>gb|AC109601.9| Oryza sativa chromosome 3 BAC OSJNBa0004G03 genomic sequence, complete
             sequence
          Length = 145590

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                        
Query: 307   ggaggctggacacgagacggggtgaga 333
             |||||||||||| ||||||||||||||
Sbjct: 43957 ggaggctggacatgagacggggtgaga 43983

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 307      ggaggctggacacgagacggggtgaga 333
                |||||||||||| ||||||||||||||
Sbjct: 22448710 ggaggctggacatgagacggggtgaga 22448736

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 66/79 (83%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                            
Query: 15       cttgatcactattggaaaaataccattctataatgtgctgcaactttgcagaatgtaatt 74
                ||||| |||||||||| || | |||| ||||||  | ||| |||||||||| ||||||||
Sbjct: 23529233 cttgagcactattggacaa-tgccatactataacttactggaactttgcaggatgtaatt 23529291

                                   
Query: 75       aaaacactttgaaggcaaa 93
                 ||  ||||||||||||||
Sbjct: 23529292 gaagtactttgaaggcaaa 23529310



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                             
Query: 258      tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 302
                ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 23529497 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 23529541

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 307      ggaggctggacacgagacggggtgaga 333
                |||||||||||| ||||||||||||||
Sbjct: 22441739 ggaggctggacatgagacggggtgaga 22441765

>dbj|AK120756.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023007B14, full
            insert sequence
          Length = 4434

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 66/79 (83%), Gaps = 1/79 (1%)
 Strand = Plus / Minus

                                                                        
Query: 15   cttgatcactattggaaaaataccattctataatgtgctgcaactttgcagaatgtaatt 74
            ||||| |||||||||| || | |||| ||||||  | ||| |||||||||| ||||||||
Sbjct: 4390 cttgagcactattggacaa-tgccatactataacttactggaactttgcaggatgtaatt 4332

                               
Query: 75   aaaacactttgaaggcaaa 93
             ||  ||||||||||||||
Sbjct: 4331 gaagtactttgaaggcaaa 4313



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 258  tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 302
            ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 4126 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 4082

>dbj|AK100883.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023127M15, full
            insert sequence
          Length = 4644

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 66/79 (83%), Gaps = 1/79 (1%)
 Strand = Plus / Minus

                                                                        
Query: 15   cttgatcactattggaaaaataccattctataatgtgctgcaactttgcagaatgtaatt 74
            ||||| |||||||||| || | |||| ||||||  | ||| |||||||||| ||||||||
Sbjct: 4623 cttgagcactattggacaa-tgccatactataacttactggaactttgcaggatgtaatt 4565

                               
Query: 75   aaaacactttgaaggcaaa 93
             ||  ||||||||||||||
Sbjct: 4564 gaagtactttgaaggcaaa 4546



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 258  tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 302
            ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 4359 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 4315

>emb|AL606441.3|OSJN00012 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0089K21,
             complete sequence
          Length = 139298

 Score = 46.1 bits (23), Expect = 0.088
 Identities = 66/79 (83%), Gaps = 1/79 (1%)
 Strand = Plus / Plus

                                                                         
Query: 15    cttgatcactattggaaaaataccattctataatgtgctgcaactttgcagaatgtaatt 74
             ||||| |||||||||| || | |||| ||||||  | ||| |||||||||| ||||||||
Sbjct: 85136 cttgagcactattggacaa-tgccatactataacttactggaactttgcaggatgtaatt 85194

                                
Query: 75    aaaacactttgaaggcaaa 93
              ||  ||||||||||||||
Sbjct: 85195 gaagtactttgaaggcaaa 85213



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 258   tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 302
             ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 85400 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 85444

>gb|AC101661.7| Mus musculus chromosome 1, clone RP23-26A10, complete sequence
          Length = 228933

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 100    tgtacctgagaagacaactaaagaaagcaa 129
              ||||||||| ||| ||||||||||||||||
Sbjct: 197470 tgtacctgacaaggcaactaaagaaagcaa 197441

