ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30d01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR759819.7| Zebrafish DNA sequence from clone CH211-178L23, ... 44 0.39
2gb|AC092819.2| Homo sapiens chromosome 8, clone RP11-716D16, com... 44 0.39
3gb|AC024601.9| Homo sapiens chromosome 10 clone RP11-262I2, comp... 44 0.39
4emb|CR354606.12| Zebrafish DNA sequence from clone CH211-252L23 ... 44 0.39
5dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
6dbj|AP004992.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.5
7dbj|AK121496.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.5
8gb|AC116413.12| Mus musculus chromosome 8, clone RP24-84J11, com... 40 6.1
9emb|AL732431.19| Human DNA sequence from clone XXyac-36GH4 on ch... 40 6.1
10gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome 40 6.1
11emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genom... 40 6.1
12gb|AC118557.2| Homo sapiens chromosome 1 clone RP11-499N7, compl... 40 6.1
13gb|AC156989.3| Mus musculus chromosome 1, clone RP23-379L2, comp... 40 6.1
14emb|BX511205.2|RN120J22 Rattus norvegicus chromosome 1 BAC RP32-... 40 6.1
15dbj|AK060651.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
16emb|AL672054.5| Mouse DNA sequence from clone RP23-237I22 on chr... 40 6.1

>emb|CR759819.7| Zebrafish DNA sequence from clone CH211-178L23, complete sequence
          Length = 118312

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 184   ccacatcacataactaacagcacgta 209
             |||||||||||||||||||| |||||
Sbjct: 93720 ccacatcacataactaacagtacgta 93745



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>gb|AC092819.2| Homo sapiens chromosome 8, clone RP11-716D16, complete sequence
          Length = 153310

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 90     caaagcaaacctcagagatttttaca 115
              ||||||||||| ||||||||||||||
Sbjct: 126254 caaagcaaaccccagagatttttaca 126229



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>gb|AC024601.9| Homo sapiens chromosome 10 clone RP11-262I2, complete sequence
          Length = 169293

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 88    atcaaagcaaacctcagagatt 109
             ||||||||||||||||||||||
Sbjct: 72312 atcaaagcaaacctcagagatt 72291



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>emb|CR354606.12| Zebrafish DNA sequence from clone CH211-252L23 in linkage group 18,
              complete sequence
          Length = 138838

 Score = 44.1 bits (22), Expect = 0.39
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 184    ccacatcacataactaacagcacgta 209
              |||||||||||||||||||| |||||
Sbjct: 108314 ccacatcacataactaacagtacgta 108339



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 110      tttacacatactcctccctaatcta 134
                |||||| ||||||||||||||||||
Sbjct: 14230055 tttacatatactcctccctaatcta 14230079



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 392      tccttccagaagcacgtgtcgggcgccagccg 423
                |||||||||||||| |  ||||||||||||||
Sbjct: 14230274 tccttccagaagcaggcatcgggcgccagccg 14230305



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>dbj|AP004992.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OSJNBa0022O02
          Length = 176625

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 110   tttacacatactcctccctaatcta 134
             |||||| ||||||||||||||||||
Sbjct: 73519 tttacatatactcctccctaatcta 73543



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 392   tccttccagaagcacgtgtcgggcgccagccg 423
             |||||||||||||| |  ||||||||||||||
Sbjct: 73738 tccttccagaagcaggcatcgggcgccagccg 73769



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>dbj|AK121496.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033001G17, full
            insert sequence
          Length = 2971

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 110  tttacacatactcctccctaatcta 134
            |||||| ||||||||||||||||||
Sbjct: 2919 tttacatatactcctccctaatcta 2895



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 392  tccttccagaagcacgtgtcgggcgccagccg 423
            |||||||||||||| |  ||||||||||||||
Sbjct: 2700 tccttccagaagcaggcatcgggcgccagccg 2669



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>gb|AC116413.12| Mus musculus chromosome 8, clone RP24-84J11, complete sequence
          Length = 210471

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 146    atgtatgtagtaacttgctt 165
              ||||||||||||||||||||
Sbjct: 167602 atgtatgtagtaacttgctt 167621



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>emb|AL732431.19| Human DNA sequence from clone XXyac-36GH4 on chromosome 6 Contains the
              gene for acid sphingomyelinase-like phosphodiesterase 3a
              (ASML3A), an H+ transporting mitochondrial F0 complex ATP
              synthase subunit g (ATP5L) pseudogene and two CpG islands,
              complete sequence
          Length = 164746

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 9      atcatgttcttttttaggta 28
              ||||||||||||||||||||
Sbjct: 140619 atcatgttcttttttaggta 140600



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>gb|CP000083.1| Colwellia psychrerythraea 34H, complete genome
          Length = 5373180

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 13      tgttcttttttaggtaatgt 32
               ||||||||||||||||||||
Sbjct: 2957446 tgttcttttttaggtaatgt 2957427



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>emb|BX572593.1| Rhodopseudomonas palustris CGA009 complete genome; segment 1/16
          Length = 349315

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 351    agaagccgatcccggtggcg 370
              ||||||||||||||||||||
Sbjct: 338808 agaagccgatcccggtggcg 338789



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>gb|AC118557.2| Homo sapiens chromosome 1 clone RP11-499N7, complete sequence
          Length = 168688

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    aaaaacaagctcactacaat 240
              ||||||||||||||||||||
Sbjct: 126103 aaaaacaagctcactacaat 126122



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>gb|AC156989.3| Mus musculus chromosome 1, clone RP23-379L2, complete sequence
          Length = 188691

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 81    aaagcatatcaaagcaaacctcag 104
             ||||||||| ||||||||||||||
Sbjct: 94489 aaagcatatgaaagcaaacctcag 94512



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>emb|BX511205.2|RN120J22 Rattus norvegicus chromosome 1 BAC RP32-120J22, complete sequence
          Length = 160764

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 205    acgtaccaagcatggaaaaa 224
              ||||||||||||||||||||
Sbjct: 108680 acgtaccaagcatggaaaaa 108699



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>dbj|AK060651.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H04, full
            insert sequence
          Length = 1348

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                            
Query: 392  tccttccagaagcacgtgtcgggcgccagccg 423
            |||||||||||||| |  ||||||||||||||
Sbjct: 1117 tccttccagaagcaggcatcgggcgccagccg 1086



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>emb|AL672054.5| Mouse DNA sequence from clone RP23-237I22 on chromosome X, complete
             sequence
          Length = 187770

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   aagcatggaaaaaacaagct 231
             ||||||||||||||||||||
Sbjct: 66693 aagcatggaaaaaacaagct 66712


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,731,098
Number of Sequences: 3902068
Number of extensions: 3731098
Number of successful extensions: 65629
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65560
Number of HSP's gapped (non-prelim): 69
length of query: 451
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 429
effective length of database: 17,147,199,772
effective search space: 7356148702188
effective search space used: 7356148702188
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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