Clone Name | rbastl30c12 |
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Clone Library Name | barley_pub |
>gb|AF305912.1|AF305912 Hordeum vulgare EDR1 (EDR1) mRNA, complete cds Length = 3338 Score = 850 bits (429), Expect = 0.0 Identities = 432/433 (99%) Strand = Plus / Minus Query: 4 actgaagtgacctttatttcagtatggcagaaaggaatcaaacacacaatgcactgttcc 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3317 actgaagtgacctttatttcagtatggcagaaaggaatcaaacacacaatgcactgttcc 3258 Query: 64 agattgccagcttatctgtgatgcaactaactcgacgcatagttacacatttcgctctcc 123 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3257 agattgccagcttatctgtgatgcaactaactcgacgcatagttacacatttcgctctcc 3198 Query: 124 ccgtcagtccacaatccacagttccacttaaacgtaaaactggtattgttttctcctcct 183 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3197 ctgtcagtccacaatccacagttccacttaaacgtaaaactggtattgttttctcctcct 3138 Query: 184 gctgtttcatcttatcagcctatatgtactgtacatacccgcagcagagcttttgcttgc 243 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3137 gctgtttcatcttatcagcctatatgtactgtacatacccgcagcagagcttttgcttgc 3078 Query: 244 aacagcggggtgaatgctatctagactgggacccagatatggtgacaaaatcataattac 303 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3077 aacagcggggtgaatgctatctagactgggacccagatatggtgacaaaatcataattac 3018 Query: 304 tccttattcacacttggtggatgacaaccccggggtagagatgtgagatgtgcggttcac 363 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3017 tccttattcacacttggtggatgacaaccccggggtagagatgtgagatgtgcggttcac 2958 Query: 364 cgatataaagatatttcatagggtacatgattgctcgctgtctcctgatgtgaagggatt 423 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2957 cgatataaagatatttcatagggtacatgattgctcgctgtctcctgatgtgaagggatt 2898 Query: 424 actagcctttgca 436 ||||||||||||| Sbjct: 2897 actagcctttgca 2885
>gb|AY743662.2| Triticum aestivum EDR1 (EDR1) mRNA, complete cds, alternatively spliced Length = 3050 Score = 216 bits (109), Expect = 5e-53 Identities = 140/151 (92%), Gaps = 7/151 (4%) Strand = Plus / Minus Query: 286 tgacaaaatcataattactccttattcacacttggtggatgacaaccccggggtagagat 345 ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct: 3017 tgacaaaatcataattactgcttattcacacttggtgggtgacaaccccggggtagagat 2958 Query: 346 gtgagatgtgcggttcaccgatataaagatatttcatagggtacatgattgctcgctgtc 405 ||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 2957 gtg-------cggttcaccgatataaagatatttcatagggtacatggttgctcgctgtc 2905 Query: 406 tcctgatgtgaagggattactagcctttgca 436 |||||||||||||||||||| |||||||||| Sbjct: 2904 tcctgatgtgaagggattacaagcctttgca 2874
>ref|NM_196630.1| Oryza sativa (japonica cultivar-group) putative enhanced disease resistance protein (OSJNBa0073D04.42), mRNA Length = 516 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Minus Query: 399 cgctgtctcctgatgtgaagggattactagcctttgca 436 ||||||||||||||| ||||||||||||||||||||| Sbjct: 477 cgctgtctcctgatgacaagggattactagcctttgca 440
>gb|AC087542.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0073D04, complete sequence Length = 155372 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 399 cgctgtctcctgatgtgaagggattactagcctttgca 436 ||||||||||||||| ||||||||||||||||||||| Sbjct: 153285 cgctgtctcctgatgacaagggattactagcctttgca 153322
>gb|AC087545.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0019M20, complete sequence Length = 139421 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 399 cgctgtctcctgatgtgaagggattactagcctttgca 436 ||||||||||||||| ||||||||||||||||||||| Sbjct: 7914 cgctgtctcctgatgacaagggattactagcctttgca 7951
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 399 cgctgtctcctgatgtgaagggattactagcctttgca 436 ||||||||||||||| ||||||||||||||||||||| Sbjct: 14828136 cgctgtctcctgatgacaagggattactagcctttgca 14828173
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 60.0 bits (30), Expect = 6e-06 Identities = 36/38 (94%) Strand = Plus / Plus Query: 399 cgctgtctcctgatgtgaagggattactagcctttgca 436 ||||||||||||||| ||||||||||||||||||||| Sbjct: 14836377 cgctgtctcctgatgacaagggattactagcctttgca 14836414
>dbj|AK121718.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033079M14, full insert sequence Length = 3394 Score = 52.0 bits (26), Expect = 0.002 Identities = 35/38 (92%) Strand = Plus / Minus Query: 399 cgctgtctcctgatgtgaagggattactagcctttgca 436 ||||||||||||||| ||||||||||| ||||||||| Sbjct: 2976 cgctgtctcctgatgacaagggattacttgcctttgca 2939
>gb|AC122747.11| Mus musculus chromosome 9, clone RP23-217J11, complete sequence Length = 195755 Score = 44.1 bits (22), Expect = 0.38 Identities = 22/22 (100%) Strand = Plus / Plus Query: 28 tggcagaaaggaatcaaacaca 49 |||||||||||||||||||||| Sbjct: 64007 tggcagaaaggaatcaaacaca 64028
>emb|BX070512.1|CNS09QKK Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAC7CE11 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 1038 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 ctatatgtactgtacataccc 223 ||||||||||||||||||||| Sbjct: 992 ctatatgtactgtacataccc 1012
>emb|AL772329.14| Zebrafish DNA sequence from clone CH211-150D5 in linkage group 3, complete sequence Length = 163559 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 taactgaagtgacctttattt 22 ||||||||||||||||||||| Sbjct: 62685 taactgaagtgacctttattt 62665
