ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30d10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009052.1| Triticum aestivum clone wdr1.pk0002.e12:fis, full... 137 6e-30
2gb|AC026029.8| Homo sapiens BAC clone RP11-16G16 from 4, complet... 46 0.017
3emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 o... 44 0.066
4emb|AL022151.2|HS199L16 Human DNA sequence from clone RP1-199L16... 44 0.066
5emb|AL022154.2|HS249C1 Human DNA sequence from clone RP1-249C1 o... 44 0.066
6gb|AC128687.10| Homo sapiens 3 BAC RP11-255E6 (Roswell Park Canc... 44 0.066
7gb|AC092937.8| Homo sapiens 3q BAC RP11-114F20 (Roswell Park Can... 44 0.066
8gb|AC021151.8| Homo sapiens BAC clone RP11-483A20 from 4, comple... 44 0.066
9gb|AC110763.4| Homo sapiens BAC clone RP11-57E2 from 4, complete... 44 0.066
10gb|AC112197.3| Homo sapiens chromosome 5 clone RP11-442I12, comp... 44 0.066
11emb|AL121981.17|HS1061C18 Human DNA sequence from clone RP5-1061... 44 0.066
12emb|AL451105.13| Human DNA sequence from clone RP11-212D3 on chr... 42 0.26
13gb|AC100800.2| Homo sapiens chromosome 8, clone RP11-161I2, comp... 42 0.26
14gb|AC090420.6| Homo sapiens chromosome 8, clone RP11-346L6, comp... 42 0.26
15gb|AC108940.3| Homo sapiens BAC clone RP11-728F4 from 2, complet... 42 0.26
16emb|AL162580.20| Human DNA sequence from clone RP11-524A17 on ch... 40 1.0
17emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chr... 40 1.0
18gb|AC010629.8| Homo sapiens chromosome 5 clone CTD-2213L16, comp... 40 1.0
19gb|AC002479.1|AC002479 Human BAC clone GS1-9G13 from 5p15.2, com... 40 1.0
20gb|AC108442.6| Mus musculus chromosome 8, clone RP23-242M14, com... 38 4.1
21gb|AC170424.1| Rhesus Macaque BAC CH250-53N5 (Children's Hospit... 38 4.1
22gb|AC004513.1|HUAC004513 Homo sapiens Chromosome 16 BAC clone CI... 38 4.1
23gb|AC009902.13| Homo sapiens chromosome 8, clone RP11-363E6, com... 38 4.1
24gb|AC002451.1| Homo sapiens BAC clone GS1-306C12 from 7, complet... 38 4.1
25emb|Z82170.2|HS326L13 Human DNA sequence from clone RP3-326L13 o... 38 4.1
26emb|AL451075.15| Human DNA sequence from clone RP11-215I23 on ch... 38 4.1
27emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chr... 38 4.1
28emb|AL162493.21| Human DNA sequence from clone RP11-120L14 on ch... 38 4.1
29emb|AL928579.6| Mouse DNA sequence from clone RP23-302M15 on chr... 38 4.1
30gb|AC149472.23| Medicago truncatula clone mth2-77f21, complete s... 38 4.1
31gb|AC104457.2| Homo sapiens chromosome 1 clone RP5-837M10, compl... 38 4.1
32gb|AC091699.6| Homo sapiens chromosome 10 clone RP11-296D9, comp... 38 4.1
33gb|AC022026.7| Homo sapiens chromosome 10 clone RP11-506B4, comp... 38 4.1
34gb|AC080098.8| Homo sapiens 3q BAC RP11-284O3 (Roswell Park Canc... 38 4.1
35gb|AC063933.13| Homo sapiens 3 BAC RP11-566A3 (Roswell Park Canc... 38 4.1
36gb|AC068758.12| Homo sapiens 3 BAC RP11-285C9 (Roswell Park Canc... 38 4.1
37gb|DP000033.1| Carollia perspicillata target 116 genomic scaffold 38 4.1
38gb|AC175833.2| Pan troglodytes BAC clone CH251-679G1 from chromo... 38 4.1
39gb|AC020896.6| Homo sapiens chromosome 5 clone CTC-347C20, compl... 38 4.1
40gb|AC116482.11| Mus musculus chromosome 8, clone RP23-423D8, com... 38 4.1
41gb|AC064872.3| Homo sapiens BAC clone RP11-601H16 from 2, comple... 38 4.1
42gb|AC154656.2| Mus musculus BAC clone RP24-268M5 from chromosome... 38 4.1
43gb|AC026307.16|AC026307 Homo sapiens 12 BAC RP11-753N8 (Roswell ... 38 4.1
44gb|AC092134.4| Homo sapiens chromosome 16 clone RP11-264M12, com... 38 4.1
45gb|AC040174.5| Homo sapiens chromosome 16 clone RP11-96H17, comp... 38 4.1
46gb|AC008886.5|AC008886 Homo sapiens chromosome 5 clone CTD-2219D... 38 4.1
47gb|AC091962.2| Homo sapiens chromosome 5 clone RP11-461L18, comp... 38 4.1
48gb|AF127936.2|AF127936 Homo sapiens chromosome 21 clone PAC 153I... 38 4.1
49emb|AL163207.2|HS21C007 Homo sapiens chromosome 21 segment HS21C007 38 4.1 
>gb|BT009052.1| Triticum aestivum clone wdr1.pk0002.e12:fis, full insert mRNA
           sequence
          Length = 1421

