Clone Name | rbastl30d01 |
---|---|
Clone Library Name | barley_pub |
>emb|CR759819.7| Zebrafish DNA sequence from clone CH211-178L23, complete sequence Length = 118312 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 184 ccacatcacataactaacagcacgta 209 |||||||||||||||||||| ||||| Sbjct: 93720 ccacatcacataactaacagtacgta 93745
>gb|AC092819.2| Homo sapiens chromosome 8, clone RP11-716D16, complete sequence Length = 153310 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Minus Query: 90 caaagcaaacctcagagatttttaca 115 ||||||||||| |||||||||||||| Sbjct: 126254 caaagcaaaccccagagatttttaca 126229
>gb|AC024601.9| Homo sapiens chromosome 10 clone RP11-262I2, complete sequence Length = 169293 Score = 44.1 bits (22), Expect = 0.39 Identities = 22/22 (100%) Strand = Plus / Minus Query: 88 atcaaagcaaacctcagagatt 109 |||||||||||||||||||||| Sbjct: 72312 atcaaagcaaacctcagagatt 72291
>emb|CR354606.12| Zebrafish DNA sequence from clone CH211-252L23 in linkage group 18, complete sequence Length = 138838 Score = 44.1 bits (22), Expect = 0.39 Identities = 25/26 (96%) Strand = Plus / Plus Query: 184 ccacatcacataactaacagcacgta 209 |||||||||||||||||||| ||||| Sbjct: 108314 ccacatcacataactaacagtacgta 108339
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 110 tttacacatactcctccctaatcta 134 |||||| |||||||||||||||||| Sbjct: 14230055 tttacatatactcctccctaatcta 14230079 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 392 tccttccagaagcacgtgtcgggcgccagccg 423 |||||||||||||| | |||||||||||||| Sbjct: 14230274 tccttccagaagcaggcatcgggcgccagccg 14230305
>dbj|AP004992.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0022O02 Length = 176625 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 110 tttacacatactcctccctaatcta 134 |||||| |||||||||||||||||| Sbjct: 73519 tttacatatactcctccctaatcta 73543 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Plus Query: 392 tccttccagaagcacgtgtcgggcgccagccg 423 |||||||||||||| | |||||||||||||| Sbjct: 73738 tccttccagaagcaggcatcgggcgccagccg 73769
>dbj|AK121496.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033001G17, full insert sequence Length = 2971 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 110 tttacacatactcctccctaatcta 134 |||||| |||||||||||||||||| Sbjct: 2919 tttacatatactcctccctaatcta 2895 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 392 tccttccagaagcacgtgtcgggcgccagccg 423 |||||||||||||| | |||||||||||||| Sbjct: 2700 tccttccagaagcaggcatcgggcgccagccg 2669
>gb|AC116413.12| Mus musculus chromosome 8, clone RP24-84J11, complete sequence Length = 210471 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 atgtatgtagtaacttgctt 165 |||||||||||||||||||| Sbjct: 167602 atgtatgtagtaacttgctt 167621
>emb|AL732431.19| Human DNA sequence from clone XXyac-36GH4 on chromosome 6 Contains the gene for acid sphingomyelinase-like phosphodiesterase 3a (ASML3A), an H+ transporting mitochondrial F0 complex ATP synthase subunit g (ATP5L) pseudogene and two CpG islands, complete sequence Length = 164746 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 atcatgttcttttttaggta 28 |||||||||||||||||||| Sbjct: 140619 atcatgttcttttttaggta 140600
>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome Length = 5373180 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 tgttcttttttaggtaatgt 32 |||||||||||||||||||| Sbjct: 2957446 tgttcttttttaggtaatgt 2957427
>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16 Length = 349315 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 351 agaagccgatcccggtggcg 370 |||||||||||||||||||| Sbjct: 338808 agaagccgatcccggtggcg 338789
>gb|AC118557.2| Homo sapiens chromosome 1 clone RP11-499N7, complete sequence Length = 168688 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 221 aaaaacaagctcactacaat 240 |||||||||||||||||||| Sbjct: 126103 aaaaacaagctcactacaat 126122
>gb|AC156989.3| Mus musculus chromosome 1, clone RP23-379L2, complete sequence Length = 188691 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 81 aaagcatatcaaagcaaacctcag 104 ||||||||| |||||||||||||| Sbjct: 94489 aaagcatatgaaagcaaacctcag 94512
>emb|BX511205.2|RN120J22 Rattus norvegicus chromosome 1 BAC RP32-120J22, complete sequence Length = 160764 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 205 acgtaccaagcatggaaaaa 224 |||||||||||||||||||| Sbjct: 108680 acgtaccaagcatggaaaaa 108699
>dbj|AK060651.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H04, full insert sequence Length = 1348 Score = 40.1 bits (20), Expect = 6.1 Identities = 29/32 (90%) Strand = Plus / Minus Query: 392 tccttccagaagcacgtgtcgggcgccagccg 423 |||||||||||||| | |||||||||||||| Sbjct: 1117 tccttccagaagcaggcatcgggcgccagccg 1086
>emb|AL672054.5| Mouse DNA sequence from clone RP23-237I22 on chromosome X, complete sequence Length = 187770 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 212 aagcatggaaaaaacaagct 231 |||||||||||||||||||| Sbjct: 66693 aagcatggaaaaaacaagct 66712 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,731,098 Number of Sequences: 3902068 Number of extensions: 3731098 Number of successful extensions: 65629 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 65560 Number of HSP's gapped (non-prelim): 69 length of query: 451 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 429 effective length of database: 17,147,199,772 effective search space: 7356148702188 effective search space used: 7356148702188 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)