>gb|AY028079.1| Homo sapiens putative protein and FSHD Region Gene 2 protein (HSA10-FRG2)
              genes, complete cds
          Length = 126625

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 128    aactgaattttaacaaataaag 149
              ||||||||||||||||||||||
Sbjct: 115204 aactgaattttaacaaataaag 115183

>emb|AL845259.22| Human DNA sequence from clone XX-2136C77 on chromosome 10 Contains a
             novel pseudogene, complete sequence
          Length = 39002

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 128   aactgaattttaacaaataaag 149
             ||||||||||||||||||||||
Sbjct: 11947 aactgaattttaacaaataaag 11926

>gb|AF117653.2| Homo sapiens double homeobox protein genes, complete cds
          Length = 13477

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 128  aactgaattttaacaaataaag 149
            ||||||||||||||||||||||
Sbjct: 3808 aactgaattttaacaaataaag 3787

>gb|U85056.1|HSU85056 Homo sapiens FSHD-associated repeat DNA, proximal region
          Length = 27574

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 128   aactgaattttaacaaataaag 149
             ||||||||||||||||||||||
Sbjct: 23194 aactgaattttaacaaataaag 23173

>dbj|D38025.1| Homo sapiens DNA for repeat sequence
          Length = 2534

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 128 aactgaattttaacaaataaag 149
           ||||||||||||||||||||||
Sbjct: 599 aactgaattttaacaaataaag 578

>gb|AC094784.13| Rattus norvegicus 11 BAC CH230-4O6 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 228501

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 269    cctgcaaagattgaacagttt 289
              |||||||||||||||||||||
Sbjct: 127181 cctgcaaagattgaacagttt 127201

>gb|AC069444.17| Homo sapiens 3 BAC RP11-169N13 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 165093

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 120   aaataaggaactgaattttaa 140
             |||||||||||||||||||||
Sbjct: 56503 aaataaggaactgaattttaa 56523

>ref|NM_001009084.1| Pan troglodytes protamine 2 (PRM2), mRNA
          Length = 596

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 408 gcgatgcttcctccggtgcct 428
           |||||||||||||||||||||
Sbjct: 325 gcgatgcttcctccggtgcct 305

>gb|AF215714.1|AF215714 Pongo pygmaeus protamine 2 (PRM2) gene, complete cds
          Length = 944

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 408 gcgatgcttcctccggtgcct 428
           |||||||||||||||||||||
Sbjct: 677 gcgatgcttcctccggtgcct 657

>emb|BX511269.12| Zebrafish DNA sequence from clone CH211-207N9 in linkage group 20,
              complete sequence
          Length = 161408

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 3      aaacagttatcgtgctatgct 23
              |||||||||||||||||||||
Sbjct: 118146 aaacagttatcgtgctatgct 118126

>emb|X72968.1|PTPROP2 P.troglodytes gene for pro-protamine P2
          Length = 758

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 408 gcgatgcttcctccggtgcct 428
           |||||||||||||||||||||
Sbjct: 325 gcgatgcttcctccggtgcct 305

>emb|X71337.1|PPYPROP2 P.pygmaeus gene for protamine P2
          Length = 696

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 408 gcgatgcttcctccggtgcct 428
           |||||||||||||||||||||
Sbjct: 267 gcgatgcttcctccggtgcct 247

>gb|AC118132.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone
            OSJNBa0003A09, complete sequence
          Length = 167222

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 54   ggcagaagctataaatgcaa 73
            ||||||||||||||||||||
Sbjct: 2460 ggcagaagctataaatgcaa 2441

>gb|BT018618.1| Zea mays clone EL01N0501G06.d mRNA sequence
          Length = 1573

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 267 tgcctgcaaagattgaacagtttc 290
           ||||||||||| ||||||||||||
Sbjct: 951 tgcctgcaaagcttgaacagtttc 928

>gb|AC084163.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-287D23, complete
              sequence
          Length = 214292

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 28     tgcttctgtgtgcgccagcacaag 51
              |||||||||||| |||||||||||
Sbjct: 106595 tgcttctgtgtgggccagcacaag 106618

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 54      ggcagaagctataaatgcaa 73
               ||||||||||||||||||||
Sbjct: 1963699 ggcagaagctataaatgcaa 1963680

>gb|U33057.1|SCD9717 Saccharomyces cerevisiae chromosome IV cosmids 8166, 9787, 9717, and
             lambda 3073
          Length = 72119

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 83    agacaatagatattttagca 102
             ||||||||||||||||||||
Sbjct: 40781 agacaatagatattttagca 40800

>emb|AL669948.8| Mouse DNA sequence from clone RP23-248K2 on chromosome 11, complete
              sequence
          Length = 223030

