TRQSVEEVGQAS--------DIDILAVAIKGGHACVNLAMVRGGRHLG 295
>ING1_HUMAN (Q9UK53) Inhibitor of growth protein 1| Length = 422 Score = 28.5 bits (62), Expect = 8.6 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 13/57 (22%) Frame = -3 Query: 434 RCCTTPCSPGTRIGWTGRW-----SMLP--------GRWPRWRCPRIGAIWMLWWPV 303 RC PCS R GW W S +P GR RW P W+ W V Sbjct: 70 RCWGGPCSSALRCGWFSSWPPPSKSAIPIGGGSRGAGRVSRWPPPH----WLEAWRV 122 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,916,375 Number of Sequences: 219361 Number of extensions: 1072743 Number of successful extensions: 3441 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 3321 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3439 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2909956200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)