Clone Name | rbastl30d05 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_450166.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3570 Score = 89.7 bits (45), Expect = 8e-15 Identities = 72/81 (88%) Strand = Plus / Minus Query: 382 tgaaataattcacttctggtgactcttattttggttgattgaacctctgcttcgacatca 441 ||||||||||||||||| |||| |||||||||| |||||| |||||||||| ||||| Sbjct: 3247 tgaaataattcacttctattgacccttattttggctgattgcccctctgcttcaacatcg 3188 Query: 442 ttaacaactccccggcatttt 462 ||||||||||| ||||||||| Sbjct: 3187 ttaacaactccacggcatttt 3167
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 89.7 bits (45), Expect = 8e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 382 tgaaataattcacttctggtgactcttattttggttgattgaacctctgcttcgacatca 441 ||||||||||||||||| |||| |||||||||| |||||| |||||||||| ||||| Sbjct: 2549793 tgaaataattcacttctattgacccttattttggctgattgcccctctgcttcaacatcg 2549852 Query: 442 ttaacaactccccggcatttt 462 ||||||||||| ||||||||| Sbjct: 2549853 ttaacaactccacggcatttt 2549873
>dbj|AP005583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0406E03 Length = 201069 Score = 89.7 bits (45), Expect = 8e-15 Identities = 72/81 (88%) Strand = Plus / Plus Query: 382 tgaaataattcacttctggtgactcttattttggttgattgaacctctgcttcgacatca 441 ||||||||||||||||| |||| |||||||||| |||||| |||||||||| ||||| Sbjct: 136383 tgaaataattcacttctattgacccttattttggctgattgcccctctgcttcaacatcg 136442 Query: 442 ttaacaactccccggcatttt 462 ||||||||||| ||||||||| Sbjct: 136443 ttaacaactccacggcatttt 136463
>dbj|AK074022.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033074A15, full insert sequence Length = 3570 Score = 89.7 bits (45), Expect = 8e-15 Identities = 72/81 (88%) Strand = Plus / Minus Query: 382 tgaaataattcacttctggtgactcttattttggttgattgaacctctgcttcgacatca 441 ||||||||||||||||| |||| |||||||||| |||||| |||||||||| ||||| Sbjct: 3247 tgaaataattcacttctattgacccttattttggctgattgcccctctgcttcaacatcg 3188 Query: 442 ttaacaactccccggcatttt 462 ||||||||||| ||||||||| Sbjct: 3187 ttaacaactccacggcatttt 3167
>gb|AC007364.3| Homo sapiens BAC clone RP11-329H24 from 2, complete sequence Length = 200908 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 41 cacttaacataatgacttctaa 62 |||||||||||||||||||||| Sbjct: 43624 cacttaacataatgacttctaa 43603
>emb|AL136100.12| Human DNA sequence from clone RP11-534P19 on chromosome 6 Contains a pseudogene similar to zinc finger proteins, complete sequence Length = 172212 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 87 caaggaacactggaaatagtga 108 |||||||||||||||||||||| Sbjct: 158037 caaggaacactggaaatagtga 158016
>gb|AC127702.2| Homo sapiens BAC clone RP11-1386H14 from UL, complete sequence Length = 176969 Score = 44.1 bits (22), Expect = 0.40 Identities = 22/22 (100%) Strand = Plus / Minus Query: 87 caaggaacactggaaatagtga 108 |||||||||||||||||||||| Sbjct: 54709 caaggaacactggaaatagtga 54688
>gb|AC007441.9| Drosophila melanogaster clone BACR10E03, complete sequence Length = 195212 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 ctagaatcataaagtcggtca 282 ||||||||||||||||||||| Sbjct: 87523 ctagaatcataaagtcggtca 87543
>ref|NG_000004.2| Homo sapiens cytochrome P450, family 3, subfamily A (CYP3A) on chromosome 7 Length = 428605 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 373 tctttttgctgaaataattca 393 ||||||||||||||||||||| Sbjct: 25143 tctttttgctgaaataattca 25163
>gb|AC146138.2| Pan troglodytes BAC clone RP43-3D14 from 7, complete sequence Length = 176823 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 373 tctttttgctgaaataattca 393 ||||||||||||||||||||| Sbjct: 49083 tctttttgctgaaataattca 49063
>gb|AC146392.5| Pan troglodytes BAC clone RP43-57L13 from 7, complete sequence Length = 170470 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 373 tctttttgctgaaataattca 393 ||||||||||||||||||||| Sbjct: 20049 tctttttgctgaaataattca 20069
>gb|AC011904.3| Homo sapiens BAC clone CTD-3244O18 from 7, complete sequence Length = 113879 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 373 tctttttgctgaaataattca 393 ||||||||||||||||||||| Sbjct: 25143 tctttttgctgaaataattca 25163
