ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30d09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MEF2C_MOUSE (Q8CFN5) Myocyte-specific enhancer factor 2C 30 2.0
2MEF2C_HUMAN (Q06413) Myocyte-specific enhancer factor 2C 30 2.0
3ALA6_ARATH (Q9SLK6) Putative phospholipid-transporting ATPase 6 ... 30 2.0
4FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related ... 29 3.3
5QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin) 29 3.3
6YCF2_PSINU (Q8WHW9) Protein ycf2 28 7.4
7METK_METKA (Q8TV85) S-adenosylmethionine synthetase (EC 2.5.1.6)... 28 7.4
8WRK18_ARATH (Q9C5T4) WRKY transcription factor 18 (WRKY DNA-bind... 27 9.7
9TF2AA_MOUSE (Q99PM3) Transcription initiation factor IIA subunit... 27 9.7

>MEF2C_MOUSE (Q8CFN5) Myocyte-specific enhancer factor 2C|
          Length = 474

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 233 GHHHQHFQKNPPLL*PQIGACPSLHLIKLNN 325
           G   QH    PP    Q+GAC S HL + +N
Sbjct: 349 GWQQQHLHNMPPSALSQLGACTSTHLSQSSN 379



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>MEF2C_HUMAN (Q06413) Myocyte-specific enhancer factor 2C|
          Length = 473

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 233 GHHHQHFQKNPPLL*PQIGACPSLHLIKLNN 325
           G   QH    PP    Q+GAC S HL + +N
Sbjct: 349 GWQQQHLHNMPPSALSQLGACTSTHLSQSSN 379



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>ALA6_ARATH (Q9SLK6) Putative phospholipid-transporting ATPase 6 (EC 3.6.3.1)|
           (Aminophospholipid flippase 6)
          Length = 1244

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
 Frame = -1

Query: 192 KSGKNYLGSHSSMSNVFAH-GISELVMRYTDAVSTVITLITSLFHPCK 52
           KSGK YLG+ S   NV+   G+  L + Y     T      S FH  K
Sbjct: 661 KSGKEYLGATSKHLNVYGEAGLRTLALGYRKLDETEYAAWNSEFHKAK 708



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>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
           (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1)
          Length = 451

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 218 NQKHPGHHHQHFQKNPP 268
           N  HP HHH H   +PP
Sbjct: 40  NSHHPHHHHHHHHHHPP 56



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>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)|
          Length = 387

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 218 NQKHPGHHHQHFQKNPP 268
           N  HP HHH H   +PP
Sbjct: 40  NSHHPHHHHHHHHHHPP 56



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>YCF2_PSINU (Q8WHW9) Protein ycf2|
          Length = 2313

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 201  PH*KSGKNYLGSHSSMSNVFAHGISELVMRYTDAVSTVITLI 76
            PH K  KN+L +HSS+   F H  S++       VS  + L+
Sbjct: 912  PHLKYIKNFLFNHSSILEQFWHNRSDISRDLGSQVSNKLVLL 953



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>METK_METKA (Q8TV85) S-adenosylmethionine synthetase (EC 2.5.1.6) (Methionine|
           adenosyltransferase) (AdoMet synthetase)
          Length = 397

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 189 SGKNYLGSHSSMSNVFAHGISELVMRYTDAVSTVITLITSLFHPCKLP 46
           +GKN +     + NV AH ++  +   T A    + L++ + HP   P
Sbjct: 305 AGKNPVNHVGKLYNVLAHQMAREIYEETSADEVYVRLLSQIGHPIDDP 352



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>WRK18_ARATH (Q9C5T4) WRKY transcription factor 18 (WRKY DNA-binding protein 18)|
           (AtWRKY18)
          Length = 310

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 209 ASTNQKHPGHHHQHFQKN 262
           +S+N+ H  HH QH QKN
Sbjct: 124 SSSNEDHHHHHQQHEQKN 141



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>TF2AA_MOUSE (Q99PM3) Transcription initiation factor IIA subunit 1 (General|
           transcription factor IIA1) [Contains: Transcription
           initiation factor IIA alpha chain (TFIIA p35 subunit);
           Transcription initiation factor IIA beta chain (TFIIA
           p19 subunit)]
          Length = 378

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 221 QKHPGHHHQHFQKNPPLL*PQ 283
           Q+H  HHHQH Q  P    PQ
Sbjct: 79  QQHHHHHHQHQQAQPQQTVPQ 99


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,871,008
Number of Sequences: 219361
Number of extensions: 602474
Number of successful extensions: 1468
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1431
length of database: 80,573,946
effective HSP length: 87
effective length of database: 61,489,539
effective search space used: 1475748936
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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