ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30d02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome... 70 7e-09
2gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome... 70 7e-09
3dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 70 7e-09
4dbj|AK099115.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
5dbj|AK064084.1| Oryza sativa (japonica cultivar-group) cDNA clon... 70 7e-09
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 70 7e-09
7dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
8dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
9emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome comple... 46 0.098
10dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 44 0.39
11emb|CT010581.10| Mouse DNA sequence from clone RP23-104J14 on ch... 42 1.5
12emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 42 1.5
13emb|AJ341788.1|HSA341788 Homo sapiens genomic sequence surroundi... 42 1.5
14emb|AJ342133.1|HSA342133 Homo sapiens genomic sequence surroundi... 42 1.5
15emb|AJ341813.1|HSA341813 Homo sapiens genomic sequence surroundi... 42 1.5
16emb|AJ341808.1|HSA341808 Homo sapiens genomic sequence surroundi... 42 1.5
17gb|AC154814.2| Mus musculus BAC clone RP24-532L22 from 16, compl... 42 1.5
18emb|AJ323247.1|HSA323247 Homo sapiens genomic sequence surroundi... 42 1.5
19emb|BX248515.4| Zebrafish DNA sequence from clone DKEY-177P2 in ... 42 1.5
20gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.5
21gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete... 42 1.5
22gb|U67315.1|PAU67315 Pseudomonas alcaligenes insertion sequences... 42 1.5
23ref|XM_365485.1| Magnaporthe grisea 70-15 predicted protein (MG0... 40 6.0
24gb|AC079741.5| Homo sapiens BAC clone CTD-2252G20 from 7, comple... 40 6.0
25gb|AC146143.2| Pan troglodytes BAC clone RP43-37I19 from 7, comp... 40 6.0
26gb|AC159240.3| Mus musculus BAC clone RP24-555M20 from chromosom... 40 6.0
27emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete ... 40 6.0
28emb|BX927082.9| Zebrafish DNA sequence from clone DKEY-182O15 in... 40 6.0
29emb|CR792423.5| Zebrafish DNA sequence from clone CH211-190H10 i... 40 6.0
30emb|CR388095.8| Zebrafish DNA sequence from clone CH211-199M9 in... 40 6.0
31gb|AE012343.1| Xanthomonas campestris pv. campestris str. ATCC 3... 40 6.0
32gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, ... 40 6.0
33emb|BX005193.17| Zebrafish DNA sequence from clone CH211-146M5, ... 40 6.0
34gb|AC154182.2| Mus musculus BAC clone RP23-471C19 from chromosom... 40 6.0
35dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 40 6.0
36emb|CT025771.7| Zebrafish DNA sequence from clone DKEY-20I10 in ... 40 6.0
37emb|AL772301.7| Mouse DNA sequence from clone RP23-111F12 on chr... 40 6.0
38gb|AC145559.4| Mus musculus BAC clone RP23-371A1 from 5, complet... 40 6.0
39emb|AL691505.12| Mouse DNA sequence from clone RP23-82B19 on chr... 40 6.0 
>gb|AC128643.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0007B15 map S10318, complete sequence
          Length = 125243

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 99/118 (83%), Gaps = 3/118 (2%)
 Strand = Plus / Plus

                                                                         
Query: 297   ttgtgcagcaggatcagcttcaggcccctggcgtcctcaacgggcctcggggcagcattc 356
             ||||||||||||||||||||||||||| |||||  ||| | |||||| |||  | |  ||
Sbjct: 81491 ttgtgcagcaggatcagcttcaggcccttggcgggctccatgggccttggg--atc-ctc 81547

                                                                       
Query: 357   ctcctggattcacggtggctgttgtagtagttctccgccagcgcggcctcgtccaggc 414
             ||||||| | || ||||||||||||||||||||||| |||| |  | |||||||||||
Sbjct: 81548 ctcctggctccatggtggctgttgtagtagttctcctccagggtagtctcgtccaggc 81605
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>gb|AC123897.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0055G24 map S20116S, complete sequence
          Length = 174210

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 99/118 (83%), Gaps = 3/118 (2%)
 Strand = Plus / Plus

                                                                        
Query: 297  ttgtgcagcaggatcagcttcaggcccctggcgtcctcaacgggcctcggggcagcattc 356
            ||||||||||||||||||||||||||| |||||  ||| | |||||| |||  | |  ||
Sbjct: 4673 ttgtgcagcaggatcagcttcaggcccttggcgggctccatgggccttggg--atc-ctc 4729

