ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbastl30d02 |
|---|---|
| Clone Library Name | barley_pub |
>TRUA_MYCTU (P65846) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 297 Score = 31.6 bits (70), Expect = 0.95 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Frame = +1 Query: 55 VHNFSSVTRH--GNHTISDRQRVSLQGSKNSFTRRFVSAIFHMLLERTVPTAQDSVTRSR 228 +H+F++ RH G TI D QR+ + T + F + R++ A +V R Sbjct: 185 LHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHR 244 Query: 229 RATQW-RPLSDGVGR 270 RAT W R L GR Sbjct: 245 RATTWCRELLTATGR 259
>TRUA_MYCBO (P65847) tRNA pseudouridine synthase A (EC 5.4.99.12) (tRNA-uridine| isomerase I) (tRNA pseudouridylate synthase I) Length = 297 Score = 31.6 bits (70), Expect = 0.95 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 3/75 (4%) Frame = +1 Query: 55 VHNFSSVTRH--GNHTISDRQRVSLQGSKNSFTRRFVSAIFHMLLERTVPTAQDSVTRSR 228 +H+F++ RH G TI D QR+ + T + F + R++ A +V R Sbjct: 185 LHDFAAFCRHREGATTIRDLQRLDWSRAGTLVTAHVTADAFCWSMVRSLVGALLAVGEHR 244 Query: 229 RATQW-RPLSDGVGR 270 RAT W R L GR Sbjct: 245 RATTWCRELLTATGR 259
>IRAK1_MOUSE (Q62406) Interleukin-1 receptor-associated kinase 1 (EC 2.7.11.1)| (IRAK-1) (IRAK) (Pelle-like protein kinase) (mPLK) Length = 710 Score = 29.6 bits (65), Expect = 3.6 Identities = 18/70 (25%), Positives = 32/70 (45%) Frame = +1 Query: 157 VSAIFHMLLERTVPTAQDSVTRSRRATQWRPLSDGVGRRNAGRGRSCCAAGSASGPWRPQ 336 V+ + H+L + A+D +T W P + V A S +AGS +G W P+ Sbjct: 80 VADLVHILTHLQLLRARDIITA------WHPPAPVVPPSTAAPRPSSISAGSEAGDWSPR 133 Query: 337 RASGQHSSWI 366 + S+++ Sbjct: 134 KLQSSASTFL 143
>CYLD_HUMAN (Q9NQC7) Probable ubiquitin carboxyl-terminal hydrolase CYLD (EC| 3.1.2.15) (Ubiquitin thioesterase CYLD) (Ubiquitin-specific-processing protease CYLD) (Deubiquitinating enzyme CYLD) Length = 956 Score = 29.6 bits (65), Expect = 3.6 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +1 Query: 193 VPTAQDSVTRSRRATQWRPLSDGVGRRNAGRGRSCCAAGSASGPWRPQRA 342 +P +SVT+ RR + +S GVG + + A GS S P R+ Sbjct: 303 IPALSESVTQERRPPKLAFMSRGVGDKGSSSHNKPKATGSTSDPGNRNRS 352
>EBNA2_EBVG (Q3KSV2) Epstein-Barr nuclear antigen 2 (EBV nuclear antigen 2)| (EBNA-2) (EBNA2) Length = 451 Score = 29.6 bits (65), Expect = 3.6 Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Frame = +1 Query: 196 PTAQDSVTRSRRATQWRPLSDGVGR-RNAGRGRSCCAAGSASGPWRPQ 336 P D S+ Q R S G GR R GRG+S GPWRP+ Sbjct: 291 PPICDPPQPSKTQGQSRGQSRGRGRGRGRGRGKSRDKQRKPGGPWRPE 338
>ACM1_DROME (P16395) Muscarinic acetylcholine receptor DM1| Length = 805 Score = 29.3 bits (64), Expect = 4.7 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 1/62 (1%) Frame = -1 Query: 437 AEGGGVVTPGRGRAGGELLQQPP*IQEECCPEAR*GRQ-GPEADPAAQQLLPLPAFRRPT 261 A GG PG G A L +Q +C P + + GP AA L A RRP Sbjct: 586 AANGGGGGPGAGAAASASLS----MQGDCAPSIKMIHEDGPTTTAAAAPLASAAATRRPL 641 Query: 260 PS 255 PS Sbjct: 642 PS 643
>FGRL1_RAT (Q7TQM3) Fibroblast growth factor receptor-like 1 precursor (FGF| receptor-like protein 1) Length = 529 Score = 29.3 bits (64), Expect = 4.7 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Frame = +2 Query: 185 KEPCQLLRTAS------PGAGGQRSGVLSATELVAGTRAEGGAVVQQDQLQAPGVLNGPR 346 K+PC T PG +RSG L G E G+ + + APG GP+ Sbjct: 399 KKPCAPASTLPVPGHRPPGTSRERSGDKDLPSLAVGICEEHGSTMAPQHILAPGSTAGPK 458
>ARMX2_HUMAN (Q7L311) Armadillo repeat-containing X-linked protein 2 (Protein| ALEX2) (ARM protein lost in epithelial cancers on chromosome X 2) Length = 632 Score = 29.3 bits (64), Expect = 4.7 Identities = 23/100 (23%), Positives = 37/100 (37%), Gaps = 2/100 (2%) Frame = +2 Query: 71 QSPGMAIIPYQTDSVFHCKDQRTRLPGVLYLPFFTCYLKEPCQLLRTASPGAGGQRSGVL 250 ++P MA P ++ + R +P +P E + A+P + GV Sbjct: 153 EAPAMAGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEGPGVAAPTKVAEAPGVA 212 Query: 251 SATELVAGT--RAEGGAVVQQDQLQAPGVLNGPRGSIPPG 364 S TE GA ++PG PR ++ PG Sbjct: 213 SPTEAAEAPVPATPTGAAAPTGAAESPGTSGSPRTAVVPG 252