 Score =  137 bits (69), Expect = 6e-30
 Identities = 85/89 (95%), Gaps = 1/89 (1%)
 Strand = Plus / Plus

                                                                       
Query: 3   gggattttatttcttaaggaatacacattctttttatcaggccaacaattggtct-cctt 61
           |||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 197 gggactttatttcttaaggaatacacattctttttatcaggccaacaatcggtctgcctt 256

                                        
Query: 62  gtataatgaactgggatagaattttgttg 90
           ||||||||||||||||||||| |||||||
Sbjct: 257 gtataatgaactgggatagaagtttgttg 285
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>gb|AC026029.8| Homo sapiens BAC clone RP11-16G16 from 4, complete sequence
          Length = 173067

 Score = 46.1 bits (23), Expect = 0.017
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 20    ggaatacacattctttttatcag 42
             |||||||||||||||||||||||
Sbjct: 90497 ggaatacacattctttttatcag 90475
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>emb|AL031734.9|HS652L8 Human DNA sequence from clone RP4-652L8 on chromosome 1q24.1-25.2
              Contains a novel gene, the 5' end of the PLAC3 gene for
              placenta-specific 3 (PLAC3) and a protein tyrosine
              phosphatase type IVA (member 1) (PTP4A1) pseudogene,
              complete sequence
          Length = 168835

 Score = 44.1 bits (22), Expect = 0.066
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 21     gaatacacattctttttatcag 42
              ||||||||||||||||||||||
Sbjct: 130455 gaatacacattctttttatcag 130434
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>emb|AL022151.2|HS199L16 Human DNA sequence from clone RP1-199L16 on chromosome Xq22.1-22.3
            Contains a ribosomal protein S29 (RPS29) pseudogene,
            complete sequence
          Length = 134963

 Score = 44.1 bits (22), Expect = 0.066
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 21   gaatacacattctttttatcag 42
            ||||||||||||||||||||||
Sbjct: 5143 gaatacacattctttttatcag 5164
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>emb|AL022154.2|HS249C1 Human DNA sequence from clone RP1-249C1 on chromosome Xq21.1-22.2,
             complete sequence
          Length = 118153

 Score = 44.1 bits (22), Expect = 0.066
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 21    gaatacacattctttttatcag 42
             ||||||||||||||||||||||
Sbjct: 77628 gaatacacattctttttatcag 77649
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>gb|AC128687.10| Homo sapiens 3 BAC RP11-255E6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 92345

 Score = 44.1 bits (22), Expect = 0.066
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 21    gaatacacattctttttatcag 42
             ||||||||||||||||||||||
Sbjct: 34018 gaatacacattctttttatcag 34039
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>gb|AC092937.8| Homo sapiens 3q BAC RP11-114F20 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 188709

 Score = 44.1 bits (22), Expect = 0.066
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 21     gaatacacattctttttatcag 42
              ||||||||||||||||||||||
Sbjct: 114298 gaatacacattctttttatcag 114319
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>gb|AC021151.8| Homo sapiens BAC clone RP11-483A20 from 4, complete sequence
          Length = 175081

 Score = 44.1 bits (22), Expect = 0.066
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 21   gaatacacattctttttatcag 42
            ||||||||||||||||||||||
Sbjct: 2864 gaatacacattctttttatcag 2885
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>gb|AC110763.4| Homo sapiens BAC clone RP11-57E2 from 4, complete sequence
          Length = 84182