                                                                      
Query: 357  ctcctggattcacggtggctgttgtagtagttctccgccagcgcggcctcgtccaggc 414
            ||||||| | || ||||||||||||||||||||||| |||| |  | |||||||||||
Sbjct: 4730 ctcctggctccatggtggctgttgtagtagttctcctccagggtagtctcgtccaggc 4787
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 99/118 (83%), Gaps = 3/118 (2%)
 Strand = Plus / Plus

                                                                           
Query: 297     ttgtgcagcaggatcagcttcaggcccctggcgtcctcaacgggcctcggggcagcattc 356
               ||||||||||||||||||||||||||| |||||  ||| | |||||| |||  | |  ||
Sbjct: 3487536 ttgtgcagcaggatcagcttcaggcccttggcgggctccatgggccttggg--atc-ctc 3487592

                                                                         
Query: 357     ctcctggattcacggtggctgttgtagtagttctccgccagcgcggcctcgtccaggc 414
               ||||||| | || ||||||||||||||||||||||| |||| |  | |||||||||||
Sbjct: 3487593 ctcctggctccatggtggctgttgtagtagttctcctccagggtagtctcgtccaggc 3487650
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>dbj|AK099115.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038C07, full
            insert sequence
          Length = 3784

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 99/118 (83%), Gaps = 3/118 (2%)
 Strand = Plus / Minus

                                                                        
Query: 297  ttgtgcagcaggatcagcttcaggcccctggcgtcctcaacgggcctcggggcagcattc 356
            ||||||||||||||||||||||||||| |||||  ||| | |||||| |||  | |  ||
Sbjct: 3489 ttgtgcagcaggatcagcttcaggcccttggcgggctccatgggccttggg--atc-ctc 3433

                                                                      
Query: 357  ctcctggattcacggtggctgttgtagtagttctccgccagcgcggcctcgtccaggc 414
            ||||||| | || ||||||||||||||||||||||| |||| |  | |||||||||||
Sbjct: 3432 ctcctggctccatggtggctgttgtagtagttctcctccagggtagtctcgtccaggc 3375
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>dbj|AK064084.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B10, full
            insert sequence
          Length = 1705

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 99/118 (83%), Gaps = 3/118 (2%)
 Strand = Plus / Minus

                                                                        
Query: 297  ttgtgcagcaggatcagcttcaggcccctggcgtcctcaacgggcctcggggcagcattc 356
            ||||||||||||||||||||||||||| |||||  ||| | |||||| |||  | |  ||
Sbjct: 1446 ttgtgcagcaggatcagcttcaggcccttggcgggctccatgggccttggg--atc-ctc 1390

                                                                      
Query: 357  ctcctggattcacggtggctgttgtagtagttctccgccagcgcggcctcgtccaggc 414
            ||||||| | || ||||||||||||||||||||||| |||| |  | |||||||||||
Sbjct: 1389 ctcctggctccatggtggctgttgtagtagttctcctccagggtagtctcgtccaggc 1332
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 99/118 (83%), Gaps = 3/118 (2%)
 Strand = Plus / Plus

                                                                           
Query: 297     ttgtgcagcaggatcagcttcaggcccctggcgtcctcaacgggcctcggggcagcattc 356
               ||||||||||||||||||||||||||| |||||  ||| | |||||| |||  | |  ||
Sbjct: 3496240 ttgtgcagcaggatcagcttcaggcccttggcgggctccatgggccttggg--atc-ctc 3496296

                                                                         
Query: 357     ctcctggattcacggtggctgttgtagtagttctccgccagcgcggcctcgtccaggc 414
               ||||||| | || ||||||||||||||||||||||| |||| |  | |||||||||||
Sbjct: 3496297 ctcctggctccatggtggctgttgtagtagttctcctccagggtagtctcgtccaggc 3496354
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 28       ctctctcgtcttccaacttgcatcac 53
                ||||||||||||||||||||||||||
Sbjct: 28961613 ctctctcgtcttccaacttgcatcac 28961588
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>dbj|AP005167.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0060O17
          Length = 180015

