ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbastl30c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PLD1_CRIGR (O08684) Phospholipase D1 (EC 3.1.4.4) (PLD 1) (Choli... 34 0.12
2PLD1_HUMAN (Q13393) Phospholipase D1 (EC 3.1.4.4) (PLD 1) (Choli... 33 0.36
3PLD1_MOUSE (Q9Z280) Phospholipase D1 (EC 3.1.4.4) (PLD 1) (Choli... 32 0.79
4PLD1_RAT (P70496) Phospholipase D1 (EC 3.1.4.4) (PLD 1) (Choline... 31 1.4
5SP5G_SYMTH (Q67JC7) Putative septation protein spoVG 28 6.7
6FOLR1_HUMAN (P15328) Folate receptor alpha precursor (FR-alpha) ... 28 8.8

>PLD1_CRIGR (O08684) Phospholipase D1 (EC 3.1.4.4) (PLD 1) (Choline phosphatase|
           1) (Phosphatidylcholine-hydrolyzing phospholipase D1)
          Length = 1036

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = -1

Query: 424 VDLDRSPSPQEQDDKSAPYSPVYNGEGGRGSMSPNVEPVVDAKPVEVSVSSTKR 263
           V+ D SP   +  +K  P+S +YN +G +    PN++  +   P++  V   +R
Sbjct: 40  VEFDTSPGDPKAQEKYIPFSSIYNTQGFK---EPNIQTYLSGCPIKAQVLEVER 90



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>PLD1_HUMAN (Q13393) Phospholipase D1 (EC 3.1.4.4) (PLD 1) (Choline phosphatase|
           1) (Phosphatidylcholine-hydrolyzing phospholipase D1)
           (hPLD1)
          Length = 1074

 Score = 32.7 bits (73), Expect = 0.36
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = -1

Query: 424 VDLDRSPSPQEQDDKSAPYSPVYNGEGGRGSMSPNVEPVVDAKPVEVSVSSTKR 263
           VD D SPS  +  +   P+S +YN +G +    PN++  +   P++  V   +R
Sbjct: 40  VDYDVSPSDPKIQEVYIPFSAIYNTQGFK---EPNIQTYLSGCPIKAQVLEVER 90



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>PLD1_MOUSE (Q9Z280) Phospholipase D1 (EC 3.1.4.4) (PLD 1) (Choline phosphatase|
           1) (Phosphatidylcholine-hydrolyzing phospholipase D1)
           (mPLD1)
          Length = 1074

 Score = 31.6 bits (70), Expect = 0.79
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = -1

Query: 424 VDLDRSPSPQEQDDKSAPYSPVYNGEGGRGSMSPNVEPVVDAKPVEVSVSSTKR 263
           V+ D SP   +  +   P+S +YN +G +    PN++  +   P++  V   +R
Sbjct: 40  VEYDASPGDPKAQEGCIPFSSIYNTQGFK---EPNIQTYLSGCPIKAQVLEVER 90



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>PLD1_RAT (P70496) Phospholipase D1 (EC 3.1.4.4) (PLD 1) (Choline phosphatase|
           1) (Phosphatidylcholine-hydrolyzing phospholipase D1)
           (rPLD1)
          Length = 1074

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 15/54 (27%), Positives = 26/54 (48%)
 Frame = -1

Query: 424 VDLDRSPSPQEQDDKSAPYSPVYNGEGGRGSMSPNVEPVVDAKPVEVSVSSTKR 263
           V+ D SP      +   P+S +YN +G +    PN++  +   PV+  V   +R
Sbjct: 40  VEYDASPGDPTAQEACIPFSSIYNTQGFK---EPNIQIYLSGCPVKAQVLEVER 90



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>SP5G_SYMTH (Q67JC7) Putative septation protein spoVG|
          Length = 140

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 406 PSPQEQDDKSAPYSPVYNGEGGR 338
           P+PQ QD+   P+ P  +GEG R
Sbjct: 106 PAPQLQDESELPWEPGDDGEGAR 128



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>FOLR1_HUMAN (P15328) Folate receptor alpha precursor (FR-alpha) (Folate|
           receptor 1) (Folate receptor, adult) (Adult
           folate-binding protein) (FBP) (Ovarian tumor-associated
           antigen MOv18) (KB cells FBP)
          Length = 257

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 12/35 (34%), Positives = 14/35 (40%)
 Frame = +1

Query: 319 H*GSLTPCLLRHYTQDYMEQTCHPAPADWATDPDQ 423
           H G + P   RH+ QD     C P    W    DQ
Sbjct: 88  HCGEMAPACKRHFIQDTCLYECSPNLGPWIQQVDQ 122


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,880,502
Number of Sequences: 219361
Number of extensions: 914333
Number of successful extensions: 2232
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2232
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2278320915
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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