 Score = 44.1 bits (22), Expect = 0.066
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 21    gaatacacattctttttatcag 42
             ||||||||||||||||||||||
Sbjct: 11489 gaatacacattctttttatcag 11510
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>gb|AC112197.3| Homo sapiens chromosome 5 clone RP11-442I12, complete sequence
          Length = 175775

 Score = 44.1 bits (22), Expect = 0.066
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 21    gaatacacattctttttatcag 42
             ||||||||||||||||||||||
Sbjct: 55249 gaatacacattctttttatcag 55228
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>emb|AL121981.17|HS1061C18 Human DNA sequence from clone RP5-1061C18 on chromosome 3p36.22-36.33
              Contains the 5' part of the DLG1 gene encoding the discs
              protein (large Drosophila homolog 1, presynaptic protein
              SAP97) and a CpG island, complete sequence
          Length = 148493

 Score = 44.1 bits (22), Expect = 0.066
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 21     gaatacacattctttttatcag 42
              ||||||||||||||||||||||
Sbjct: 135347 gaatacacattctttttatcag 135326
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>emb|AL451105.13| Human DNA sequence from clone RP11-212D3 on chromosome X Contains a
             SAR1a gene homolog 1 (S. cerevisiae) (SARA1) pseudogene,
             two novel genes and a chromosome 14 open reading frame 116
             (C14orf116) pseudogene, complete sequence
          Length = 125288

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 22    aatacacattctttttatcag 42
             |||||||||||||||||||||
Sbjct: 11702 aatacacattctttttatcag 11682
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>gb|AC100800.2| Homo sapiens chromosome 8, clone RP11-161I2, complete sequence
          Length = 196849

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 21     gaatacacattctttttatca 41
              |||||||||||||||||||||
Sbjct: 166076 gaatacacattctttttatca 166096
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>gb|AC090420.6| Homo sapiens chromosome 8, clone RP11-346L6, complete sequence
          Length = 216706

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 21     gaatacacattctttttatca 41
              |||||||||||||||||||||
Sbjct: 105204 gaatacacattctttttatca 105224
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>gb|AC108940.3| Homo sapiens BAC clone RP11-728F4 from 2, complete sequence
          Length = 126219

 Score = 42.1 bits (21), Expect = 0.26
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 21    gaatacacattctttttatca 41
             |||||||||||||||||||||
Sbjct: 44545 gaatacacattctttttatca 44565
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>emb|AL162580.20| Human DNA sequence from clone RP11-524A17 on chromosome 6 Contains a
             novel gene and a protein phosphatase 1 regulatory
             (inhibitor) subunit 14A (PPP1R14A) pseudogene, complete
             sequence
          Length = 171483

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 30    ttctttttatcaggccaacaattg 53
             |||||||||| |||||||||||||
Sbjct: 62357 ttctttttatgaggccaacaattg 62380
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>emb|AL157361.6| Human DNA sequence from clone RP11-132L12 on chromosome 13q21.33-22.3
             Contains a signal sequence receptor, alpha
             (translocon-associated protein alpha) (SSR1) pseudogene,
             complete sequence
          Length = 151603

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 19    aggaatacacattcttttta 38
             ||||||||||||||||||||
Sbjct: 15181 aggaatacacattcttttta 15200
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>gb|AC010629.8| Homo sapiens chromosome 5 clone CTD-2213L16, complete sequence
          Length = 82882

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 19    aggaatacacattctttttatcag 42
             ||||||||||||||||||| ||||
Sbjct: 45487 aggaatacacattctttttctcag 45510
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>gb|AC002479.1|AC002479 Human BAC clone GS1-9G13 from 5p15.2, complete sequence
          Length = 88682

 Score = 40.1 bits (20), Expect = 1.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 19   aggaatacacattctttttatcag 42
            ||||||||||||||||||| ||||
Sbjct: 9897 aggaatacacattctttttctcag 9920
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>gb|AC108442.6| Mus musculus chromosome 8, clone RP23-242M14, complete sequence
          Length = 209618

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    gaatacacattctttttat 39
             |||||||||||||||||||
Sbjct: 51827 gaatacacattctttttat 51809
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>gb|AC170424.1| Rhesus Macaque  BAC CH250-53N5 (Children's Hospital Oakland Research
             Institute Rhesus macaque Adult Male BAC Library) complete
             sequence
          Length = 175619