>emb|AL645669.11| Mouse DNA sequence from clone RP23-26A10 on chromosome 1 Contains part of
              the gene for ortholog of human amyotrophic lateral
              sclerosis 2 (juvenile) chromosome region candidate 19
              (ALS2CR19), complete sequence
          Length = 228932

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 100    tgtacctgagaagacaactaaagaaagcaa 129
              ||||||||| ||| ||||||||||||||||
Sbjct: 197469 tgtacctgacaaggcaactaaagaaagcaa 197440

>dbj|AK099564.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013034M05, full
            insert sequence
          Length = 3444

 Score = 44.1 bits (22), Expect = 0.35
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 56   aactttgcagaatgtaattaaaacactttgaaggcaaa 93
            |||||||||| |||||||| ||  ||||||||||||||
Sbjct: 3442 aactttgcaggatgtaattgaagtactttgaaggcaaa 3405



 Score = 42.1 bits (21), Expect = 1.4
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 258  tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 302
            ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 3218 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 3174

>ref|XM_472831.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3720

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 39/45 (86%)
 Strand = Plus / Minus

                                                         
Query: 258  tcaccgtaaatcctgcgaatagtaaacatgcgggtttatgtaacc 302
            ||||||||||| |||||||||||| ||    ||||||||||||||
Sbjct: 3720 tcaccgtaaattctgcgaatagtagaccgatgggtttatgtaacc 3676

>gb|AC163898.5| Mus musculus chromosome 7, clone RP24-108A5, complete sequence
          Length = 143726

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 65     gaatgtaattaaaacactttg 85
              |||||||||||||||||||||
Sbjct: 110534 gaatgtaattaaaacactttg 110514

>gb|AC006635.2| Caenorhabditis elegans cosmid F38G1, complete sequence
          Length = 24444

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 55    caactttgcagaatgtaattaaaac 79
             ||||||||||||||| |||||||||
Sbjct: 13211 caactttgcagaatgaaattaaaac 13235

>emb|Z83848.1|HS57A13 Human DNA sequence from clone RP1-57A13 on chromosome Xq24 Contains the
             5' end of the GRIA3 gene for glutamate receptor,
             ionotrophic, AMPA 3, the gene for a novel protein and a
             CpG island, complete sequence
          Length = 169693

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 34    ataccattctataatgtgctg 54
             |||||||||||||||||||||
Sbjct: 43831 ataccattctataatgtgctg 43811

>ref|NM_075705.3| Caenorhabditis elegans F38G1.1 (G-beta-repeats) mRNA, complete
          cds
          Length = 2414

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 55 caactttgcagaatgtaattaaaac 79
          ||||||||||||||| |||||||||
Sbjct: 62 caactttgcagaatgaaattaaaac 86

>gb|CP000066.1| Trypanosoma brucei chromosome 3, complete sequence
          Length = 1653225

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    ccaaccatggggaaagcagg 392
              ||||||||||||||||||||
Sbjct: 788099 ccaaccatggggaaagcagg 788080

>gb|AC104642.11| Trypanosoma brucei chromosome 3 clone RPCI93-27C5, complete sequence
          Length = 126762

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 373   ccaaccatggggaaagcagg 392
             ||||||||||||||||||||
Sbjct: 97047 ccaaccatggggaaagcagg 97028

>gb|AC079274.4| Mus musculus strain C57BL6/J chromosome 6 clone RP23-142L8, complete
             sequence
          Length = 113724

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 380   tggggaaagcaggcatggat 399
             ||||||||||||||||||||
Sbjct: 74198 tggggaaagcaggcatggat 74179

>gb|AC133081.4| Mus musculus BAC clone RP24-290O13 from chromosome 3, complete sequence
          Length = 180525

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    atctcattttcaagttctct 234
              ||||||||||||||||||||
Sbjct: 100629 atctcattttcaagttctct 100610

>ref|XM_820542.1| Trypanosoma brucei TREU927 clone RPCI93-27C5 3', 5'-cyclic nucleotide
            phosphodiesterase (Tb927.3.3070) partial mRNA
          Length = 2730

