>emb|AL136380.22| Human DNA sequence from clone RP5-882O7 on chromosome 1p33-34.2
             Contains the 5' end of the PTCH2 gene for patched homolog
             2 (Drosophila), a ribosomal protein S2 (RPS2) pseudogene,
             the EIF2B3 gene for eukaryotic translation initiation
             factor 2B subunit 3 gamma 58kDa, a chromosome 14 open
             reading frame 18 (C14orf18) pseudogene, a peptidylprolyl
             isomerase A (cyclophilin A) (PPIA) pseudogene, a
             mitochondrial ribosomal protein S17 (MRPS17) pseudogene
             and four CpG islands, complete sequence
          Length = 171656

 Score = 46.1 bits (23), Expect = 0.072
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 10    ataacatagaaaaaacaacacta 32
             |||||||||||||||||||||||
Sbjct: 49699 ataacatagaaaaaacaacacta 49677

>gb|CP000040.1| Bacillus cereus E33L plasmid pE33L466, complete sequence
          Length = 466370

 Score = 44.1 bits (22), Expect = 0.28
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 208    tgctagtaccaatcaaaaacat 229
              ||||||||||||||||||||||
Sbjct: 442173 tgctagtaccaatcaaaaacat 442194

>ref|NM_186038.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 998

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 221 caaaaacatccaggtcatcatcatc 245
           |||||| ||||||||||||||||||
Sbjct: 415 caaaaagatccaggtcatcatcatc 391

>ref|XM_506540.1| PREDICTED Oryza sativa (japonica cultivar-group), P0453E03.111 mRNA
          Length = 1000

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 221 caaaaacatccaggtcatcatcatc 245
           |||||| ||||||||||||||||||
Sbjct: 417 caaaaagatccaggtcatcatcatc 393

>emb|AL590617.10| Human DNA sequence from clone RP11-390P2 on chromosome 6, complete
             sequence
          Length = 124699

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 214   taccaatcaaaaacatccagg 234
             |||||||||||||||||||||
Sbjct: 59121 taccaatcaaaaacatccagg 59101

>emb|AL132976.2|ATF11C1 Arabidopsis thaliana DNA chromosome 3, BAC clone F11C1
          Length = 111122

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/32 (93%), Gaps = 2/32 (6%)
 Strand = Plus / Plus

                                             
Query: 215   accaatcaaaaaca--tccaggtcatcatcat 244
             ||||||||||||||  ||||||||||||||||
Sbjct: 73290 accaatcaaaaacaaatccaggtcatcatcat 73321

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 221      caaaaacatccaggtcatcatcatc 245
                |||||| ||||||||||||||||||
Sbjct: 27889746 caaaaagatccaggtcatcatcatc 27889722

>gb|AF400225.1| Spodoptera frugiperda ribosomal protein S30 mRNA, complete cds
          Length = 513

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 238 tcatcatcagcatttccagaa 258
           |||||||||||||||||||||
Sbjct: 164 tcatcatcagcatttccagaa 144

>dbj|AP005452.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0453E03
          Length = 159980

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 221   caaaaacatccaggtcatcatcatc 245
             |||||| ||||||||||||||||||
Sbjct: 53104 caaaaagatccaggtcatcatcatc 53080

>dbj|AK121942.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107E20, full
           insert sequence
          Length = 1028

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 221 caaaaacatccaggtcatcatcatc 245
           |||||| ||||||||||||||||||
Sbjct: 418 caaaaagatccaggtcatcatcatc 394

>dbj|AK098892.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001M09, full
           insert sequence
          Length = 998

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 221 caaaaacatccaggtcatcatcatc 245
           |||||| ||||||||||||||||||
Sbjct: 415 caaaaagatccaggtcatcatcatc 391

>dbj|AK061761.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B01, full
           insert sequence
          Length = 1000

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 221 caaaaacatccaggtcatcatcatc 245
           |||||| ||||||||||||||||||
Sbjct: 417 caaaaagatccaggtcatcatcatc 393

>dbj|D12821.1|RICEF1B Oryza sativa (japonica cultivar-group) mRNA for elongation factor 1
           beta', complete cds
          Length = 956

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 221 caaaaacatccaggtcatcatcatc 245
           |||||| ||||||||||||||||||
Sbjct: 376 caaaaagatccaggtcatcatcatc 352

>gb|AC096856.7| Oryza sativa chromosome 3 BAC OSJNBa0075M12 genomic sequence, complete
             sequence
          Length = 130272

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   tagtaccaatcaaaaacatc 230
             ||||||||||||||||||||
Sbjct: 32585 tagtaccaatcaaaaacatc 32604

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 211      tagtaccaatcaaaaacatc 230
                ||||||||||||||||||||
Sbjct: 35031684 tagtaccaatcaaaaacatc 35031703

>emb|Z82200.1|HS333E23 Human DNA sequence from clone RP3-333E23 on chromosome Xq21.1 Contains
             the P2RY10 gene for purinergic receptor P2Y G-protein
             coupled 10, complete sequence
          Length = 128011

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 164   tgagatcctaaataattttt 183
             ||||||||||||||||||||
Sbjct: 36486 tgagatcctaaataattttt 36467

>emb|AL590239.7| Human DNA sequence from clone RP11-466D24 on chromosome 6, complete
             sequence
          Length = 127316

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 246   agcatttccagaaaaatcct 265
             ||||||||||||||||||||
Sbjct: 21324 agcatttccagaaaaatcct 21305

>emb|AL583825.8| Human DNA sequence from clone RP11-362H12 on chromosome 1 Contains a
             mitochondrial intermediate peptidase (MIPEP) pseudogene
             and a CpG island, complete sequence
          Length = 198794