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 11    atttcttaaggaatacaca 29
             |||||||||||||||||||
Sbjct: 89449 atttcttaaggaatacaca 89467
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>gb|AC004513.1|HUAC004513 Homo sapiens Chromosome 16 BAC clone CIT987SK-A-926E7, complete
            sequence
          Length = 101311

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 24   tacacattctttttatcag 42
            |||||||||||||||||||
Sbjct: 9438 tacacattctttttatcag 9420
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>gb|AC009902.13| Homo sapiens chromosome 8, clone RP11-363E6, complete sequence
          Length = 217249

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 11     atttcttaaggaatacaca 29
              |||||||||||||||||||
Sbjct: 124794 atttcttaaggaatacaca 124812
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>gb|AC002451.1| Homo sapiens BAC clone GS1-306C12 from 7, complete sequence
          Length = 157099

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 16     ttaaggaatacacattcttttta 38
              |||| ||||||||||||||||||
Sbjct: 134873 ttaaagaatacacattcttttta 134895
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>emb|Z82170.2|HS326L13 Human DNA sequence from clone RP3-326L13 on chromosome Xq21.1 Contains
             the POU3F4 gene for POU domain, class 3, transcription
             factor 4 and two CpG islands, complete sequence
          Length = 127247

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 20    ggaatacacattctttttatcag 42
             ||||||||||||||||| |||||
Sbjct: 64288 ggaatacacattcttttcatcag 64310
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>emb|AL451075.15| Human DNA sequence from clone RP11-215I23 on chromosome 1 Contains the 3'
              end of the SOAT1 gene for sterol O-acyltransferase
              (acyl-Coenzyme A: cholesterol acyltransferase) 1, the 5'
              end of a novel gene, a MADS box transcription enhancer
              factor 2 polypeptide A (myocyte enhancer factor 2A) (MEF2A)
              pseudogene and a heterogeneous nuclear ribonucleoprotein A1
              (HNRPA1) pseudogene, complete sequence
          Length = 153937

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 16     ttaaggaatacacattctttttatcag 42
              ||||||||||||||||| |||| ||||
Sbjct: 105894 ttaaggaatacacattcattttgtcag 105868
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>emb|AL445928.8| Human DNA sequence from clone RP11-305E17 on chromosome 1, complete
             sequence
          Length = 173580

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 6     attttatttcttaaggaat 24
             |||||||||||||||||||
Sbjct: 29303 attttatttcttaaggaat 29321
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>emb|AL162493.21| Human DNA sequence from clone RP11-120L14 on chromosome 13, complete
             sequence
          Length = 158083

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 69    gaactgggatagaattttg 87
             |||||||||||||||||||
Sbjct: 87117 gaactgggatagaattttg 87135
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>emb|AL928579.6| Mouse DNA sequence from clone RP23-302M15 on chromosome 4, complete
              sequence
          Length = 184057

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 34     ttttatcaggccaacaatt 52
              |||||||||||||||||||
Sbjct: 127345 ttttatcaggccaacaatt 127363
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>gb|AC149472.23| Medicago truncatula clone mth2-77f21, complete sequence
          Length = 120151

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 5     gattttatttcttaaggaa 23
             |||||||||||||||||||
Sbjct: 93475 gattttatttcttaaggaa 93457
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>gb|AC104457.2| Homo sapiens chromosome 1 clone RP5-837M10, complete sequence
          Length = 168505

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 20     ggaatacacattcttttta 38
              |||||||||||||||||||
Sbjct: 154303 ggaatacacattcttttta 154285
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>gb|AC091699.6| Homo sapiens chromosome 10 clone RP11-296D9, complete sequence
          Length = 196856

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 21     gaatacacattctttttatcagg 43
              |||||||||||||||| ||||||
Sbjct: 180498 gaatacacattcttttcatcagg 180476
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>gb|AC022026.7| Homo sapiens chromosome 10 clone RP11-506B4, complete sequence
          Length = 170834

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 21    gaatacacattctttttatcagg 43
             |||||||||||||||| ||||||
Sbjct: 64659 gaatacacattcttttcatcagg 64637
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>gb|AC080098.8| Homo sapiens 3q BAC RP11-284O3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 77850

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 5     gattttatttcttaaggaa 23
             |||||||||||||||||||
Sbjct: 64306 gattttatttcttaaggaa 64324
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>gb|AC063933.13| Homo sapiens 3 BAC RP11-566A3 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 168380