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                       
Query: 28    ctctctcgtcttccaacttgcatcac 53
             ||||||||||||||||||||||||||
Sbjct: 79150 ctctctcgtcttccaacttgcatcac 79125
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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 46.1 bits (23), Expect = 0.098
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 391   ccgccagcgcggcctcgtccagg 413
             |||||||||||||||||||||||
Sbjct: 49468 ccgccagcgcggcctcgtccagg 49490
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 391     ccgccagcgcggcctcgtccag 412
               ||||||||||||||||||||||
Sbjct: 4037265 ccgccagcgcggcctcgtccag 4037286
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>emb|CT010581.10| Mouse DNA sequence from clone RP23-104J14 on chromosome 16, complete
             sequence
          Length = 218225

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    tcatgttcacattctctctcg 35
             |||||||||||||||||||||
Sbjct: 77794 tcatgttcacattctctctcg 77814
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 389    ctccgccagcgcggcctcgtccagg 413
              |||| ||||||||||||||||||||
Sbjct: 847441 ctcctccagcgcggcctcgtccagg 847465
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>emb|AJ341788.1|HSA341788 Homo sapiens genomic sequence surrounding NotI site, clone
           HSJ-EC11RS
          Length = 680

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 391 ccgccagcgcggcctcgtcca 411
           |||||||||||||||||||||
Sbjct: 5   ccgccagcgcggcctcgtcca 25
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>emb|AJ342133.1|HSA342133 Homo sapiens genomic sequence surrounding NotI site, clone
           HSJ-4AE6RS
          Length = 723

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 391 ccgccagcgcggcctcgtcca 411
           |||||||||||||||||||||
Sbjct: 5   ccgccagcgcggcctcgtcca 25
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>emb|AJ341813.1|HSA341813 Homo sapiens genomic sequence surrounding NotI site, clone
           HSJ-EK18RS
          Length = 713

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 391 ccgccagcgcggcctcgtcca 411
           |||||||||||||||||||||
Sbjct: 5   ccgccagcgcggcctcgtcca 25
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>emb|AJ341808.1|HSA341808 Homo sapiens genomic sequence surrounding NotI site, clone
           HSJ-EJ16RS
          Length = 717

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 391 ccgccagcgcggcctcgtcca 411
           |||||||||||||||||||||
Sbjct: 5   ccgccagcgcggcctcgtcca 25
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>gb|AC154814.2| Mus musculus BAC clone RP24-532L22 from 16, complete sequence
          Length = 155332

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 15    tcatgttcacattctctctcg 35
             |||||||||||||||||||||
Sbjct: 95871 tcatgttcacattctctctcg 95891
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>emb|AJ323247.1|HSA323247 Homo sapiens genomic sequence surrounding NotI site, clone JNB-158R
          Length = 439

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 391 ccgccagcgcggcctcgtcca 411
           |||||||||||||||||||||
Sbjct: 5   ccgccagcgcggcctcgtcca 25
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>emb|BX248515.4| Zebrafish DNA sequence from clone DKEY-177P2 in linkage group 20,
             complete sequence
          Length = 212105

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 215   tcaccaggagcaggagggcaacgca 239
             |||||||||||||||| ||||||||
Sbjct: 67817 tcaccaggagcaggagagcaacgca 67841
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 394     ccagcgcggcctcgtccaggc 414
               |||||||||||||||||||||
Sbjct: 2288766 ccagcgcggcctcgtccaggc 2288746
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>gb|AE001825.1| Deinococcus radiodurans R1 chromosome 2, complete sequence
          Length = 412348

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 410    caggcgtgaccacgccgcccc 430
              |||||||||||||||||||||
Sbjct: 164726 caggcgtgaccacgccgcccc 164706
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>gb|U67315.1|PAU67315 Pseudomonas alcaligenes insertion sequences IS1474 and IS1475,
           putative transposase subunit genes, complete cds
          Length = 4601

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 391 ccgccagcgcggcctcgtcca 411
           |||||||||||||||||||||
Sbjct: 442 ccgccagcgcggcctcgtcca 422
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>ref|XM_365485.1| Magnaporthe grisea 70-15 predicted protein (MG02187.4) partial mRNA
          Length = 2484

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 274 aacgcgggcagagggaggag 293
           ||||||||||||||||||||
Sbjct: 370 aacgcgggcagagggaggag 389
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>gb|AC079741.5| Homo sapiens BAC clone CTD-2252G20 from 7, complete sequence
          Length = 36722

