ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30c11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1REG3B_MOUSE (P35230) Regenerating islet-derived protein 3 beta p... 30 2.1
2MATK_PEA (Q5YJU1) Maturase K (Intron maturase) 28 4.6
3REG3G_RAT (P42854) Regenerating islet-derived protein 3 gamma pr... 28 6.0

>REG3B_MOUSE (P35230) Regenerating islet-derived protein 3 beta precursor (Reg|
           III-beta) (Pancreatitis-associated protein 1)
          Length = 175

 Score = 29.6 bits (65), Expect = 2.1
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 279 LLLHEGQGHRRLTDVPSLFIQC*RGAKLFFSYLVLIFR 166
           +LL + QG   L ++PS  I C +G++ + SY   +F+
Sbjct: 19  MLLSQVQGEDSLKNIPSARISCPKGSQAYGSYCYALFQ 56



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>MATK_PEA (Q5YJU1) Maturase K (Intron maturase)|
          Length = 506

 Score = 28.5 bits (62), Expect = 4.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -3

Query: 84  FITSSKDVNCSRQDSGKLLIFRHNFILC 1
           FIT+ K ++   + + +L +F HNF +C
Sbjct: 190 FITTKKSISTFSKSNPRLFLFLHNFYVC 217



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>REG3G_RAT (P42854) Regenerating islet-derived protein 3 gamma precursor (Reg|
           III-gamma) (Pancreatitis-associated protein 3)
          Length = 174

 Score = 28.1 bits (61), Expect = 6.0
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -3

Query: 279 LLLHEGQGHRRLTDVPSLFIQC*RGAKLFFSYLVLIF 169
           +LL + QG     DVP+  I C +G++ + SY   +F
Sbjct: 19  MLLSQVQGEDAKEDVPTSRISCPKGSRAYGSYCYALF 55


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,072,817
Number of Sequences: 219361
Number of extensions: 408985
Number of successful extensions: 748
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 748
length of database: 80,573,946
effective HSP length: 72
effective length of database: 64,779,954
effective search space used: 1554718896
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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