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 20     ggaatacacattctttttatcag 42
              |||||||||||||||||| ||||
Sbjct: 167495 ggaatacacattctttttgtcag 167517
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>gb|AC068758.12| Homo sapiens 3 BAC RP11-285C9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 125311

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 20    ggaatacacattctttttatcag 42
             |||||||||||||||||| ||||
Sbjct: 83024 ggaatacacattctttttgtcag 83046
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>gb|DP000033.1| Carollia perspicillata target 116 genomic scaffold
          Length = 347743

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 21    gaatacacattctttttat 39
             |||||||||||||||||||
Sbjct: 12599 gaatacacattctttttat 12581
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>gb|AC175833.2| Pan troglodytes BAC clone CH251-679G1 from chromosome 7, complete
              sequence
          Length = 191935

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 16     ttaaggaatacacattcttttta 38
              |||| ||||||||||||||||||
Sbjct: 148490 ttaaagaatacacattcttttta 148468
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>gb|AC020896.6| Homo sapiens chromosome 5 clone CTC-347C20, complete sequence
          Length = 169835

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 20    ggaatacacattctttttatcag 42
             ||||||||||||||||| |||||
Sbjct: 22636 ggaatacacattcttttcatcag 22614
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>gb|AC116482.11| Mus musculus chromosome 8, clone RP23-423D8, complete sequence
          Length = 202027

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 21     gaatacacattctttttat 39
              |||||||||||||||||||
Sbjct: 121269 gaatacacattctttttat 121287
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>gb|AC064872.3| Homo sapiens BAC clone RP11-601H16 from 2, complete sequence
          Length = 120101

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                               
Query: 21   gaatacacattctttttat 39
            |||||||||||||||||||
Sbjct: 3566 gaatacacattctttttat 3548
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>gb|AC154656.2| Mus musculus BAC clone RP24-268M5 from chromosome 16, complete sequence
          Length = 166376

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 6     attttatttcttaaggaat 24
             |||||||||||||||||||
Sbjct: 32328 attttatttcttaaggaat 32310
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>gb|AC026307.16|AC026307 Homo sapiens 12 BAC RP11-753N8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166357

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 20    ggaatacacattctttttatcag 42
             ||||||||||||||||| |||||
Sbjct: 89784 ggaatacacattcttttcatcag 89806
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>gb|AC092134.4| Homo sapiens chromosome 16 clone RP11-264M12, complete sequence
          Length = 159925

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 24    tacacattctttttatcag 42
             |||||||||||||||||||
Sbjct: 52807 tacacattctttttatcag 52789
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>gb|AC040174.5| Homo sapiens chromosome 16 clone RP11-96H17, complete sequence
          Length = 175802

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 24    tacacattctttttatcag 42
             |||||||||||||||||||
Sbjct: 87960 tacacattctttttatcag 87978
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>gb|AC008886.5|AC008886 Homo sapiens chromosome 5 clone CTD-2219D10, complete sequence
          Length = 98955

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 20    ggaatacacattctttttatcag 42
             ||||||||||||||||| |||||
Sbjct: 38506 ggaatacacattcttttcatcag 38484
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>gb|AC091962.2| Homo sapiens chromosome 5 clone RP11-461L18, complete sequence
          Length = 152403

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 21    gaatacacattctttttat 39
             |||||||||||||||||||
Sbjct: 59257 gaatacacattctttttat 59275
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>gb|AF127936.2|AF127936 Homo sapiens chromosome 21 clone PAC 153I22 map21q11.2, complete
             sequence
          Length = 149684

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                        
Query: 67    atgaactgggatagaattttgttgaag 93
             ||||||||  |||||||||||||||||
Sbjct: 88289 atgaactgccatagaattttgttgaag 88263
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>emb|AL163207.2|HS21C007 Homo sapiens chromosome 21 segment HS21C007
          Length = 340000

 Score = 38.2 bits (19), Expect = 4.1
 Identities = 25/27 (92%)
 Strand = Plus / Minus

                                         
Query: 67     atgaactgggatagaattttgttgaag 93
              ||||||||  |||||||||||||||||
Sbjct: 124454 atgaactgccatagaattttgttgaag 124428


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,453,357
Number of Sequences: 3902068
Number of extensions: 1453357
Number of successful extensions: 132615
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 132455
Number of HSP's gapped (non-prelim): 159
length of query: 94
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 73
effective length of database: 17,151,101,840
effective search space: 1252030434320
effective search space used: 1252030434320
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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