>emb|BX004964.9| Zebrafish DNA sequence from clone DKEY-7I4, complete sequence Length = 211018 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 taactgaagtgacctttattt 22 ||||||||||||||||||||| Sbjct: 182122 taactgaagtgacctttattt 182102
>gb|AC167141.2| Mus musculus BAC clone RP23-313L4 from chromosome 16, complete sequence Length = 192972 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tatggtgacaaaatcataat 300 |||||||||||||||||||| Sbjct: 86127 tatggtgacaaaatcataat 86146
>gb|AC113022.7| Mus musculus chromosome 5, clone RP23-187D22, complete sequence Length = 210968 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 288 acaaaatcataattactcct 307 |||||||||||||||||||| Sbjct: 94714 acaaaatcataattactcct 94733
>gb|AC115121.5| Mus musculus BAC clone RP23-204O13 from chromosome 19, complete sequence Length = 227154 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 16 tttatttcagtatggcagaaagga 39 ||||||||||||||||| |||||| Sbjct: 170427 tttatttcagtatggcacaaagga 170404
>gb|AC124675.9| Mus musculus chromosome 15, clone RP24-88M7, complete sequence Length = 207904 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 218 atacccgcagcagagcttttgctt 241 ||||||||||||||| |||||||| Sbjct: 85804 atacccgcagcagaggttttgctt 85827
>gb|AC124456.5| Mus musculus BAC clone RP24-134C11 from chromosome 9, complete sequence Length = 148114 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 160 aaactggtattgttttctcctcct 183 |||||||||||||||||| ||||| Sbjct: 147762 aaactggtattgttttcttctcct 147739
>gb|AC122928.4| Mus musculus BAC clone RP23-10G8 from 9, complete sequence Length = 205725 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 160 aaactggtattgttttctcctcct 183 |||||||||||||||||| ||||| Sbjct: 187413 aaactggtattgttttcttctcct 187436
>gb|AC129602.3| Mus musculus BAC clone RP23-37L24 from 16, complete sequence Length = 185729 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 281 tatggtgacaaaatcataat 300 |||||||||||||||||||| Sbjct: 120507 tatggtgacaaaatcataat 120526
>gb|AC129544.7| Mus musculus chromosome 12, clone RP23-258H6, complete sequence Length = 232275 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 tataaagatatttcataggg 386 |||||||||||||||||||| Sbjct: 228202 tataaagatatttcataggg 228183
>gb|AC112916.3| Homo sapiens X BAC RP11-765I9 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172457 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 53 tgcactgttccagattgccagcttatct 80 |||| ||||||||||||| ||||||||| Sbjct: 16803 tgcagtgttccagattgcaagcttatct 16830
>gb|AC097348.5| Homo sapiens X BAC RP11-489K4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 85293 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 53 tgcactgttccagattgccagcttatct 80 |||| ||||||||||||| ||||||||| Sbjct: 16822 tgcagtgttccagattgcaagcttatct 16849
>gb|DP000032.1| Felis catus target 116 genomic scaffold Length = 376810 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 tgcactgttccagattgcca 72 |||||||||||||||||||| Sbjct: 332851 tgcactgttccagattgcca 332832
>gb|AE016820.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VII, complete sequence Length = 1476513 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tttcagtatggcagaaagga 39 |||||||||||||||||||| Sbjct: 452731 tttcagtatggcagaaagga 452712
>gb|AC093759.3| Homo sapiens BAC clone RP11-67M1 from 4, complete sequence Length = 177807 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 53 tgcactgttccagattgcca 72 |||||||||||||||||||| Sbjct: 110731 tgcactgttccagattgcca 110712
>gb|AC154417.2| Mus musculus BAC clone RP23-169H21 from 13, complete sequence Length = 233984 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 163 ctggtattgttttctcctcc 182 |||||||||||||||||||| Sbjct: 132846 ctggtattgttttctcctcc 132827
>ref|NM_211590.1| Eremothecium gossypii AGL139Wp (AGL139W), mRNA Length = 2196 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 20 tttcagtatggcagaaagga 39 |||||||||||||||||||| Sbjct: 1266 tttcagtatggcagaaagga 1247
>gb|AC155260.2| Mus musculus BAC clone RP24-71G3 from 12, complete sequence Length = 190003 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 367 tataaagatatttcataggg 386 |||||||||||||||||||| Sbjct: 87088 tataaagatatttcataggg 87107
>gb|AC124735.4| Mus musculus BAC clone RP23-310O18 from 5, complete sequence Length = 203527 Score = 40.1 bits (20), Expect = 5.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 280 atatggtgacaaaatcataa 299 |||||||||||||||||||| Sbjct: 181053 atatggtgacaaaatcataa 181034 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,800,762 Number of Sequences: 3902068 Number of extensions: 3800762 Number of successful extensions: 71611 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 29 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 71511 Number of HSP's gapped (non-prelim): 100 length of query: 439 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 417 effective length of database: 17,147,199,772 effective search space: 7150382304924 effective search space used: 7150382304924 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)