>STE11_SCHPO (P36631) Transcription factor ste11| Length = 468 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%) Frame = +3 Query: 186 KNRANCSGQRHQEQEGNAVASSQRRSWSPERGQREELL-CSRISFRPLASS 335 +N +NCS +R + + S Q S SPE + L CS I RP S Sbjct: 257 QNSSNCSARRVPKFDSKGTVSEQSNSDSPELSADKVLSHCSPIDARPSTPS 307
>Y004_MYCPA (Q9L7L4) UPF0232 protein MAP_0004| Length = 181 Score = 28.5 bits (62), Expect = 8.1 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = +1 Query: 196 PTAQDSVTRSRRATQWRPLSDGVGRRNAGRGRSCCAAGSASGPWRPQRASGQHSSW 363 PTA D V R+ + + G ++AGRGR+ P+R +GQ SW Sbjct: 13 PTAMDLVRRTLEEARAAARAQG---KDAGRGRAAAPT--------PRRVAGQRRSW 57
>VE2_HPV08 (P06422) Regulatory protein E2| Length = 498 Score = 28.5 bits (62), Expect = 8.1 Identities = 31/114 (27%), Positives = 47/114 (41%), Gaps = 5/114 (4%) Frame = +1 Query: 31 SRLPTCITVHNFSSVTRHGNHTISDRQRVSLQGS----KNSFTRRFVSAIFHMLLERTVP 198 SR T + S V G+ T+S + SL + S +R +A R P Sbjct: 267 SRHRTRSRSRSLSRVRAVGSTTVSRSRSSSLTKAVRPRSRSRSRGRATATSRRRAGRGSP 326 Query: 199 TAQDSVTRSRRATQWRPLSDGVGRRNAGRG-RSCCAAGSASGPWRPQRASGQHS 357 + S +RS ++ G GRR GRG R S++ P +R+ G+ S Sbjct: 327 RRRRSTSRSPSTNTFKRSQRGGGRRGRGRGSRGRRERSSSTSPTPTKRSRGESS 380
>E41L4_BRARE (O57457) Band 4.1-like protein 4 (Nbl4 protein)| Length = 619 Score = 28.5 bits (62), Expect = 8.1 Identities = 20/81 (24%), Positives = 39/81 (48%), Gaps = 1/81 (1%) Frame = +1 Query: 46 CITVHNFSSVTRHGNHTISDR-QRVSLQGSKNSFTRRFVSAIFHMLLERTVPTAQDSVTR 222 C+ H F + + +++++ + + S GSK+ ++ + I E T+P A V R Sbjct: 288 CVEHHTFFRMPENESNSLTRKLSKFSSLGSKHRYSGKTAMQIGRESTE-TLPRADLQVIR 346 Query: 223 SRRATQWRPLSDGVGRRNAGR 285 +R T + + GR N G+ Sbjct: 347 TRSKTYPKRSTQPAGRNNGGQ 367
>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like| protein) Length = 349 Score = 28.5 bits (62), Expect = 8.1 Identities = 16/48 (33%), Positives = 22/48 (45%) Frame = -3 Query: 363 PGGMLPRGPLRTPGA*S*SCCTTAPPSARVPATNSVAERTPLRCPPAP 220 PG P G +P + S T+PP + P + S +P PPAP Sbjct: 175 PGSTTPPGGAHSPKSSSAVSPATSPPGSMAPKSGSPV--SPTTSPPAP 220
>AHNK_HUMAN (Q09666) Neuroblast differentiation-associated protein AHNAK| (Desmoyokin) (Fragments) Length = 2960 Score = 28.5 bits (62), Expect = 8.1 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 13/61 (21%) Frame = +2 Query: 221 GAGGQRSG--VLSATEL----------VAGTRAEGGAVVQQDQLQAPGV-LNGPRGSIPP 361 G+GG+ G V SA L +G + EGG Q LQAPG+ ++GP+G + Sbjct: 2662 GSGGEWKGPQVSSALNLDTSKFAGGLHFSGPKVEGGVKGGQIGLQAPGLSVSGPQGHLES 2721 Query: 362 G 364 G Sbjct: 2722 G 2722
>GCP4_DROME (Q9VKU7) Gamma-tubulin complex component 4 homolog (Gamma ring| complex protein 75) (dGrip75) Length = 650 Score = 28.5 bits (62), Expect = 8.1 Identities = 15/58 (25%), Positives = 30/58 (51%) Frame = +1 Query: 10 LCHVHILSRLPTCITVHNFSSVTRHGNHTISDRQRVSLQGSKNSFTRRFVSAIFHMLL 183 + +H+L+ L C+ +HN HG+ + ++ ++ KN+ F S++ H LL Sbjct: 133 ITEIHVLN-LRGCVLLHNLHQQCEHGDIQLEKAIKIIMKPVKNA----FFSSLAHWLL 185
>CS029_MOUSE (Q9CS00) Protein C19orf29 homolog| Length = 772 Score = 28.5 bits (62), Expect = 8.1 Identities = 10/29 (34%), Positives = 17/29 (58%) Frame = +3 Query: 186 KNRANCSGQRHQEQEGNAVASSQRRSWSP 272 +N+++CS + +G+ RRSWSP Sbjct: 105 QNQSSCSDSGEERAQGSWARKGHRRSWSP 133 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,820,421 Number of Sequences: 219361 Number of extensions: 1403042 Number of successful extensions: 4601 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4357 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4595 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2735358828 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