>emb|AL590236.8| Human DNA sequence from clone RP11-145I17 on chromosome Xq21.1-21.33, complete sequence Length = 79387 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 cacttaacataatgacttcta 61 ||||||||||||||||||||| Sbjct: 46507 cacttaacataatgacttcta 46487
>emb|AL365254.14| Human DNA sequence from clone RP11-420H21 on chromosome 1, complete sequence Length = 157721 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 cacttaacataatgacttcta 61 ||||||||||||||||||||| Sbjct: 37343 cacttaacataatgacttcta 37323
>emb|AL354995.13| Human DNA sequence from clone RP11-512J14 on chromosome 13 Contains the 3' end of the DACH gene for dachshund homolog (Drosophila) (DACH1, FLJ10138), complete sequence Length = 149582 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 162 aatttcagttatggttggatt 182 ||||||||||||||||||||| Sbjct: 147093 aatttcagttatggttggatt 147113
>emb|AL034369.1|HSA149D17 Human DNA sequence from clone RP6-149D17 on chromosome Xq22.2-23 Contains the gene for a novel protein similar to pancreatic lipase-related protein 2 (PNLIPRP2), the 5' end of the COL4A6 gene for type IV alpha 6 collagen and the 5' end of the COL4A5 gene for type IV alpha 5 collagen (Alport syndrome), complete sequence Length = 122157 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 cacttaacataatgacttcta 61 ||||||||||||||||||||| Sbjct: 95717 cacttaacataatgacttcta 95737
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 342 ccttgggcatttccaggtact 362 ||||||||||||||||||||| Sbjct: 2595428 ccttgggcatttccaggtact 2595448
>gb|AC040977.10| Homo sapiens chromosome 17, clone RP11-589P10, complete sequence Length = 174741 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 41 cacttaacataatgacttcta 61 ||||||||||||||||||||| Sbjct: 55366 cacttaacataatgacttcta 55346
>gb|AC026182.4| Homo sapiens chromosome 3 clone RP11-279B12 map 3p, complete sequence Length = 167179 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 219 gacattccaccaaaaacaatgtgag 243 |||||| |||||||||||||||||| Sbjct: 38385 gacatttcaccaaaaacaatgtgag 38361
>gb|AC027763.9| Homo sapiens chromosome 17, clone RP11-530N7, complete sequence Length = 169770 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 41 cacttaacataatgacttcta 61 ||||||||||||||||||||| Sbjct: 48599 cacttaacataatgacttcta 48619
>gb|AC004977.2|AC004977 Homo sapiens PAC clone RP5-1152C17 from 7, complete sequence Length = 106473 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 373 tctttttgctgaaataattca 393 ||||||||||||||||||||| Sbjct: 70422 tctttttgctgaaataattca 70442
>gb|AC018833.3|AC018833 Homo sapiens chromosome 3 clone RP11-497I24, complete sequence Length = 145976 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 219 gacattccaccaaaaacaatgtgag 243 |||||| |||||||||||||||||| Sbjct: 16249 gacatttcaccaaaaacaatgtgag 16273
>gb|AE003703.3| Drosophila melanogaster chromosome 3R, section 41 of 118 of the complete sequence Length = 223948 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 262 ctagaatcataaagtcggtca 282 ||||||||||||||||||||| Sbjct: 22427 ctagaatcataaagtcggtca 22447
>gb|AC132239.4| Mus musculus BAC clone RP24-534D4 from 13, complete sequence Length = 163009 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 gctgtgcctgtagcaaggaacactg 98 |||||||||||||||||| |||||| Sbjct: 143997 gctgtgcctgtagcaaggcacactg 143973
>gb|AC129597.5| Mus musculus BAC clone RP23-262I17 from 13, complete sequence Length = 195537 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 74 gctgtgcctgtagcaaggaacactg 98 |||||||||||||||||| |||||| Sbjct: 1995 gctgtgcctgtagcaaggcacactg 1971
>gb|AC026214.4| Homo sapiens chromosome 3 clone RP11-717M12 map 3p, complete sequence Length = 174645 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 219 gacattccaccaaaaacaatgtgag 243 |||||| |||||||||||||||||| Sbjct: 135931 gacatttcaccaaaaacaatgtgag 135907
>gb|AC169801.2| Rhesus Macaque BAC CH250-205G14 (Children's Hospital Oakland Research Institute Rhesus macaque Adult Male BAC Library) complete sequence Length = 168949 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 42 acttaacataatgacttcta 61 |||||||||||||||||||| Sbjct: 94583 acttaacataatgacttcta 94564
