>EMP70_YEAST (P32802) Endosomal P24A protein precursor (70 kDa endomembrane|
           protein) (Pheromone alpha-factor transporter) (Acidic 24
           kDa late endocytic intermediate component)
          Length = 667

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 169 TCLTLNRIFFPHRFAFFSCLLRYTHICLQSVLITF 65
           T L  N+IF+   F FFS LL      L ++LIT+
Sbjct: 549 TSLWFNKIFYMFGFLFFSFLLLTLTSSLVTILITY 583

>RAS2_NEUCR (Q01387) Protein ras-2|
          Length = 229

 Score = 28.1 bits (61), Expect = 5.2
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 52  LQLCRM*LKHFEGKYVCT*EDN*RKQIYVEKKSC 153
           +QLC   L+HF   Y  T ED+ RKQ+ ++ ++C
Sbjct: 26  IQLC---LEHFVETYDPTIEDSYRKQVVIDGQAC 56

>RPOA_SHFV (Q68772) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:|
           Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha
           papain-like cysteine proteinase (EC 3.4.22.-)
           (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase
           (EC 3.4.22.-) (PCP1
          Length = 3596

 Score = 27.3 bits (59), Expect = 8.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -2

Query: 405 CWIHACFPHGWCSKAASQI*PILTSHPVSCPA 310
           C++ AC  HGWCS   S+       H V C A
Sbjct: 720 CFVEAC-AHGWCSSLLSEPTGEEGEHLVDCSA 750


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,322,010
Number of Sequences: 219361
Number of extensions: 1228772
Number of successful extensions: 2337
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2337
length of database: 80,573,946
effective HSP length: 110
effective length of database: 56,444,236
effective search space used: 1354661664
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)