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 117    acaaaataaggaactgaattttaa 140
              ||||||||| ||||||||||||||
Sbjct: 153964 acaaaataatgaactgaattttaa 153941

>gb|AC124404.4| Mus musculus BAC clone RP24-371M10 from chromosome 12, complete
             sequence
          Length = 150375

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 133   aattttaacaaataaagcac 152
             ||||||||||||||||||||
Sbjct: 28344 aattttaacaaataaagcac 28325

>gb|AC112163.7| Mus Musculus chromosome 13 BAC, clone MGS1-437011 ES cell line, Complete
              Sequence, complete sequence
          Length = 159042

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 378    gtcatccttgtgtttccttt 397
              ||||||||||||||||||||
Sbjct: 144090 gtcatccttgtgtttccttt 144071

>gb|AC099399.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1006F06,
             complete sequence
          Length = 122218

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 54    ggcagaagctataaatgcaa 73
             ||||||||||||||||||||
Sbjct: 11712 ggcagaagctataaatgcaa 11731

>gb|AC007782.20| Homo sapiens 12 BAC RP11-515B12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 166083

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 87    aatagatattttagcaagacaaat 110
             ||||||||| ||||||||||||||
Sbjct: 89711 aatagatatattagcaagacaaat 89688

>gb|AC145456.1| Cicer arietinum strain FLIP84-92C clone gl1-15o9, complete sequence
          Length = 45868

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   actgaattttaacaaataaa 148
             ||||||||||||||||||||
Sbjct: 42657 actgaattttaacaaataaa 42638

>gb|AC090138.5| Homo sapiens, clone RP11-63C8, complete sequence
          Length = 189231

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    aataaggaactgaattttaa 140
              ||||||||||||||||||||
Sbjct: 134357 aataaggaactgaattttaa 134376

>dbj|AK145729.1| Mus musculus blastocyst blastocyst cDNA, RIKEN full-length enriched
            library, clone:I1C0034I12 product:hypothetical
            Immunoglobulin subtype/Ig-like domain
            profile/Immunoglobulin-like/Immunoglobulin/major
            histocompatibility complex containing protein, full
            insert sequence
          Length = 1421

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 117  acaaaataaggaactgaattttaa 140
            ||||||||| ||||||||||||||
Sbjct: 1041 acaaaataatgaactgaattttaa 1018

>gb|AC113815.6| Rattus norvegicus  BAC CH230-221C20 (Children's Hospital Oakland Research
              Institute Rat (BN/SsNHsd/MCW) BAC library) complete
              sequence
          Length = 229621

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    acaaaataaggaactgaatt 136
              ||||||||||||||||||||
Sbjct: 134170 acaaaataaggaactgaatt 134189

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 54      ggcagaagctataaatgcaa 73
               ||||||||||||||||||||
Sbjct: 1963697 ggcagaagctataaatgcaa 1963678

>gb|AC016845.14| Homo sapiens chromosome 11, clone RP11-5E23, complete sequence
          Length = 167727

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 121    aataaggaactgaattttaa 140
              ||||||||||||||||||||
Sbjct: 116350 aataaggaactgaattttaa 116331

>emb|AL135978.4|CNS01DVN Human chromosome 14 DNA sequence BAC R-125H8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 173043

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   aataaggaactgaattttaa 140
             ||||||||||||||||||||
Sbjct: 30884 aataaggaactgaattttaa 30903

>emb|AL160161.10| Human DNA sequence from clone RP1-188D3 on chromosome 6, complete
             sequence
          Length = 72159

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   caaaataaggaactgaattt 137
             ||||||||||||||||||||
Sbjct: 52561 caaaataaggaactgaattt 52542

>gb|AC153654.4| Mus musculus BAC clone RP23-457N11 from chromosome 12, complete sequence
          Length = 193547

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 133    aattttaacaaataaagcac 152
              ||||||||||||||||||||
Sbjct: 117582 aattttaacaaataaagcac 117563

>gb|M84796.1|YSCEUG1 Saccharomyces cerevisiae endoplasmic reticulum protein (EUG1) gene,
           complete cds
          Length = 1783

 Score = 40.1 bits (20), Expect = 5.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 83  agacaatagatattttagca 102
           ||||||||||||||||||||
Sbjct: 98  agacaatagatattttagca 117


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,984,710
Number of Sequences: 3902068
Number of extensions: 4984710
Number of successful extensions: 84847
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 84756
Number of HSP's gapped (non-prelim): 91
length of query: 429
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 407
effective length of database: 17,147,199,772
effective search space: 6978910307204
effective search space used: 6978910307204
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)