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 373  ccaaccatggggaaagcagg 392
            ||||||||||||||||||||
Sbjct: 1856 ccaaccatggggaaagcagg 1875

>gb|AC090099.14| Homo sapiens chromosome 11, clone RP11-113D6, complete sequence
          Length = 172939

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   tgagaagacaactaaagaaa 125
             ||||||||||||||||||||
Sbjct: 12740 tgagaagacaactaaagaaa 12759

>gb|AC113415.3| Homo sapiens chromosome 5 clone RP11-55N10, complete sequence
          Length = 170798

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 59    tttgcagaatgtaattaaaa 78
             ||||||||||||||||||||
Sbjct: 40956 tttgcagaatgtaattaaaa 40937

>gb|AC107948.7| Homo sapiens chromosome 11, clone RP11-81D23, complete sequence
          Length = 156839

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   tgagaagacaactaaagaaa 125
             ||||||||||||||||||||
Sbjct: 90888 tgagaagacaactaaagaaa 90907

>gb|AC026741.6| Homo sapiens chromosome 5 clone CTD-2653M23, complete sequence
          Length = 195849

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    attggaaaaataccattcta 44
             ||||||||||||||||||||
Sbjct: 58900 attggaaaaataccattcta 58919

>gb|AC020699.6| Homo sapiens BAC clone RP11-131K17 from 4, complete sequence
          Length = 186961

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   aaatctcattttcaagttct 232
             ||||||||||||||||||||
Sbjct: 15093 aaatctcattttcaagttct 15074

>gb|AC130462.3| Homo sapiens chromosome 16 clone CTA-67A1, complete sequence
          Length = 191594

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     ctgcaactttgcagaatgta 71
              ||||||||||||||||||||
Sbjct: 181616 ctgcaactttgcagaatgta 181635

>gb|AC005235.2| Homo sapiens BAC clone RP11-439M9 from 2, complete sequence
          Length = 197911

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 216   tctcattttcaagttctctt 235
             ||||||||||||||||||||
Sbjct: 47540 tctcattttcaagttctctt 47521

>gb|AC020978.10| Homo sapiens chromosome 16 clone RP11-96D1, complete sequence
          Length = 164293

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 52     ctgcaactttgcagaatgta 71
              ||||||||||||||||||||
Sbjct: 150919 ctgcaactttgcagaatgta 150900

>gb|AC020655.10| Homo sapiens 3 BAC RP11-15B4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 145820

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 19    atcactattggaaaaatacc 38
             ||||||||||||||||||||
Sbjct: 26810 atcactattggaaaaatacc 26791

>emb|Z33352.1|MCAAO M.capricolum DNA for CONTIG MCAAO
          Length = 1629

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 110  aagacaactaaagaaagcaa 129
            ||||||||||||||||||||
Sbjct: 1408 aagacaactaaagaaagcaa 1427

>emb|AJ870302.1| Cucumis sativus mRNA for putative zinc finger protein (se1a12 gene)
          Length = 1274

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 53  tgcaactttgcagaatgtaa 72
           ||||||||||||||||||||
Sbjct: 202 tgcaactttgcagaatgtaa 221

>gb|AC153739.3| Aotus nancymaae clone CH258-485H7, complete sequence
          Length = 47312

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 211   acaaatctcattttcaagtt 230
             ||||||||||||||||||||
Sbjct: 36430 acaaatctcattttcaagtt 36411

>gb|AE016854.1| Pseudomonas syringae pv. tomato str. DC3000 plasmid pDC3000B, complete
             sequence
          Length = 67473

 Score = 40.1 bits (20), Expect = 5.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 23    ctattggaaaaataccattc 42
             ||||||||||||||||||||
Sbjct: 36245 ctattggaaaaataccattc 36226


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,837,470
Number of Sequences: 3902068
Number of extensions: 3837470
Number of successful extensions: 73473
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 73357
Number of HSP's gapped (non-prelim): 110
length of query: 406
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 384
effective length of database: 17,147,199,772
effective search space: 6584524712448
effective search space used: 6584524712448
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)