ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1UR2R_MACMU (Q8HYC3) Urotensin II receptor (UR-II-R) 29 6.2
2CET1_DEBHA (Q6BND2) mRNA capping enzyme beta subunit (EC 3.1.3.3... 28 8.1

>UR2R_MACMU (Q8HYC3) Urotensin II receptor (UR-II-R)|
          Length = 389

 Score = 28.9 bits (63), Expect = 6.2
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 10/74 (13%)
 Frame = +1

Query: 217 WKKQAHYNY-----RTAKLTTVITRHRLVQTSWS---LTS*LKRAYQRACPGSEADPG-- 366
           W+  A Y       RTA++   +T       S +   L + L R Y+    G    PG  
Sbjct: 277 WQLLAQYREAPLAPRTARIVNYLTTCLTYGNSCANPFLYTLLTRNYRDHLRGRVRSPGSG 336

Query: 367 GVQGPVPVLLPEAR 408
           GV+GPVP L P AR
Sbjct: 337 GVRGPVPSLQPRAR 350



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>CET1_DEBHA (Q6BND2) mRNA capping enzyme beta subunit (EC 3.1.3.33)|
           (Polynucleotide 5'-triphosphatase) (mRNA
           5'-triphosphatase) (TPase)
          Length = 476

 Score = 28.5 bits (62), Expect = 8.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 157 NLLNIPCPSPHHITNSTYQAWKKQAHYNYR 246
           NLLN P P+    T  T + W +  H N+R
Sbjct: 40  NLLNDPAPNNELKTKETKKDWSEDEHSNFR 69


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,186,034
Number of Sequences: 219361
Number of extensions: 1071203
Number of successful extensions: 2400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2341
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2400
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2735358828
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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