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 280   ggcagagggaggagctgttg 299
             ||||||||||||||||||||
Sbjct: 20039 ggcagagggaggagctgttg 20058
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>gb|AC146143.2| Pan troglodytes BAC clone RP43-37I19 from 7, complete sequence
          Length = 188333

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 280    ggcagagggaggagctgttg 299
              ||||||||||||||||||||
Sbjct: 177641 ggcagagggaggagctgttg 177660
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>gb|AC159240.3| Mus musculus BAC clone RP24-555M20 from chromosome 5, complete sequence
          Length = 197104

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    ttctcatcagtcaccaggca 83
             ||||||||||||||||||||
Sbjct: 85481 ttctcatcagtcaccaggca 85500
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>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29
          Length = 302007

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 214   gtcaccaggagcaggagggc 233
             ||||||||||||||||||||
Sbjct: 35586 gtcaccaggagcaggagggc 35567
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>emb|BX927082.9| Zebrafish DNA sequence from clone DKEY-182O15 in linkage group 13,
             complete sequence
          Length = 157140

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 12    ttgtcatgttcacattctct 31
             ||||||||||||||||||||
Sbjct: 63773 ttgtcatgttcacattctct 63792
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>emb|CR792423.5| Zebrafish DNA sequence from clone CH211-190H10 in linkage group 5,
             complete sequence
          Length = 154548

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   ctgccatttttcacatgcta 180
             ||||||||||||||||||||
Sbjct: 21823 ctgccatttttcacatgcta 21804
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>emb|CR388095.8| Zebrafish DNA sequence from clone CH211-199M9 in linkage group 14,
             complete sequence
          Length = 208632

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   tttcactgcaaggatcaaag 135
             ||||||||||||||||||||
Sbjct: 42732 tttcactgcaaggatcaaag 42751
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>gb|AE012343.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 251
            of 460 of the complete genome
          Length = 12314

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 395  cagcgcggcctcgtccaggc 414
            ||||||||||||||||||||
Sbjct: 8531 cagcgcggcctcgtccaggc 8550
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>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 395     cagcgcggcctcgtccaggc 414
               ||||||||||||||||||||
Sbjct: 2142502 cagcgcggcctcgtccaggc 2142483
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>emb|BX005193.17| Zebrafish DNA sequence from clone CH211-146M5, complete sequence
          Length = 169110

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 226   aggagggcaacgcagtggcg 245
             ||||||||||||||||||||
Sbjct: 12778 aggagggcaacgcagtggcg 12759
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>gb|AC154182.2| Mus musculus BAC clone RP23-471C19 from chromosome 16, complete
             sequence
          Length = 180782

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   agcattcctcctggattcac 369
             ||||||||||||||||||||
Sbjct: 96932 agcattcctcctggattcac 96951
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 389     ctccgccagcgcggcctcgtccag 412
               |||||||||||| |||||||||||
Sbjct: 6206375 ctccgccagcgccgcctcgtccag 6206398
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>emb|CT025771.7| Zebrafish DNA sequence from clone DKEY-20I10 in linkage group 13,
            complete sequence
          Length = 190607

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 226  aggagggcaacgcagtggcg 245
            ||||||||||||||||||||
Sbjct: 4356 aggagggcaacgcagtggcg 4375
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>emb|AL772301.7| Mouse DNA sequence from clone RP23-111F12 on chromosome 2, complete
              sequence
          Length = 187665

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    gttttgtatctgccattttt 171
              ||||||||||||||||||||
Sbjct: 142920 gttttgtatctgccattttt 142939
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>gb|AC145559.4| Mus musculus BAC clone RP23-371A1 from 5, complete sequence
          Length = 203726

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    ttctcatcagtcaccaggca 83
             ||||||||||||||||||||
Sbjct: 21651 ttctcatcagtcaccaggca 21632
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>emb|AL691505.12| Mouse DNA sequence from clone RP23-82B19 on chromosome 10, complete
              sequence
          Length = 220450

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 281    gcagagggaggagctgttgt 300
              ||||||||||||||||||||
Sbjct: 167018 gcagagggaggagctgttgt 167037


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,726,041
Number of Sequences: 3902068
Number of extensions: 3726041
Number of successful extensions: 78048
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77536
Number of HSP's gapped (non-prelim): 512
length of query: 449
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 427
effective length of database: 17,147,199,772
effective search space: 7321854302644
effective search space used: 7321854302644
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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