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 5     tttgaataacatagaaaaaa 24
             ||||||||||||||||||||
Sbjct: 65560 tttgaataacatagaaaaaa 65579

>emb|AL627070.16| Mouse DNA sequence from clone RP23-353E13 on chromosome 11 Contains a
              glyceraldehyde-3-phosphate dehydrogenase (Gapd) pseudogene,
              wo novel genes and a CpG island, complete sequence
          Length = 210813

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    ttttgcctgattttcagtgt 199
              ||||||||||||||||||||
Sbjct: 185518 ttttgcctgattttcagtgt 185537

>gb|AC113356.2| Homo sapiens chromosome 5 clone CTD-3035P15, complete sequence
          Length = 30365

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     gaataacatagaaaaaacaa 27
             ||||||||||||||||||||
Sbjct: 22410 gaataacatagaaaaaacaa 22429

>gb|AC103706.2| Homo sapiens chromosome 8, clone RP11-629O1, complete sequence
          Length = 189207

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 236   catcatcatcagcatttcca 255
             ||||||||||||||||||||
Sbjct: 90292 catcatcatcagcatttcca 90311

>gb|AC107983.3| Homo sapiens chromosome 17, clone CTD-2303H24, complete sequence
          Length = 130561

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 172   taaataatttttgcctgatt 191
             ||||||||||||||||||||
Sbjct: 35963 taaataatttttgcctgatt 35982

>gb|AC163759.4| Pan troglodytes BAC clone CH251-258I24 from chromosome unknown,
             complete sequence
          Length = 180158

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   ccaggtcatcatcatcagca 249
             ||||||||||||||||||||
Sbjct: 40696 ccaggtcatcatcatcagca 40715

>ref|NG_002717.1| Homo sapiens nitric oxide synthase 2A pseudogene (LOC339256) on
            chromosome 17
          Length = 4614

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  taaataatttttgcctgatt 191
            ||||||||||||||||||||
Sbjct: 3168 taaataatttttgcctgatt 3149

>ref|NG_001568.1| Homo sapiens nitric oxide synthase 2A (inducible, hepatocytes)
            pseudogene (LOC201288) on chromosome 17
          Length = 6396

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 172  taaataatttttgcctgatt 191
            ||||||||||||||||||||
Sbjct: 4945 taaataatttttgcctgatt 4926

>tpg|BK001591.1| TPA: TPA_exp: Homo sapiens chromosome 17 proximal SMS-REP low-copy
              repeat, genomic sequence
          Length = 255901

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 172    taaataatttttgcctgatt 191
              ||||||||||||||||||||
Sbjct: 127061 taaataatttttgcctgatt 127042

>tpg|BK001590.1| TPA: TPA_exp: Homo sapiens chromosome 17 middle SMS-REP low-copy repeat,
              genomic sequence
          Length = 240806

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    taaataatttttgcctgatt 191
              ||||||||||||||||||||
Sbjct: 113359 taaataatttttgcctgatt 113378

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 211      tagtaccaatcaaaaacatc 230
                ||||||||||||||||||||
Sbjct: 35121756 tagtaccaatcaaaaacatc 35121775

>gb|AC026384.19|AC026384 Mus musculus 11 BAC RP23-390D17 (Roswell Park Cancer Institute Mouse BAC
              Library) complete sequence
          Length = 177428

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 180    ttttgcctgattttcagtgt 199
              ||||||||||||||||||||
Sbjct: 103161 ttttgcctgattttcagtgt 103180

>gb|AC015818.32| Homo sapiens chromosome 17, clone RP11-434D2, complete sequence
          Length = 194767

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 172   taaataatttttgcctgatt 191
             ||||||||||||||||||||
Sbjct: 61917 taaataatttttgcctgatt 61898

>gb|AC137549.1| Homo sapiens chromosome 5 clone RP11-159K7, complete sequence
          Length = 138494

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 8     gaataacatagaaaaaacaa 27
             ||||||||||||||||||||
Sbjct: 24118 gaataacatagaaaaaacaa 24137

>emb|BX548010.5| Mouse DNA sequence from clone RP23-22P24 on chromosome X, complete
              sequence
          Length = 192853

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 173    aaataatttttgcctgattttcag 196
              ||||||||||||||| ||||||||
Sbjct: 118966 aaataatttttgcctaattttcag 118943

>gb|AF212832.5| Homo sapiens chromosome 8 clone CTC-806C5 map 8q24.3, complete sequence
          Length = 122029

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 236   catcatcatcagcatttcca 255
             ||||||||||||||||||||
Sbjct: 44656 catcatcatcagcatttcca 44637

>gb|AC160944.2| Pan troglodytes BAC clone CH251-7D22 from chromosome unknown, complete
             sequence
          Length = 191791

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 230   ccaggtcatcatcatcagca 249
             ||||||||||||||||||||
Sbjct: 37242 ccaggtcatcatcatcagca 37223

>emb|AL353997.3|HS37N07 Homo sapiens chromosome 17 from PAC  RPCI-1 37N07 map 17p11.2 region
              D17S842-D17S953, complete sequence
          Length = 175103

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 172    taaataatttttgcctgatt 191
              ||||||||||||||||||||
Sbjct: 167231 taaataatttttgcctgatt 167250

>gb|AC136500.1| Homo sapiens chromosome 5 clone RP11-56P2, complete sequence
          Length = 183967

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      gaataacatagaaaaaacaa 27
              ||||||||||||||||||||
Sbjct: 167540 gaataacatagaaaaaacaa 167559


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,992,212
Number of Sequences: 3902068
Number of extensions: 3992212
Number of successful extensions: 80222
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 80126
Number of HSP's gapped (non-prelim): 96
length of query: 336
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 314
effective length of database: 17,147,199,772
effective search space: 5384220728408
effective search space used: 5384220728408
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)