>gb|AC132619.3| Mus musculus BAC clone RP23-195N4 from chromosome 7, complete sequence Length = 193890 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 369 ttagtctttttgctgaaata 388 |||||||||||||||||||| Sbjct: 109200 ttagtctttttgctgaaata 109219
>gb|AC111131.8| Mus musculus, clone RP23-340N7, complete sequence Length = 202386 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 aaatccaagccttgggcatt 352 |||||||||||||||||||| Sbjct: 94729 aaatccaagccttgggcatt 94710
>emb|AL671969.39| Mouse DNA sequence from clone RP23-339O7 on chromosome 11 Contains part of a novel gene and the Nmu2r gene for neuromedin U receptor 2, complete sequence Length = 118473 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 tcaataaatccaagccttgg 347 |||||||||||||||||||| Sbjct: 61671 tcaataaatccaagccttgg 61652
>emb|CR352230.8| Zebrafish DNA sequence from clone CH211-106G8 in linkage group 2, complete sequence Length = 168916 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gtaatctctgattatgtttg 143 |||||||||||||||||||| Sbjct: 124010 gtaatctctgattatgtttg 123991
>gb|AC011266.8| Homo sapiens chromosome 18, clone RP11-5A1, complete sequence Length = 167191 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 280 tcaatttgactatcacagca 299 |||||||||||||||||||| Sbjct: 97797 tcaatttgactatcacagca 97816
>gb|AC067819.10| Homo sapiens chromosome 18, clone RP11-585K6, complete sequence Length = 216972 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ccacttaacataatgacttc 59 |||||||||||||||||||| Sbjct: 61746 ccacttaacataatgacttc 61765
>gb|AC162947.2| Mus musculus BAC clone RP23-12D16 from chromosome 8, complete sequence Length = 230889 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tttttgctgaaataattcac 394 |||||||||||||||||||| Sbjct: 129841 tttttgctgaaataattcac 129860
>gb|AC162927.3| Mus musculus BAC clone RP23-269E12 from chromosome 9, complete sequence Length = 213948 Score = 40.1 bits (20), Expect = 6.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 374 ctttttgctgaaataattcacttc 397 ||||||||| |||||||||||||| Sbjct: 71247 ctttttgctcaaataattcacttc 71224
>gb|AC116574.6| Mus musculus BAC clone RP23-234F20 from chromosome 12, complete sequence Length = 191808 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 219 gacattccaccaaaaacaat 238 |||||||||||||||||||| Sbjct: 156079 gacattccaccaaaaacaat 156060
>gb|AC091491.3| Homo sapiens chromosome 3 clone RP11-15F1 map 3p, complete sequence Length = 152888 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 ccacttaacataatgacttc 59 |||||||||||||||||||| Sbjct: 48164 ccacttaacataatgacttc 48183
>emb|BX005255.10| Mouse DNA sequence from clone RP23-228N14 on chromosome X, complete sequence Length = 230114 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 aaatccaagccttgggcatt 352 |||||||||||||||||||| Sbjct: 78572 aaatccaagccttgggcatt 78553
>emb|CT485604.3| Pan troglodytes chromosome X clone PTB-004I10 map Xq28, complete sequence Length = 109609 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 cacttaacataatgacttct 60 |||||||||||||||||||| Sbjct: 72063 cacttaacataatgacttct 72082
>gb|AC127086.4| Mus musculus BAC clone RP24-540I5 from 8, complete sequence Length = 161316 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 375 tttttgctgaaataattcac 394 |||||||||||||||||||| Sbjct: 132946 tttttgctgaaataattcac 132965
>gb|AC147718.1| Gallus gallus BAC clone CH261-18A20 from chromosome unknown, complete sequence Length = 185989 Score = 40.1 bits (20), Expect = 6.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 256 gcattcctagaatcataaag 275 |||||||||||||||||||| Sbjct: 95783 gcattcctagaatcataaag 95802 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,343,496 Number of Sequences: 3902068 Number of extensions: 4343496 Number of successful extensions: 89785 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 89668 Number of HSP's gapped (non-prelim): 117 length of query: 462 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 440 effective length of database: 17,147,199,772 effective search space: 7544767899680 effective search space used: 7544767899680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)